All reagents were purchased from Sigma-Aldrich, unless otherwise specified. The inhibitor of FAD-dependent SMOX activity, N,N'-Bis(2,3-butadienyl)-1,4-butanediamine dihydrochloride (MDL-72527, herein referred to as MDL), was a gift from Hoechst Marion Roussel Inc. Plastic-wares were purchased from Nunc (Nunc A/S). The transfections and growth conditions of the parental N18TG2 murine NB cell line (Sigma-Aldrich), pcDNA3-transfected (NP), pcDNA3-SMOX-transfected (NS) and pcDNA3-γSMO-transfected (NG) cell lines were as previously described in the study by Cervelli et al (26), Amendola et al (18) and Bianchi et al (19). