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<article xml:lang="en" article-type="research-article" xmlns:xlink="http://www.w3.org/1999/xlink">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">IJO</journal-id>
<journal-title-group>
<journal-title>International Journal of Oncology</journal-title></journal-title-group>
<issn pub-type="ppub">1019-6439</issn>
<issn pub-type="epub">1791-2423</issn>
<publisher>
<publisher-name>D.A. Spandidos</publisher-name></publisher></journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3892/ijo.2014.2478</article-id>
<article-id pub-id-type="publisher-id">ijo-45-02-0782</article-id>
<article-categories>
<subj-group>
<subject>Articles</subject></subj-group></article-categories>
<title-group>
<article-title>The novel pterostilbene derivative ANK-199 induces autophagic cell death through regulating PI3 kinase class III/beclin 1/Atg-related proteins in cisplatin-resistant CAR human oral cancer cells</article-title></title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>HSIEH</surname><given-names>MIN-TSANG</given-names></name><xref rid="af1-ijo-45-02-0782" ref-type="aff">1</xref><xref rid="af4-ijo-45-02-0782" ref-type="aff">4</xref></contrib>
<contrib contrib-type="author">
<name><surname>CHEN</surname><given-names>HAO-PING</given-names></name><xref rid="af5-ijo-45-02-0782" ref-type="aff">5</xref></contrib>
<contrib contrib-type="author">
<name><surname>LU</surname><given-names>CHI-CHENG</given-names></name><xref rid="af6-ijo-45-02-0782" ref-type="aff">6</xref></contrib>
<contrib contrib-type="author">
<name><surname>CHIANG</surname><given-names>JO-HUA</given-names></name><xref rid="af7-ijo-45-02-0782" ref-type="aff">7</xref></contrib>
<contrib contrib-type="author">
<name><surname>WU</surname><given-names>TIAN-SHUNG</given-names></name><xref rid="af7-ijo-45-02-0782" ref-type="aff">7</xref></contrib>
<contrib contrib-type="author">
<name><surname>KUO</surname><given-names>DAIH-HUANG</given-names></name><xref rid="af8-ijo-45-02-0782" ref-type="aff">8</xref></contrib>
<contrib contrib-type="author">
<name><surname>HUANG</surname><given-names>LI-JIAU</given-names></name><xref rid="af2-ijo-45-02-0782" ref-type="aff">2</xref></contrib>
<contrib contrib-type="author">
<name><surname>KUO</surname><given-names>SHENG-CHU</given-names></name><xref rid="af2-ijo-45-02-0782" ref-type="aff">2</xref><xref ref-type="corresp" rid="c1-ijo-45-02-0782"/></contrib>
<contrib contrib-type="author">
<name><surname>YANG</surname><given-names>JAI-SING</given-names></name><xref rid="af3-ijo-45-02-0782" ref-type="aff">3</xref><xref ref-type="corresp" rid="c1-ijo-45-02-0782"/></contrib></contrib-group>
<aff id="af1-ijo-45-02-0782">
<label>1</label>School of Pharmacy, China Medical University, Taichung 404, Taiwan, R.O.C.</aff>
<aff id="af2-ijo-45-02-0782">
<label>2</label>Graduate Institute of Pharmaceutical Chemistry, China Medical University, Taichung 404, Taiwan, R.O.C.</aff>
<aff id="af3-ijo-45-02-0782">
<label>3</label>Department of Pharmacology, China Medical University, Taichung 404, Taiwan, R.O.C.</aff>
<aff id="af4-ijo-45-02-0782">
<label>4</label>Chinese Medicinal Research and Development Center, China Medical University Hospital, Taichung 404, Taiwan, R.O.C.</aff>
<aff id="af5-ijo-45-02-0782">
<label>5</label>Department of Biochemistry, Tzu Chi University, Hualien 970, Taiwan, R.O.C.</aff>
<aff id="af6-ijo-45-02-0782">
<label>6</label>Department of Food Science and Biotechnology, National Chung Hsing University, Taichung 402, Taiwan, R.O.C.</aff>
<aff id="af7-ijo-45-02-0782">
<label>7</label>Department of Chemistry, National Cheng Kung University, Tainan 701, Taiwan, R.O.C.</aff>
<aff id="af8-ijo-45-02-0782">
<label>8</label>Department of Pharmacy and Graduate Institute of Pharmaceutical Technology, Tajen University, Pingtung 907, Taiwan, R.O.C.</aff>
<author-notes>
<corresp id="c1-ijo-45-02-0782">Correspondence to: Professor Sheng-Chu Kuo, Graduate Institute of Pharmaceutical Chemistry, China Medical University, No. 91, Hsueh-Shih Road, Taichung 40402, Taiwan, R.O.C. E-mail: <email>sckuo@mail.cmu.edu.tw</email>. Dr Jai-Sing Yang, Department of Pharmacology, China Medical University, No. 91, Hsueh-Shih Road, Taichung 40402, Taiwan, R.O.C. E-mail: <email>jaisingyang@gmail.com</email></corresp></author-notes>
<pub-date pub-type="collection">
<month>8</month>
<year>2014</year></pub-date>
<pub-date pub-type="epub">
<day>02</day>
<month>06</month>
<year>2014</year></pub-date>
<volume>45</volume>
<issue>2</issue>
<fpage>782</fpage>
<lpage>794</lpage>
<history>
<date date-type="received">
<day>06</day>
<month>03</month>
<year>2014</year></date>
<date date-type="accepted">
<day>02</day>
<month>05</month>
<year>2014</year></date></history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2014, Spandidos Publications</copyright-statement>
<copyright-year>2014</copyright-year>
<license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/3.0">
<license-p>This is an open-access article licensed under a Creative Commons Attribution-NonCommercial 3.0 Unported License. The article may be redistributed, reproduced, and reused for non-commercial purposes, provided the original source is properly cited.</license-p></license></permissions>
<abstract>
<p>Pterostilbene is an effective chemopreventive agent against multiple types of cancer cells. A novel pterostilbene derivative, ANK-199, was designed and synthesized by our group. Its antitumor activity and mechanism in cisplatin-resistant CAR human oral cancer cells were investigated in this study. Our results show that ANK-199 has an extremely low toxicity in normal oral cell lines. The formation of autophagic vacuoles and acidic vesicular organelles (AVOs) was observed in the ANK-199-treated CAR cells by monodansylcadaverine (MDC) and acridine orange (AO) staining, suggesting that ANK-199 is able to induce autophagic cell death in CAR cells. Neither DNA fragmentation nor DNA condensation was observed, which means that ANK-199-induced cell death is not triggered by apoptosis. In accordance with morphological observation, 3-MA, a specific inhibitor of PI3K kinase class III, can inhibit the autophagic vesicle formation induced by ANK-199. In addition, ANK-199 is also able to enhance the protein levels of autophagic proteins, Atg complex, beclin 1, PI3K class III and LC3-II, and mRNA expression of autophagic genes <italic>Atg7, Atg12</italic>, <italic>beclin 1</italic> and <italic>LC3-II</italic> in the ANK-199-treated CAR cells. A molecular signaling pathway induced by ANK-199 was therefore summarized. Results presented in this study show that ANK-199 may become a novel therapeutic reagent for the treatment of oral cancer in the near future (patent pending).</p></abstract>
<kwd-group>
<kwd>ANK-199</kwd>
<kwd>autophagic cell death</kwd>
<kwd>PI3 kinase class III</kwd>
<kwd>beclin 1</kwd>
<kwd>autophagy-related proteins</kwd>
<kwd>cisplatin-resistant CAR human oral cancer cells</kwd></kwd-group></article-meta></front>
<body>
<sec sec-type="intro">
<title>Introduction</title>
<p>Pterostilbene, a natural stilbenoid compound of phenolic phytoalexin analogue, is found in narra tree, grape and blueberries (<xref rid="f1-ijo-45-02-0782" ref-type="fig">Fig. 1A</xref>) (<xref rid="b1-ijo-45-02-0782" ref-type="bibr">1</xref>&#x02013;<xref rid="b4-ijo-45-02-0782" ref-type="bibr">4</xref>). It possesses many different pharmacological and biologic activities, such as anticancer activity with low intrinsic toxicity (<xref rid="b4-ijo-45-02-0782" ref-type="bibr">4</xref>&#x02013;<xref rid="b6-ijo-45-02-0782" ref-type="bibr">6</xref>), anti-inflammatory properties (<xref rid="b7-ijo-45-02-0782" ref-type="bibr">7</xref>&#x02013;<xref rid="b9-ijo-45-02-0782" ref-type="bibr">9</xref>), anti-oxidative effect (<xref rid="b2-ijo-45-02-0782" ref-type="bibr">2</xref>), regulation of neutrophil function (<xref rid="b10-ijo-45-02-0782" ref-type="bibr">10</xref>,<xref rid="b11-ijo-45-02-0782" ref-type="bibr">11</xref>) and protection against free radical-mediated oxidative damage (<xref rid="b12-ijo-45-02-0782" ref-type="bibr">12</xref>&#x02013;<xref rid="b14-ijo-45-02-0782" ref-type="bibr">14</xref>). The anticancer activity of pterostilbene has drawn the most attention among of them so far (<xref rid="b1-ijo-45-02-0782" ref-type="bibr">1</xref>,<xref rid="b4-ijo-45-02-0782" ref-type="bibr">4</xref>&#x02013;<xref rid="b6-ijo-45-02-0782" ref-type="bibr">6</xref>). As reported in previous studies, pro-apoptosis (<xref rid="b4-ijo-45-02-0782" ref-type="bibr">4</xref>,<xref rid="b15-ijo-45-02-0782" ref-type="bibr">15</xref>,<xref rid="b16-ijo-45-02-0782" ref-type="bibr">16</xref>), pro-autophagy (<xref rid="b17-ijo-45-02-0782" ref-type="bibr">17</xref>&#x02013;<xref rid="b19-ijo-45-02-0782" ref-type="bibr">19</xref>), telomerase inhibition (<xref rid="b20-ijo-45-02-0782" ref-type="bibr">20</xref>), DNA damage (<xref rid="b12-ijo-45-02-0782" ref-type="bibr">12</xref>,<xref rid="b13-ijo-45-02-0782" ref-type="bibr">13</xref>,<xref rid="b15-ijo-45-02-0782" ref-type="bibr">15</xref>), anti-angiogenesis (<xref rid="b21-ijo-45-02-0782" ref-type="bibr">21</xref>), anti-metastasis (<xref rid="b4-ijo-45-02-0782" ref-type="bibr">4</xref>,<xref rid="b21-ijo-45-02-0782" ref-type="bibr">21</xref>) and immuno-stimulatory effects (<xref rid="b10-ijo-45-02-0782" ref-type="bibr">10</xref>,<xref rid="b11-ijo-45-02-0782" ref-type="bibr">11</xref>) are possible mechanisms responsible for its anticancer activity.</p>
<p>Pterostilbene is able to induce apoptosis in many different cancer cell lines, such as pancreatic cancer cells (<xref rid="b22-ijo-45-02-0782" ref-type="bibr">22</xref>,<xref rid="b23-ijo-45-02-0782" ref-type="bibr">23</xref>), breast cancer MCF-7 cells (<xref rid="b20-ijo-45-02-0782" ref-type="bibr">20</xref>,<xref rid="b24-ijo-45-02-0782" ref-type="bibr">24</xref>,<xref rid="b25-ijo-45-02-0782" ref-type="bibr">25</xref>), docetaxel-induced multiple drug resistance (MDR) lung cancer cells (<xref rid="b26-ijo-45-02-0782" ref-type="bibr">26</xref>), osteosarcoma cells (<xref rid="b27-ijo-45-02-0782" ref-type="bibr">27</xref>), prostate cancer PC-3 and LNCaP cells (<xref rid="b28-ijo-45-02-0782" ref-type="bibr">28</xref>,<xref rid="b29-ijo-45-02-0782" ref-type="bibr">29</xref>), leukemia K562 cells (<xref rid="b30-ijo-45-02-0782" ref-type="bibr">30</xref>,<xref rid="b31-ijo-45-02-0782" ref-type="bibr">31</xref>), MDR and BCR-ABL-expressing leukemia cells (<xref rid="b30-ijo-45-02-0782" ref-type="bibr">30</xref>,<xref rid="b31-ijo-45-02-0782" ref-type="bibr">31</xref>), colon cancer cells (<xref rid="b32-ijo-45-02-0782" ref-type="bibr">32</xref>&#x02013;<xref rid="b34-ijo-45-02-0782" ref-type="bibr">34</xref>), hepatocellular carcinoma cells (<xref rid="b35-ijo-45-02-0782" ref-type="bibr">35</xref>,<xref rid="b36-ijo-45-02-0782" ref-type="bibr">36</xref>) and gastric carcinoma cells (<xref rid="b7-ijo-45-02-0782" ref-type="bibr">7</xref>,<xref rid="b15-ijo-45-02-0782" ref-type="bibr">15</xref>). On the other hand, it is also reported that autophagic death can be triggered by pterostilbene in leukemia HL60 (<xref rid="b17-ijo-45-02-0782" ref-type="bibr">17</xref>) and MOLT4 cells (<xref rid="b37-ijo-45-02-0782" ref-type="bibr">37</xref>), lung cancer cells (<xref rid="b18-ijo-45-02-0782" ref-type="bibr">18</xref>,<xref rid="b32-ijo-45-02-0782" ref-type="bibr">32</xref>,<xref rid="b38-ijo-45-02-0782" ref-type="bibr">38</xref>), colon cancer HT29 cells (<xref rid="b32-ijo-45-02-0782" ref-type="bibr">32</xref>), breast cancer MCF-7 cells (<xref rid="b39-ijo-45-02-0782" ref-type="bibr">39</xref>), bladder cancer cells (<xref rid="b17-ijo-45-02-0782" ref-type="bibr">17</xref>,<xref rid="b40-ijo-45-02-0782" ref-type="bibr">40</xref>) and vascular endothelial cells (<xref rid="b41-ijo-45-02-0782" ref-type="bibr">41</xref>). In addition, pterostilbene is capable of inhibiting tumorigenesis and metastasis with minor toxicity <italic>in vivo</italic> (<xref rid="b4-ijo-45-02-0782" ref-type="bibr">4</xref>,<xref rid="b22-ijo-45-02-0782" ref-type="bibr">22</xref>,<xref rid="b38-ijo-45-02-0782" ref-type="bibr">38</xref>). It is safe in doses up to 250 mg/day in human clinical trial, and deserves further investigation as a potential anticancer agent (<xref rid="b42-ijo-45-02-0782" ref-type="bibr">42</xref>). A novel pterostilbene derivative, ANK-199, was therefore designed and synthesized by our group (<xref rid="f1-ijo-45-02-0782" ref-type="fig">Fig. 1B</xref>).</p>
<p>Chewing the mixtures of betel leaf and areca nut is a popular custom in many South and Southeast Asia countries. It is a high risk factor for oral cavity carcinoma (<xref rid="b43-ijo-45-02-0782" ref-type="bibr">43</xref>,<xref rid="b44-ijo-45-02-0782" ref-type="bibr">44</xref>), and is the 4th most common cause of cancer death in Taiwanese males (<xref rid="b45-ijo-45-02-0782" ref-type="bibr">45</xref>). Natural product with high anticancer activity and low toxicity, like pterostilbene, appears to be an ideal candidate to prevent or treat oral cancer, as it can directly contact with human oral mucosa without intravenous administration or surgery (<xref rid="b22-ijo-45-02-0782" ref-type="bibr">22</xref>). The anti-oral cancer activity of pterostilbene derivative, ANK-199, was first investigated in this study. Both normal human oral cell lines and cisplatin-resistant CAR human oral cancer cell lines were used. Here, we report the cytotoxic effect and anticancer mechanism of ANK-199 in human oral cancer CAR cells.</p></sec>
<sec sec-type="materials|methods">
<title>Materials and methods</title>
<sec>
<title>Chemicals and reagents</title>
<p>Dimethyl sulfoxide (DMSO), 3-methyladenine (3-MA), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-2H-tetrazolium bromide (MTT), monodansyl cadaverine (MDC), cisplatin, &#x003B2;-actin antibody, and Tween-20 were obtained from Sigma-Aldrich Corp. (St. Louis, MO, USA). Fetal bovine serum (FBS), L-glutamine, penicillin/streptomycin, Dulbecco&#x02019;s modified Eagle&#x02019;s medium (DMEM), acridine orange (AO), and trypsin-EDTA were purchased from Life Technologies (Carlsbad, CA, USA). The primary antibodies (anti-Atg5, anti-Atg7, anti-Atg12, anti-Atg14, anti-Atg16L1, anti-beclin 1, anti-PI3K class III, anti-LC3-II, and anti-Rubicon) were obtained from Cell Signaling Technology (Danvers, MA, USA), and the horseradish peroxidase (HRP)-conjugated secondary antibodies against rabbit or mouse immunoglobulin for western blot analysis were obtained from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA). ANK-199 &#x0005B;4-(3,5-dimethoxystyryl)phenyl 3-hydroxy-2-(hydroxymethyl)-2-methylpropanoate&#x0005D; was synthesized by Dr Sheng-Chu Kuo.</p></sec>
<sec>
<title>Cell culture</title>
<p>The human oral cancer cell line CAL 27 was obtained from the American Type Culture Collection (ATCC, Manassas, VA, USA). CAR, a cisplatin-resistant cell line, was established by clonal selection of CAL 27 using 10 cycles of 1 passage treatment with 10&#x02013;80 &#x003BC;M of cisplatin followed by a recovery period of another passage. CAR cells were cultivated in DMEM supplemented with 10&#x00025; FBS, 100 &#x003BC;g/ml streptomycin, 100 U/ml penicillin, 2 mM L-glutamine and 80 &#x003BC;M cisplatin. Human normal gingival fibroblasts cells (HGF) and human normal oral keratinocyte cells (OK) were kindly provided by Dr Tzong-Ming Shieh (Department of Dental Hygiene, China Medical University). HGF and OK cells were cultivated in DMEM as previously described for our study (<xref rid="b45-ijo-45-02-0782" ref-type="bibr">45</xref>).</p></sec>
<sec>
<title>Cell viability and morphological examination</title>
<p>CAR cells (1&#x000D7;10<sup>4</sup> cells) in a 96-well plate were incubated with 0, 25, 50, 75 and 100 &#x003BC;M of ANK-199 for 24, 48 and 72 h. For incubation with the autophagy inhibitor, cells were pretreated with 3-MA (10 mM) for 1 h, followed by treatment with or without ANK-199 (50 and 75 &#x003BC;M) for 48 h. After washing the cells, DMEM containing MTT (0.5 mg/ml) of was added to detect viability as previously described (<xref rid="b6-ijo-45-02-0782" ref-type="bibr">6</xref>). The cell viability was expressed as &#x00025; of the control. Cell morphological examination of autophagic vacuoles was determined utilizing a phase-contrast microscope (<xref rid="b46-ijo-45-02-0782" ref-type="bibr">46</xref>,<xref rid="b47-ijo-45-02-0782" ref-type="bibr">47</xref>).</p></sec>
<sec>
<title>Observation of autophagic vacuoles by MDC and acidic vesicular organelles (AVO) with AO staining</title>
<p>CAR cells were seeded on sterile coverslips in tissue culture plates with a density of 5&#x000D7;10<sup>4</sup> cells/per coverslip. After 0, 50, 75 &#x003BC;M of ANK-199 treatment for 24 h, cells were stained with either 1 &#x003BC;g/ml AO or 0.1 mM MDC at 37&#x000B0;C for 10 min. The occurrece of autophagic vacuoles and AVO were immediately observed under fluorescence microscopy (Nikon, Melville, NY, USA) (<xref rid="b46-ijo-45-02-0782" ref-type="bibr">46</xref>&#x02013;<xref rid="b48-ijo-45-02-0782" ref-type="bibr">48</xref>).</p></sec>
<sec>
<title>Autophagy assay by LC3B-GFP imaging and nuclear stain</title>
<p>The induction of autophagy was detected with the Premo&#x02122; Autophagy Sensor (LC3B-GFP) BacMam 2.0 kit (Molecular Probes/Life Technologies). CAR cells were seeded on sterile coverslips in tissue culture plates with a density of 1&#x000D7;10<sup>4</sup> cells/per coverslip. After CAR cells were transfected with LC3B-GFP in accordance with the manufacturer&#x02019;s protocol, cells were treated with 0, 50 and 75 &#x003BC;M of ANK-199 for 24 h. Cells were then fixed on ice with 4&#x00025; paraformaldehyde, and the slides were mounted and analyzed by a fluorescence microscope. After treatments, cells were stained with 4&#x02032;,6-diamidino-2-phenylindole (DAPI, Molecular Probes/Life Technologies) and photographed using a fluorescence microscope (<xref rid="b46-ijo-45-02-0782" ref-type="bibr">46</xref>,<xref rid="b47-ijo-45-02-0782" ref-type="bibr">47</xref>,<xref rid="b49-ijo-45-02-0782" ref-type="bibr">49</xref>).</p></sec>
<sec>
<title>Western blot analysis</title>
<p>CAR cells (1&#x000D7;10<sup>7</sup> cells/75-T flask) were treated with ANK-199 (50 and 75 &#x003BC;M) for 48 h. At the end of incubation, the total proteins were prepared, and the protein concentration was measured by using a BCA assay kit (Pierce Chemical, Rockford, IL, USA). Equal amounts of cell lysates were run on 10&#x00025; SDS-polyacrylamide gel electrophoresis and further employed by immunoblotting as described by Lin <italic>et al</italic> (<xref rid="b46-ijo-45-02-0782" ref-type="bibr">46</xref>).</p></sec>
<sec>
<title>Real-time PCR analysis</title>
<p>CAR cells at a density of 5&#x000D7;10<sup>6</sup> in T75 flasks were incubated with or without 50 and 75 &#x003BC;M of ANK-199 for 24 h. Cells were collected, and total RNA was extracted by the Qiagen RNeasy mini kit (Qiagen Inc., Valencia, CA, USA). Each RNA sample was individually reverse-transcribed using the High Capacity cDNA Reverse Transcription kits (Applied Biosystems, Foster City, CA, USA). Quantitative PCR was assessed for amplifications with 2X SYBR-Green PCR Master mix (Applied Biosystems), as well as forward and reverse primers for <italic>Atg7</italic>, <italic>Atg12</italic>, <italic>beclin 1</italic> and <italic>LC3-II</italic> gene. (Human ATG7-F-CAGCAGTGACGATCGGATGA; human ATG7-R-GACGGGAAGGACATTATCAAACC; human ATG12-F-TGTGGCCTCAGAACAGTTGTTTA; human ATG12-R-CGCCTGAGACTTGCAGTAATGT; human BECN1-F-GGATGGTGTCTCTCGCAGATTC; human BECN1-R-GGTGCCGCCATCAGATG; human LC3-II-F-CCGACCGCTGTAAGGAGGTA; human LC3-II-R-AGGACGGGCAGCTGCTT) Applied Biosystems 7300 Real-Time PCR System was run in triplicate, and each value was expressed in the comparative threshold cycles (CT) method for the housekeeping gene <italic>GAPDH</italic>.</p></sec>
<sec>
<title>cDNA microarray analysis</title>
<p>CAR cells (5&#x000D7;10<sup>6</sup> per T75 flask) were incubated with or without 75 &#x003BC;M of ANK-199 for 24 h. Cells were scraped and collected by centrifugation. The total RNA was subsequently isolated as stated above, and the purity was assessed at 260 and 280 nm using a Nanodrop (ND-1000; Labtech International). Each sample (300 ng) was amplified and labeled using the GeneChip WT Sense Target Labeling and Control Reagents (900652) for Expression Analysis. Hybridization was performed against the Affymetrix GeneChip Human Gene 1.0 ST array. The arrays were hybridized for 17 h at 45&#x000B0;C and 60 rpm. Arrays were subsequently washed (Affymetrix Fluidics Station 450), stained with streptavidin-phycoerythrin (GeneChip Hybridization, Wash, and Stain Kit, 900720), and scanned on an Affymetrix GeneChip Scanner 3000. Resulting data were analyzed by using Expression Console software (Affymetrix) with default RMA parameters. Genes regulated by ANK-199 were determined with a 1.5-fold change. For detection of significantly over-represented GO biological processes, the DAVID functional annotation clustering tool (<ext-link xlink:href="http://david.abcc.ncifcrf.gov" ext-link-type="uri">http://david.abcc.ncifcrf.gov</ext-link>) was used (DAVID Bioinformatics Resources 6.7). Enrichment was determined at DAVID calculated Benjamini value &lt;0.05. Significance of overexpression of individual genes was determined (<xref rid="b50-ijo-45-02-0782" ref-type="bibr">50</xref>).</p></sec>
<sec>
<title>Statistical analysis</title>
<p>All the statistical results were expressed as the mean &#x000B1; SEM of triplicate samples. Statistical analyses of data were done using one-way ANOVA followed by Student&#x02019;s t-test, and <sup>*</sup>p&lt;0.05 and <sup>***</sup>p&lt;0.001 were considered significant.</p></sec></sec>
<sec sec-type="results">
<title>Results</title>
<sec>
<title>ANK-199 exhibits cytotoxicity and inhibits viable CAR cells</title>
<p>CAR cells were treated with different concentrations of ANK-199 for 24, 48 and 72 h. ANK-199 concentration- and time-dependently decreased cell viability of CAR cells (<xref rid="f2-ijo-45-02-0782" ref-type="fig">Fig. 2A</xref>). The half maximal inhibitory concentration (IC<sub>50</sub>) for a 24, 48 and 72-h treatment of ANK-199 in CAR cells were 106.21&#x000B1;3.21, 73.25&#x000B1;4.20 and 32.58&#x000B1;2.39 &#x003BC;M, respectively. To investigate whether the cell death was mediated through apoptosis by ANK-199, cells were treated with 50 and 75 &#x003BC;M ANK-199 for 48 h. The appearance of DNA fragmentation was not observed (data not shown), suggesting that ANK-199 was unable to induce apoptosis in CAR cells. As shown in <xref rid="f2-ijo-45-02-0782" ref-type="fig">Fig. 2B</xref>, ANK-199 was able to induce the formation of autophagic vacuoles in CAR cells in a time-dependent manner in the presence of 50 &#x003BC;M ANK-199 for 24, 48 and 72 h. This result implies that autophagic cell death plays a pivotal role in ANK-199-induced cell death. However, no viability impact and morphological trait change was observed in ANK-199-treated HGF and OK cells, suggesting that ANK-199 has an extremely low toxicity in normal oral cell lines. In accordance with this observation, the IC<sub>50</sub> value of HGF and OK cells is greater than 100 &#x003BC;M (<xref rid="f3-ijo-45-02-0782" ref-type="fig">Fig. 3A and B</xref>). In short, ANK-199-induced cell death of CAR cells is mediated through autophagic death, rather than apoptosis.</p></sec>
<sec>
<title>ANK-199 induces autophagic cell death in CAR cells</title>
<p>To further confirm the formation of autophagosome vesicles in ANK-199-treated CAR cells, the autophagic cell death caused by ANK-199 was monitored by using MDC staining, a popular fluorescent marker that preferentially accumulates in autophagic vacuoles (<xref rid="b46-ijo-45-02-0782" ref-type="bibr">46</xref>,<xref rid="b48-ijo-45-02-0782" ref-type="bibr">48</xref>). After cells were treated with 50 and 75 &#x003BC;M of ANK-199 for 48 h, autophagic vacuoles were easily observed under fluorescence microscopy (<xref rid="f4-ijo-45-02-0782" ref-type="fig">Fig. 4A</xref>). The intensity of MDC staining was directly proportional to the concentration of ANK-199. The ANK-199-triggered autophagic cell death was also examined by using AO staining. In <xref rid="f4-ijo-45-02-0782" ref-type="fig">Fig. 4B</xref>, AO staining of ANK-199-treated CAR cells clearly showed the presence of AVOs within the cytoplasm compared to control. Microtubule-associated protein 1 light-chain 3 (LC3) is an autophagic membrane marker for the detection of early autophagosome formation (<xref rid="b46-ijo-45-02-0782" ref-type="bibr">46</xref>,<xref rid="b49-ijo-45-02-0782" ref-type="bibr">49</xref>). The LC3 distribution in ANK-199-treated CAR cells was also investigated. A more punctate pattern of LC3B-GFP was observed in ANK-199 treated cells (<xref rid="f4-ijo-45-02-0782" ref-type="fig">Fig. 4C</xref>). The occurrence of DNA condensation was also investigated in the presence of 50 and 75 &#x003BC;M ANK-199 for 24 h. No significant change was observed in ANK-199-treated CAR cells under microscope, which means that ANK-199-induced cell death triggered by apoptosis is quite unlikely (<xref rid="f4-ijo-45-02-0782" ref-type="fig">Fig. 4D</xref>). Again, all of the above results support that ANK-199-induced cell death in CAR cells is mediated through the induction of autophagic death instead of apoptosis.</p></sec>
<sec>
<title>ANK-199 upregulates the autophagy-associated protein levels in CAR cells</title>
<p>The protein level of autophagy marker proteins, like Atg complex (Atg5, Atg7, Atg12, Atg14 and Atg16L1), beclin 1, PI3K class III, rubicon and LC3, was also investigated in ANK-199-treated CAR cells. As shown in <xref rid="f5-ijo-45-02-0782" ref-type="fig">Fig. 5</xref>, ANK-199 at 50 and 75 &#x003BC;M increased the protein levels of Atg5, Atg7, Atg12, Atg14 and Atg16L1, beclin 1, PI3K class III and LC3, but decreased the protein level of rubicon in CAR cells. Our results imply that ANK-199 induced autophagic cell death in CAR cells through interfering with the kinase class III/beclin 1/Atg-associated signal pathway.</p></sec>
<sec>
<title>ANK-199 stimulates the autophagy-associated mRNA levels in CAR cells</title>
<p>The mRNA level of autophagy-associated gene was also investigated in ANK-199-treated CAR cells. As shown in <xref rid="f6-ijo-45-02-0782" ref-type="fig">Fig. 6</xref>, ANK-199 is able to enhance the expression level of <italic>Atg7</italic> gene (<xref rid="f6-ijo-45-02-0782" ref-type="fig">Fig. 6A</xref>), <italic>Atg12</italic> gene (<xref rid="f6-ijo-45-02-0782" ref-type="fig">Fig. 6B</xref>), <italic>beclin 1</italic> gene (<xref rid="f6-ijo-45-02-0782" ref-type="fig">Fig. 6C</xref>) and <italic>LC3-II</italic> gene (<xref rid="f6-ijo-45-02-0782" ref-type="fig">Fig. 6D</xref>) in CAR cells.</p></sec>
<sec>
<title>Protection effect of 3-MA against autophagy in ANK-199- treated CAR cells</title>
<p>3-MA, an inhibitor of PI3K kinase class III, has been shown to potently inhibit autophagy-dependent protein degradation and suppress the formation of autophagosomes. CAR cells were pretreated with 3-MA and then exposed to 50 or 75 &#x003BC;M of ANK-199. The formation of autophagic vacuoles and cell viability were then monitored under phase contrast microscopy. Our results showed that 3-MA can inhibit the formation of autophagic vacuoles (<xref rid="f7-ijo-45-02-0782" ref-type="fig">Fig. 7A</xref>) and enhance the viability of ANK-199-treated CAR cells (<xref rid="f7-ijo-45-02-0782" ref-type="fig">Fig. 7B</xref>), suggesting that ANK-199-induced autophagy in CAR cells is mediated through interference with the PI3K kinase class III.</p></sec>
<sec>
<title>Microarray analysis</title>
<p>The cDNA microarray experiments were carried out to examine the gene expression in ANK-199-treated CAR cells. The transcripts of 26 genes were upregulated, while these of 96 genes were downregulated in ANK-199-treated CAR cells (<xref rid="tI-ijo-45-02-0782" ref-type="table">Table I</xref>). The important biological processes and Gene to Go Molecular Function test regulated by ANK-199 are listed in <xref rid="tII-ijo-45-02-0782" ref-type="table">Table II</xref> and <xref rid="tIII-ijo-45-02-0782" ref-type="table">Table III</xref>. The formation of autophagosomes and autophagolysosome was observed during the course of ANK-199 induced autophagic cell death. In a good agreement with above results, membrane formation or reorganization is closely associated with following biological processes: cellular component biogenesis, actin cytoskeleton organization, regulation of actin filament-based process, regulation of cytoskeleton organization, regulation of actin polymerization or depolymerization, regulation of actin filament length.</p></sec></sec>
<sec sec-type="discussion">
<title>Discussion</title>
<p>Apoptosis, autophagy and necrosis are three major routes that lead to cell death (<xref rid="b51-ijo-45-02-0782" ref-type="bibr">51</xref>). Both apoptosis and autophagy belong to the form of cell programmed death, but necrosis does not (<xref rid="b51-ijo-45-02-0782" ref-type="bibr">51</xref>&#x02013;<xref rid="b54-ijo-45-02-0782" ref-type="bibr">54</xref>). Autophagic death can promote cell survival or cell death when cells experience stress, such as damage, nutrient starvation, aging and pathogen infection (<xref rid="b55-ijo-45-02-0782" ref-type="bibr">55</xref>&#x02013;<xref rid="b57-ijo-45-02-0782" ref-type="bibr">57</xref>). Indeed, induction of autophagic death for cancer cells is thought to be one of the best strategies in chemotherapy (<xref rid="b58-ijo-45-02-0782" ref-type="bibr">58</xref>&#x02013;<xref rid="b60-ijo-45-02-0782" ref-type="bibr">60</xref>). Not only many autophagy-related proteins (Atgs) are involved in this process, but also a specific morphological and biochemical modification can be observed (<xref rid="b56-ijo-45-02-0782" ref-type="bibr">56</xref>,<xref rid="b60-ijo-45-02-0782" ref-type="bibr">60</xref>,<xref rid="b61-ijo-45-02-0782" ref-type="bibr">61</xref>). Autophagy is first triggered by membrane nucleation, which is mediated by phosphatidylinositol 3-kinase (PI3K) class III, beclin 1 (the mammalian ortholog of yeast ATG6), rubicon and Atg14 (<xref rid="b62-ijo-45-02-0782" ref-type="bibr">62</xref>&#x02013;<xref rid="b64-ijo-45-02-0782" ref-type="bibr">64</xref>). The cytoplasm and phagophore of various organelles are then sequestered by a membrane to form an autophagosomes. Atg16L1-Atg12-Atg7-Atg5 complex and microtubule-associated protein 1 light chain 3 type II (LC3-II) (membrane-bound form) are absolutely required for autophagosome formation (<xref rid="b55-ijo-45-02-0782" ref-type="bibr">55</xref>,<xref rid="b65-ijo-45-02-0782" ref-type="bibr">65</xref>&#x02013;<xref rid="b67-ijo-45-02-0782" ref-type="bibr">67</xref>). The autophagosome fuses with the lysosome then forming autophagolysosome, eventually resulting in the degradation of the captured proteins or organelles by lysosomal enzymes (<xref rid="b55-ijo-45-02-0782" ref-type="bibr">55</xref>,<xref rid="b68-ijo-45-02-0782" ref-type="bibr">68</xref>,<xref rid="b69-ijo-45-02-0782" ref-type="bibr">69</xref>). Once cells undergo autophagic cell death, an autophagosomal marker LC3-II increases from the conversion of LC3-I (<xref rid="b70-ijo-45-02-0782" ref-type="bibr">70</xref>,<xref rid="b71-ijo-45-02-0782" ref-type="bibr">71</xref>).</p>
<p>Our results demonstrated that the ANK-199 can induce the formation of autophagic vesicle (<xref rid="f4-ijo-45-02-0782" ref-type="fig">Fig. 4A</xref>) and acidic vesicular organelles (<xref rid="f4-ijo-45-02-0782" ref-type="fig">Fig. 4B</xref>). It also simultaneously enhances the protein level of autophagic proteins, Atg complex, beclin 1, PI3K class III and LC3-II (<xref rid="f5-ijo-45-02-0782" ref-type="fig">Fig. 5</xref>), and mRNA expression of autophagic genes <italic>Atg7</italic>, <italic>Atg12</italic>, <italic>beclin 1</italic> and <italic>LC3-II</italic> (<xref rid="f6-ijo-45-02-0782" ref-type="fig">Fig. 6</xref>). More importantly, 3-MA, a specific inhibitor of PI3K kinase class III, can inhibit the autophagic vesicle formation induced by ANK-199 (<xref rid="f7-ijo-45-02-0782" ref-type="fig">Fig. 7</xref>). All of the above results support that ANK-199-induced cell death in CAR cells is mediated through the induction of autophagic death. This molecular signaling pathway induced by ANK-199 is summarized in <xref rid="f8-ijo-45-02-0782" ref-type="fig">Fig. 8</xref>.</p>
<p>However, ANK-199 treatment duration for CAR cells is 72 h. We cannot completely rule out the possibility that apoptotic cell death or other signaling pathways can be induced by ANK-199 for longer treatment time. A series of pterostilbene derivatives have been synthesized as less toxic anticancer candidates (<xref rid="b30-ijo-45-02-0782" ref-type="bibr">30</xref>,<xref rid="b40-ijo-45-02-0782" ref-type="bibr">40</xref>,<xref rid="b72-ijo-45-02-0782" ref-type="bibr">72</xref>,<xref rid="b73-ijo-45-02-0782" ref-type="bibr">73</xref>). ANK-199 is less toxic than pterostilbene (unpublished data). More importantly, ANK-199 has much less cytotoxicity in the normal oral cells (HGF and OK) than that in CAR cells (<xref rid="f3-ijo-45-02-0782" ref-type="fig">Fig. 3</xref>). This is a novel finding regarding that ANK-199 represents a promising candidate as an anti-oral cancer drug with low toxicity to normal cells. Results presented in this study show that ANK-199 may become a novel therapeutic reagent for the treatment of oral cancer in the near future (patent pending).</p></sec></body>
<back>
<ack>
<title>Acknowledgements</title>
<p>This study was supported by AnnCare Bio-Tech Center Inc. and a research grant from the Ministry of Health and Welfare, Executive Yuan, Taiwan (DOH101-TD-C-111-005) awarded to S.-C.K.</p></ack>
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<floats-group>
<fig id="f1-ijo-45-02-0782" position="float">
<label>Figure 1</label>
<caption>
<p>Chemical structures of (A) pterostilbene and (B) ANK-199.</p></caption>
<graphic xlink:href="IJO-45-02-0782-g00.gif"/></fig>
<fig id="f2-ijo-45-02-0782" position="float">
<label>Figure 2</label>
<caption>
<p>Effect of ANK-199 on CAR cell viability and morphological examination. CAR cells were treated with or without various concentrations of ANK-199 for 24, 28 and 72 h. (A) Cell viability was measured by MTT assay. Data are presented as the mean &#x000B1; SEM (n=3). <sup>***</sup>p&lt;0.001 vs. vehicle control. (B) Cells were photographed with a phase-contrast microscope.</p></caption>
<graphic xlink:href="IJO-45-02-0782-g01.gif"/></fig>
<fig id="f3-ijo-45-02-0782" position="float">
<label>Figure 3</label>
<caption>
<p>Effect of ANK-199 on normal oral cells. (A) Normal human gingival fibroblasts cells (HGF) and (B) normal human oral keratinocyte cells (OK) cells after exposure to various concentrations of ANK-199 for 72 h were determined by MTT assay. The data shown represent the mean &#x000B1; SEM (n=3).</p></caption>
<graphic xlink:href="IJO-45-02-0782-g02.gif"/></fig>
<fig id="f4-ijo-45-02-0782" position="float">
<label>Figure 4</label>
<caption>
<p>Effect of ANK-199 on autophagic death in CAR cells. Cells in the presence and absence of ANK-199 challenge for 24 h were harvested. (A) The autophagolysosome marker was probed by MDC. (B) AO staining was used to detect AVO. (C) LC3B expression was determined by Premo Autophagy Sensor kit. (D) DNA condensation (an apoptotic characteristic) was tested utilizing DAPI staining.</p></caption>
<graphic xlink:href="IJO-45-02-0782-g03.gif"/></fig>
<fig id="f5-ijo-45-02-0782" position="float">
<label>Figure 5</label>
<caption>
<p>Effect of ANK-199 on autophagy-regulated signaling in CAR cells. Immunoblot analysis of the molecules of vehicle control or ANK-199 treatment at 50 and 75 &#x003BC;M of CAR cells for 48 h showed autophagy-modulated signal molecules (Atg5, Atg7, Atg12, Atg14, Atg16L1, beclin 1, PI3K class III, rubicon, LC3) as described in Materials and methods. The anti-&#x003B2;-actin mAb was used as an internal control for loading.</p></caption>
<graphic xlink:href="IJO-45-02-0782-g04.gif"/></fig>
<fig id="f6-ijo-45-02-0782" position="float">
<label>Figure 6</label>
<caption>
<p>Effect of ANK-199 on autophagy-related gene expression in CAR cells. Total RNA was extracted from CAR cells after ANK-199 treatment, and real-time PCR was performed for different specific primers, including (A) <italic>Atg7</italic>, (B) <italic>Atg12</italic>, (C) <italic>beclin-1</italic> and (D) <italic>LC3-II</italic> gene levels. GAPDH is as an internal control gene. The results are given as mean &#x000B1; SEM (n=3), <sup>*</sup>p&lt;0.05 and <sup>***</sup>p&lt;0.001 vs. vehicle control.</p></caption>
<graphic xlink:href="IJO-45-02-0782-g05.gif"/></fig>
<fig id="f7-ijo-45-02-0782" position="float">
<label>Figure 7</label>
<caption>
<p>Effect of 3-MA on autophagic death in ANK-199-treated CAR cells. Cells were pretreated with 10 mM 3-MA and then exposed to 50 or 75 &#x003BC;M of ANK-199 for 48 h. (A) The autophagic vacuole formation was assessed using MDC staining, and (B) MTT assay was applied to estimate cell viability. All values are expressed as mean &#x000B1; SEM (n=3). <sup>***</sup>p&lt;0.001 vs. vehicle control or ANK-199 treatment groups.</p></caption>
<graphic xlink:href="IJO-45-02-0782-g06.gif"/></fig>
<fig id="f8-ijo-45-02-0782" position="float">
<label>Figure 8</label>
<caption>
<p>Proposed schematic molecular signaling for ANK-199-triggered autophagy in cisplatin-resistant human oral cancer CAR cells.</p></caption>
<graphic xlink:href="IJO-45-02-0782-g07.gif"/></fig>
<table-wrap id="tI-ijo-45-02-0782" position="float">
<label>Table I</label>
<caption>
<p>The genes with more than 1.5-fold changes in mRNA levels in CAR cells after ANK-199 (50 &#x003BC;M) 24-h treatment identified by DNA microarray.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th valign="bottom" align="left">Accession</th>
<th valign="bottom" align="center">Gene</th>
<th valign="bottom" align="center">FC</th></tr></thead>
<tbody>
<tr>
<td valign="top" align="left">XR_042379</td>
<td valign="top" align="left">LOC401875: hypothetical LOC401875</td>
<td valign="top" align="right">7.34</td></tr>
<tr>
<td valign="top" align="left">NM_198581</td>
<td valign="top" align="left">ZC3H6: zinc finger CCCH-type containing 6</td>
<td valign="top" align="right">5.68</td></tr>
<tr>
<td valign="top" align="left">NM_004755</td>
<td valign="top" align="left">RPS6KA5: ribosomal protein S6 kinase, 90 kDa, polypeptide 5</td>
<td valign="top" align="right">3.27</td></tr>
<tr>
<td valign="top" align="left">NM_006472</td>
<td valign="top" align="left">TXNIP: thioredoxin interacting protein</td>
<td valign="top" align="right">3.00</td></tr>
<tr>
<td valign="top" align="left">NM_001506</td>
<td valign="top" align="left">GPR32: G protein-coupled receptor 32</td>
<td valign="top" align="right">2.15</td></tr>
<tr>
<td valign="top" align="left">NM_018387</td>
<td valign="top" align="left">STRBP: spermatid perinuclear RNA binding protein</td>
<td valign="top" align="right">2.04</td></tr>
<tr>
<td valign="top" align="left">BC007928</td>
<td valign="top" align="left">C21orf119: chromosome 21 open reading frame 119</td>
<td valign="top" align="right">1.93</td></tr>
<tr>
<td valign="top" align="left">BC108718</td>
<td valign="top" align="left">LOC389765: similar to KIF27C</td>
<td valign="top" align="right">1.88</td></tr>
<tr>
<td valign="top" align="left">NM_153335</td>
<td valign="top" align="left">LYK5: protein kinase LYK5</td>
<td valign="top" align="right">1.86</td></tr>
<tr>
<td valign="top" align="left">ENST00000021776</td>
<td valign="top" align="left">CCT8L1: chaperonin containing TCP1, subunit 8 (theta)-like 1</td>
<td valign="top" align="right">1.81</td></tr>
<tr>
<td valign="top" align="left">NM_018434</td>
<td valign="top" align="left">RNF130: ring finger protein 130</td>
<td valign="top" align="right">1.75</td></tr>
<tr>
<td valign="top" align="left">NM_181684</td>
<td valign="top" align="left">KRTAP12-2: keratin associated protein 12-2</td>
<td valign="top" align="right">1.72</td></tr>
<tr>
<td valign="top" align="left">NM_201266</td>
<td valign="top" align="left">NRP2: neuropilin 2</td>
<td valign="top" align="right">1.71</td></tr>
<tr>
<td valign="top" align="left">NM_181351</td>
<td valign="top" align="left">NCAM1: neural cell adhesion molecule 1</td>
<td valign="top" align="right">1.63</td></tr>
<tr>
<td valign="top" align="left">NM_004064</td>
<td valign="top" align="left">CDKN1B: cyclin-dependent kinase inhibitor 1B (p27, Kip1)</td>
<td valign="top" align="right">1.63</td></tr>
<tr>
<td valign="top" align="left">NM_007051</td>
<td valign="top" align="left">FAF1: Fas (TNFRSF6) associated factor 1</td>
<td valign="top" align="right">1.62</td></tr>
<tr>
<td valign="top" align="left">NM_001039752</td>
<td valign="top" align="left">SLC22A10: solute carrier family 22, member 10</td>
<td valign="top" align="right">1.62</td></tr>
<tr>
<td valign="top" align="left">NM_198993</td>
<td valign="top" align="left">STAC2: SH3 and cysteine rich domain 2</td>
<td valign="top" align="right">1.62</td></tr>
<tr>
<td valign="top" align="left">NM_018257</td>
<td valign="top" align="left">PCMTD2: protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2</td>
<td valign="top" align="right">1.62</td></tr>
<tr>
<td valign="top" align="left">NM_000901</td>
<td valign="top" align="left">NR3C2: nuclear receptor subfamily 3, group C, member 2</td>
<td valign="top" align="right">1.62</td></tr>
<tr>
<td valign="top" align="left">BC093665</td>
<td valign="top" align="left">FAM92B: family with sequence similarity 92, member B</td>
<td valign="top" align="right">1.56</td></tr>
<tr>
<td valign="top" align="left">NM_016609</td>
<td valign="top" align="left">SLC22A17: solute carrier family 22, member 17</td>
<td valign="top" align="right">1.55</td></tr>
<tr>
<td valign="top" align="left">NM_181605</td>
<td valign="top" align="left">KRTAP6-3: keratin associated protein 6-3</td>
<td valign="top" align="right">1.55</td></tr>
<tr>
<td valign="top" align="left">XM_938903</td>
<td valign="top" align="left">LOC649839: similar to large subunit ribosomal protein L36a</td>
<td valign="top" align="right">1.53</td></tr>
<tr>
<td valign="top" align="left">BC021739</td>
<td valign="top" align="left">LOC554201: hypothetical LOC554201</td>
<td valign="top" align="right">1.53</td></tr>
<tr>
<td valign="top" align="left">ENST00000329244</td>
<td valign="top" align="left">LOC100132169: similar to hCG1742852</td>
<td valign="top" align="right">1.50</td></tr>
<tr>
<td valign="top" align="left">NM_021109</td>
<td valign="top" align="left">TMSB4X: thymosin beta 4, X-linked</td>
<td valign="top" align="right">&#x02212;1.50</td></tr>
<tr>
<td valign="top" align="left">NM_019896</td>
<td valign="top" align="left">POLE4: polymerase (DNA-directed), epsilon 4 (p12 subunit)</td>
<td valign="top" align="right">&#x02212;1.51</td></tr>
<tr>
<td valign="top" align="left">NM_015475</td>
<td valign="top" align="left">FAM98A: family with sequence similarity 98, member A</td>
<td valign="top" align="right">&#x02212;1.51</td></tr>
<tr>
<td valign="top" align="left">NM_006136</td>
<td valign="top" align="left">CAPZA2: capping protein (actin filament) muscle Z-line, alpha 2</td>
<td valign="top" align="right">&#x02212;1.51</td></tr>
<tr>
<td valign="top" align="left">NM_001128619</td>
<td valign="top" align="left">LUZP6: leucine zipper protein 6</td>
<td valign="top" align="right">&#x02212;1.51</td></tr>
<tr>
<td valign="top" align="left">NM_014248</td>
<td valign="top" align="left">RBX1: ring-box 1</td>
<td valign="top" align="right">&#x02212;1.52</td></tr>
<tr>
<td valign="top" align="left">NM_024755</td>
<td valign="top" align="left">SLTM: SAFB-like, transcription modulator</td>
<td valign="top" align="right">&#x02212;1.53</td></tr>
<tr>
<td valign="top" align="left">NM_003168</td>
<td valign="top" align="left">SUPT4H1: suppressor of Ty 4 homolog 1 (<italic>S. cerevisiae</italic>)</td>
<td valign="top" align="right">&#x02212;1.53</td></tr>
<tr>
<td valign="top" align="left">NM_017892</td>
<td valign="top" align="left">PRPF40A: PRP40 pre-mRNA processing factor 40 homolog A (<italic>S. cerevisiae</italic>)</td>
<td valign="top" align="right">&#x02212;1.53</td></tr>
<tr>
<td valign="top" align="left">NM_004776</td>
<td valign="top" align="left">B4GALT5: UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5</td>
<td valign="top" align="right">&#x02212;1.53</td></tr>
<tr>
<td valign="top" align="left">NM_002090</td>
<td valign="top" align="left">CXCL3: chemokine (C-X-C motif) ligand 3</td>
<td valign="top" align="right">&#x02212;1.53</td></tr>
<tr>
<td valign="top" align="left">NM_001005333</td>
<td valign="top" align="left">MAGED1: melanoma antigen family D, 1</td>
<td valign="top" align="right">&#x02212;1.53</td></tr>
<tr>
<td valign="top" align="left">NM_000937</td>
<td valign="top" align="left">POLR2A: polymerase (RNA) II (DNA directed) polypeptide A, 220 kDa</td>
<td valign="top" align="right">&#x02212;1.54</td></tr>
<tr>
<td valign="top" align="left">NM_001349</td>
<td valign="top" align="left">DARS: aspartyl-tRNA synthetase</td>
<td valign="top" align="right">&#x02212;1.55</td></tr>
<tr>
<td valign="top" align="left">NM_003348</td>
<td valign="top" align="left">UBE2N: ubiquitin-conjugating enzyme E2N (UBC13 homolog, yeast)</td>
<td valign="top" align="right">&#x02212;1.56</td></tr>
<tr>
<td valign="top" align="left">NM_001614</td>
<td valign="top" align="left">ACTG1: actin, gamma 1</td>
<td valign="top" align="right">&#x02212;1.56</td></tr>
<tr>
<td valign="top" align="left">NM_053024</td>
<td valign="top" align="left">PFN2: profilin 2</td>
<td valign="top" align="right">&#x02212;1.56</td></tr>
<tr>
<td valign="top" align="left">NM_003010</td>
<td valign="top" align="left">MAP2K4: mitogen-activated protein kinase kinase 4</td>
<td valign="top" align="right">&#x02212;1.57</td></tr>
<tr>
<td valign="top" align="left">NM_001099771</td>
<td valign="top" align="left">A26C1B: ANKRD26-like family C, member 1B</td>
<td valign="top" align="right">&#x02212;1.57</td></tr>
<tr>
<td valign="top" align="left">NM_006000</td>
<td valign="top" align="left">TUBA4A: tubulin, alpha 4a</td>
<td valign="top" align="right">&#x02212;1.58</td></tr>
<tr>
<td valign="top" align="left">NM_133494</td>
<td valign="top" align="left">NEK7: NIMA (never in mitosis gene a)-related kinase 7</td>
<td valign="top" align="right">&#x02212;1.59</td></tr>
<tr>
<td valign="top" align="left">NM_173647</td>
<td valign="top" align="left">RNF149: ring finger protein 149</td>
<td valign="top" align="right">&#x02212;1.59</td></tr>
<tr>
<td valign="top" align="left">NM_182917</td>
<td valign="top" align="left">EIF4G1: eukaryotic translation initiation factor 4 gamma, 1</td>
<td valign="top" align="right">&#x02212;1.59</td></tr>
<tr>
<td valign="top" align="left">NM_002599</td>
<td valign="top" align="left">PDE2A: phosphodiesterase 2A, cGMP-stimulated</td>
<td valign="top" align="right">&#x02212;1.62</td></tr>
<tr>
<td valign="top" align="left">NM_005066</td>
<td valign="top" align="left">SFPQ: splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated)</td>
<td valign="top" align="right">&#x02212;1.64</td></tr>
<tr>
<td valign="top" align="left">NM_001039479</td>
<td valign="top" align="left">KIAA0317: KIAA0317</td>
<td valign="top" align="right">&#x02212;1.64</td></tr>
<tr>
<td valign="top" align="left">NM_001127649</td>
<td valign="top" align="left">PEX26: peroxisomal biogenesis factor 26</td>
<td valign="top" align="right">&#x02212;1.64</td></tr>
<tr>
<td valign="top" align="left">NM_015153</td>
<td valign="top" align="left">PHF3: PHD finger protein 3</td>
<td valign="top" align="right">&#x02212;1.64</td></tr>
<tr>
<td valign="top" align="left">NM_007189</td>
<td valign="top" align="left">ABCF2: ATP-binding cassette, sub-family F (GCN20), member 2</td>
<td valign="top" align="right">&#x02212;1.64</td></tr>
<tr>
<td valign="top" align="left">NM_007126</td>
<td valign="top" align="left">VCP: valosin-containing protein</td>
<td valign="top" align="right">&#x02212;1.64</td></tr>
<tr>
<td valign="top" align="left">NM_012234</td>
<td valign="top" align="left">RYBP: RING1 and YY1 binding protein</td>
<td valign="top" align="right">&#x02212;1.65</td></tr>
<tr>
<td valign="top" align="left">NR_004845</td>
<td valign="top" align="left">LOC644936: cytoplasmic beta-actin pseudogene</td>
<td valign="top" align="right">&#x02212;1.65</td></tr>
<tr>
<td valign="top" align="left">NM_014795</td>
<td valign="top" align="left">ZEB2: zinc finger E-box binding homeobox 2</td>
<td valign="top" align="right">&#x02212;1.66</td></tr>
<tr>
<td valign="top" align="left">NM_005998</td>
<td valign="top" align="left">CCT3: chaperonin containing TCP1, subunit 3 (gamma)</td>
<td valign="top" align="right">&#x02212;1.67</td></tr>
<tr>
<td valign="top" align="left">NM_001099692</td>
<td valign="top" align="left">EIF5AL1: eukaryotic translation initiation factor 5A-like 1</td>
<td valign="top" align="right">&#x02212;1.67</td></tr>
<tr>
<td valign="top" align="left">NM_138689</td>
<td valign="top" align="left">PPP1R14B: protein phosphatase 1, regulatory (inhibitor) subunit 14B</td>
<td valign="top" align="right">&#x02212;1.67</td></tr>
<tr>
<td valign="top" align="left">NM_015665</td>
<td valign="top" align="left">AAAS: achalasia, adrenocortical insufficiency, alacrimia (Allgrove, triple-A)</td>
<td valign="top" align="right">&#x02212;1.67</td></tr>
<tr>
<td valign="top" align="left">NM_001099692</td>
<td valign="top" align="left">EIF5AL1: eukaryotic translation initiation factor 5A-like 1</td>
<td valign="top" align="right">&#x02212;1.68</td></tr>
<tr>
<td valign="top" align="left">NM_001099692</td>
<td valign="top" align="left">EIF5AL1: eukaryotic translation initiation factor 5A-like 1</td>
<td valign="top" align="right">&#x02212;1.68</td></tr>
<tr>
<td valign="top" align="left">NM_002154</td>
<td valign="top" align="left">HSPA4: heat shock 70 kDa protein 4</td>
<td valign="top" align="right">&#x02212;1.68</td></tr>
<tr>
<td valign="top" align="left">NM_013451</td>
<td valign="top" align="left">FER1L3: fer-1-like 3, myoferlin (<italic>C. elegans</italic>)</td>
<td valign="top" align="right">&#x02212;1.70</td></tr>
<tr>
<td valign="top" align="left">NM_000303</td>
<td valign="top" align="left">PMM2: phosphomannomutase 2</td>
<td valign="top" align="right">&#x02212;1.71</td></tr>
<tr>
<td valign="top" align="left">NM_002795</td>
<td valign="top" align="left">PSMB3: proteasome (prosome, macropain) subunit, beta type, 3</td>
<td valign="top" align="right">&#x02212;1.71</td></tr>
<tr>
<td valign="top" align="left">NM_001363</td>
<td valign="top" align="left">DKC1: dyskeratosis congenita 1, dyskerin</td>
<td valign="top" align="right">&#x02212;1.71</td></tr>
<tr>
<td valign="top" align="left">NM_001102</td>
<td valign="top" align="left">ACTN1: actinin, alpha 1</td>
<td valign="top" align="right">&#x02212;1.73</td></tr>
<tr>
<td valign="top" align="left">NM_004299</td>
<td valign="top" align="left">ABCB7: ATP-binding cassette, sub-family B (MDR/TAP), member 7</td>
<td valign="top" align="right">&#x02212;1.73</td></tr>
<tr>
<td valign="top" align="left">NM_005857</td>
<td valign="top" align="left">ZMPSTE24: zinc metallopeptidase (STE24 homolog, <italic>S. cerevisiae</italic>)</td>
<td valign="top" align="right">&#x02212;1.74</td></tr>
<tr>
<td valign="top" align="left">NM_152265</td>
<td valign="top" align="left">BTF3L4: basic transcription factor 3-like 4</td>
<td valign="top" align="right">&#x02212;1.74</td></tr>
<tr>
<td valign="top" align="left">NM_020409</td>
<td valign="top" align="left">MRPL47: mitochondrial ribosomal protein L47</td>
<td valign="top" align="right">&#x02212;1.74</td></tr>
<tr>
<td valign="top" align="left">NM_006148</td>
<td valign="top" align="left">LASP1: LIM and SH3 protein 1</td>
<td valign="top" align="right">&#x02212;1.76</td></tr>
<tr>
<td valign="top" align="left">BC065192</td>
<td valign="top" align="left">C2orf12: chromosome 2 open reading frame 12</td>
<td valign="top" align="right">&#x02212;1.76</td></tr>
<tr>
<td valign="top" align="left">NM_001414</td>
<td valign="top" align="left">EIF2B1: eukaryotic translation initiation factor 2B, subunit 1 alpha, 26 kDa</td>
<td valign="top" align="right">&#x02212;1.78</td></tr>
<tr>
<td valign="top" align="left">NM_003222</td>
<td valign="top" align="left">TFAP2C: transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)</td>
<td valign="top" align="right">&#x02212;1.78</td></tr>
<tr>
<td valign="top" align="left">NM_007350</td>
<td valign="top" align="left">PHLDA1: pleckstrin homology-like domain, family A, member 1</td>
<td valign="top" align="right">&#x02212;1.79</td></tr>
<tr>
<td valign="top" align="left">ENST00000242577</td>
<td valign="top" align="left">DYNLL1: dynein, light chain, LC8-type 1</td>
<td valign="top" align="right">&#x02212;1.79</td></tr>
<tr>
<td valign="top" align="left">NM_032830</td>
<td valign="top" align="left">CIRH1A: cirrhosis, autosomal recessive 1A (cirhin)</td>
<td valign="top" align="right">&#x02212;1.79</td></tr>
<tr>
<td valign="top" align="left">NM_152265</td>
<td valign="top" align="left">BTF3L4: basic transcription factor 3-like 4</td>
<td valign="top" align="right">&#x02212;1.80</td></tr>
<tr>
<td valign="top" align="left">NM_176816</td>
<td valign="top" align="left">CCDC125: coiled-coil domain containing 125</td>
<td valign="top" align="right">&#x02212;1.80</td></tr>
<tr>
<td valign="top" align="left">NM_001039690</td>
<td valign="top" align="left">CTF8: chromosome transmission fidelity factor 8 homolog (<italic>S. cerevisiae</italic>)</td>
<td valign="top" align="right">&#x02212;1.83</td></tr>
<tr>
<td valign="top" align="left">NM_001127257</td>
<td valign="top" align="left">SLC39A10: solute carrier family 39 (zinc transporter), member 10</td>
<td valign="top" align="right">&#x02212;1.84</td></tr>
<tr>
<td valign="top" align="left">XM_001716411</td>
<td valign="top" align="left">LOC128322: hypothetical LOC128322</td>
<td valign="top" align="right">&#x02212;1.86</td></tr>
<tr>
<td valign="top" align="left">NM_002370</td>
<td valign="top" align="left">MAGOH: mago-nashi homolog, proliferation-associated (Drosophila)</td>
<td valign="top" align="right">&#x02212;1.90</td></tr>
<tr>
<td valign="top" align="left">NM_138578</td>
<td valign="top" align="left">BCL2L1: BCL2-like 1</td>
<td valign="top" align="right">&#x02212;1.91</td></tr>
<tr>
<td valign="top" align="left">NM_003580</td>
<td valign="top" align="left">NSMAF: neutral sphingomyelinase (N-SMase) activation associated factor</td>
<td valign="top" align="right">&#x02212;1.92</td></tr>
<tr>
<td valign="top" align="left">NM_015922</td>
<td valign="top" align="left">NSDHL: NAD(P) dependent steroid dehydrogenase-like</td>
<td valign="top" align="right">&#x02212;1.92</td></tr>
<tr>
<td valign="top" align="left">NM_001797</td>
<td valign="top" align="left">CDH11: cadherin 11, type 2, OB-cadherin (osteoblast)</td>
<td valign="top" align="right">&#x02212;1.93</td></tr>
<tr>
<td valign="top" align="left">NM_021242</td>
<td valign="top" align="left">MID1IP1: MID1 interacting protein 1 &#x0005B;gastrulation specific G12 homolog (zebrafish)&#x0005D;</td>
<td valign="top" align="right">&#x02212;1.93</td></tr>
<tr>
<td valign="top" align="left">NM_005968</td>
<td valign="top" align="left">HNRNPM: heterogeneous nuclear ribonucleoprotein M</td>
<td valign="top" align="right">&#x02212;1.95</td></tr>
<tr>
<td valign="top" align="left">NM_012338</td>
<td valign="top" align="left">TSPAN12: tetraspanin 12</td>
<td valign="top" align="right">&#x02212;1.97</td></tr>
<tr>
<td valign="top" align="left">NM_014953</td>
<td valign="top" align="left">DIS3: DIS3 mitotic control homolog (S. cerevisiae)</td>
<td valign="top" align="right">&#x02212;2.02</td></tr>
<tr>
<td valign="top" align="left">NM_003130</td>
<td valign="top" align="left">SRI: sorcin</td>
<td valign="top" align="right">&#x02212;2.11</td></tr>
<tr>
<td valign="top" align="left">NM_018993</td>
<td valign="top" align="left">RIN2: Ras and Rab interactor 2</td>
<td valign="top" align="right">&#x02212;2.12</td></tr>
<tr>
<td valign="top" align="left">NM_004093</td>
<td valign="top" align="left">EFNB2: ephrin-B2</td>
<td valign="top" align="right">&#x02212;2.13</td></tr>
<tr>
<td valign="top" align="left">NM_032256</td>
<td valign="top" align="left">TMEM117: transmembrane protein 117</td>
<td valign="top" align="right">&#x02212;2.14</td></tr>
<tr>
<td valign="top" align="left">NM_005415</td>
<td valign="top" align="left">SLC20A1: solute carrier family 20 (phosphate transporter), member 1</td>
<td valign="top" align="right">&#x02212;2.15</td></tr>
<tr>
<td valign="top" align="left">NM_017872</td>
<td valign="top" align="left">THG1L: tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)</td>
<td valign="top" align="right">&#x02212;2.20</td></tr>
<tr>
<td valign="top" align="left">NM_014624</td>
<td valign="top" align="left">S100A6: S100 calcium binding protein A6</td>
<td valign="top" align="right">&#x02212;2.24</td></tr>
<tr>
<td valign="top" align="left">NM_153618</td>
<td valign="top" align="left">SEMA6D: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D</td>
<td valign="top" align="right">&#x02212;2.27</td></tr>
<tr>
<td valign="top" align="left">NM_014604</td>
<td valign="top" align="left">TAX1BP3: Tax1 (human T-cell leukemia virus type I) binding protein 3</td>
<td valign="top" align="right">&#x02212;2.27</td></tr>
<tr>
<td valign="top" align="left">NM_033505</td>
<td valign="top" align="left">SELI: selenoprotein I</td>
<td valign="top" align="right">&#x02212;2.30</td></tr>
<tr>
<td valign="top" align="left">NM_003666</td>
<td valign="top" align="left">BLZF1: basic leucine zipper nuclear factor 1</td>
<td valign="top" align="right">&#x02212;2.35</td></tr>
<tr>
<td valign="top" align="left">NM_002714</td>
<td valign="top" align="left">PPP1R10: protein phosphatase 1, regulatory (inhibitor) subunit 10</td>
<td valign="top" align="right">&#x02212;2.50</td></tr>
<tr>
<td valign="top" align="left">NM_002714</td>
<td valign="top" align="left">PPP1R10: protein phosphatase 1, regulatory (inhibitor) subunit 10</td>
<td valign="top" align="right">&#x02212;2.50</td></tr>
<tr>
<td valign="top" align="left">NM_002714</td>
<td valign="top" align="left">PPP1R10: protein phosphatase 1, regulatory (inhibitor) subunit 10</td>
<td valign="top" align="right">&#x02212;2.50</td></tr>
<tr>
<td valign="top" align="left">NR_003003</td>
<td valign="top" align="left">SCARNA17: small Cajal body-specific RNA 17</td>
<td valign="top" align="right">&#x02212;2.51</td></tr>
<tr>
<td valign="top" align="left">NR_002738</td>
<td valign="top" align="left">SNORD57: small nucleolar RNA, C/D box 57</td>
<td valign="top" align="right">&#x02212;2.57</td></tr>
<tr>
<td valign="top" align="left">NM_006080</td>
<td valign="top" align="left">SEMA3A: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A</td>
<td valign="top" align="right">&#x02212;2.57</td></tr>
<tr>
<td valign="top" align="left">NM_009587</td>
<td valign="top" align="left">LGALS9: lectin, galactoside-binding, soluble, 9</td>
<td valign="top" align="right">&#x02212;2.65</td></tr>
<tr>
<td valign="top" align="left">NM_003234</td>
<td valign="top" align="left">TFRC: transferrin receptor (p90, CD71)</td>
<td valign="top" align="right">&#x02212;2.85</td></tr>
<tr>
<td valign="top" align="left">NM_138966</td>
<td valign="top" align="left">NETO1: neuropilin (NRP) and tolloid (TLL)-like 1</td>
<td valign="top" align="right">&#x02212;2.97</td></tr>
<tr>
<td valign="top" align="left">NM_001098272</td>
<td valign="top" align="left">HMGCS1: 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble)</td>
<td valign="top" align="right">&#x02212;2.97</td></tr>
<tr>
<td valign="top" align="left">NM_006350</td>
<td valign="top" align="left">FST: follistatin</td>
<td valign="top" align="right">&#x02212;4.21</td></tr>
<tr>
<td valign="top" align="left">NM_024090</td>
<td valign="top" align="left">ELOVL6: ELOVL family member 6, elongation of long chain fatty acids(FEN1/Elo2, SUR4/Elo3-like, yeast)</td>
<td valign="top" align="right">&#x02212;4.46</td></tr>
<tr>
<td valign="top" align="left">NM_005328</td>
<td valign="top" align="left">HAS2: hyaluronan synthase 2</td>
<td valign="top" align="right">&#x02212;5.00</td></tr>
<tr>
<td valign="top" align="left">NM_001753</td>
<td valign="top" align="left">CAV1: caveolin 1, caveolae protein, 22 kDa</td>
<td valign="top" align="right">&#x02212;5.04</td></tr>
<tr>
<td valign="top" align="left">NM_033439</td>
<td valign="top" align="left">IL33: interleukin 33</td>
<td valign="top" align="right">&#x02212;5.96</td></tr></tbody></table>
<table-wrap-foot><fn id="tfn1-ijo-45-02-0782">
<p>FC, fold change.</p></fn></table-wrap-foot></table-wrap>
<table-wrap id="tII-ijo-45-02-0782" position="float">
<label>Table II</label>
<caption>
<p>Gene to GO Biological Process test for over-representation (ANK-199 to control).</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th valign="bottom" align="left">Term</th>
<th valign="bottom" align="center">Count</th>
<th valign="bottom" align="center">&#x00025;</th>
<th valign="bottom" align="center">p-value</th></tr></thead>
<tbody>
<tr>
<td valign="top" align="left">GO:0044087 - regulation of cellular component biogenesis</td>
<td valign="top" align="center">9</td>
<td valign="top" align="center">6.382979</td>
<td valign="top" align="center">8.59E-06</td></tr>
<tr>
<td valign="top" align="left">GO:0030036 - actin cytoskeleton organization</td>
<td valign="top" align="center">10</td>
<td valign="top" align="center">7.092199</td>
<td valign="top" align="center">3.75E-05</td></tr>
<tr>
<td valign="top" align="left">GO:0032956 - regulation of actin cytoskeleton organization</td>
<td valign="top" align="center">7</td>
<td valign="top" align="center">4.964539</td>
<td valign="top" align="center">4.43E-05</td></tr>
<tr>
<td valign="top" align="left">GO:0043254 - regulation of protein complex assembly</td>
<td valign="top" align="center">7</td>
<td valign="top" align="center">4.964539</td>
<td valign="top" align="center">4.72E-05</td></tr>
<tr>
<td valign="top" align="left">GO:0032970 - regulation of actin filament-based process</td>
<td valign="top" align="center">7</td>
<td valign="top" align="center">4.964539</td>
<td valign="top" align="center">5.34E-05</td></tr>
<tr>
<td valign="top" align="left">GO:0051493 - regulation of cytoskeleton organization</td>
<td valign="top" align="center">8</td>
<td valign="top" align="center">5.673759</td>
<td valign="top" align="center">5.75E-05</td></tr>
<tr>
<td valign="top" align="left">GO:0030029 - actin filament-based process</td>
<td valign="top" align="center">10</td>
<td valign="top" align="center">7.092199</td>
<td valign="top" align="center">6.17E-05</td></tr>
<tr>
<td valign="top" align="left">GO:0007010 - cytoskeleton organization</td>
<td valign="top" align="center">13</td>
<td valign="top" align="center">9.219858</td>
<td valign="top" align="center">7.13E-05</td></tr>
<tr>
<td valign="top" align="left">GO:0008064 - regulation of actin polymerization or depolymerization</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">4.255319</td>
<td valign="top" align="center">7.77E-05</td></tr>
<tr>
<td valign="top" align="left">GO:0030832 - regulation of actin filament length</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">4.255319</td>
<td valign="top" align="center">9.07E-05</td></tr></tbody></table></table-wrap>
<table-wrap id="tIII-ijo-45-02-0782" position="float">
<label>Table III</label>
<caption>
<p>Gene to GO Molecular Function test for over-representation (ANK-199 to control).</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th valign="bottom" align="left">Term</th>
<th valign="bottom" align="center">Count</th>
<th valign="bottom" align="center">&#x00025;</th>
<th valign="bottom" align="center">p-value</th></tr></thead>
<tbody>
<tr>
<td valign="top" align="left">GO:0003723 - RNA binding</td>
<td valign="top" align="center">21</td>
<td valign="top" align="center">14.89362</td>
<td valign="top" align="left">1.54E-07</td></tr>
<tr>
<td valign="top" align="left">GO:0000166 - nucleotide binding</td>
<td valign="top" align="center">33</td>
<td valign="top" align="center">23.40426</td>
<td valign="top" align="left">6.28E-05</td></tr>
<tr>
<td valign="top" align="left">GO:0008092 - cytoskeletal protein binding</td>
<td valign="top" align="center">11</td>
<td valign="top" align="center">7.801418</td>
<td valign="top" align="left">0.00346</td></tr>
<tr>
<td valign="top" align="left">GO:0032553 - ribonucleotide binding</td>
<td valign="top" align="center">24</td>
<td valign="top" align="center">17.02128</td>
<td valign="top" align="left">0.005183</td></tr>
<tr>
<td valign="top" align="left">GO:0032555 - purine ribonucleotide binding</td>
<td valign="top" align="center">24</td>
<td valign="top" align="center">17.02128</td>
<td valign="top" align="left">0.005183</td></tr>
<tr>
<td valign="top" align="left">GO:0017076 - purine nucleotide binding</td>
<td valign="top" align="center">24</td>
<td valign="top" align="center">17.02128</td>
<td valign="top" align="left">0.008794</td></tr>
<tr>
<td valign="top" align="left">GO:0003779 - actin binding</td>
<td valign="top" align="center">8</td>
<td valign="top" align="center">5.673759</td>
<td valign="top" align="left">0.009366</td></tr>
<tr>
<td valign="top" align="left">GO:0019900 - kinase binding</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">4.255319</td>
<td valign="top" align="left">0.009636</td></tr>
<tr>
<td valign="top" align="left">GO:0047485 - protein N-terminus binding</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">2.836879</td>
<td valign="top" align="left">0.016454</td></tr>
<tr>
<td valign="top" align="left">GO:0003924 - GTPase activity</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">4.255319</td>
<td valign="top" align="left">0.018492</td></tr></tbody></table></table-wrap></floats-group></article>
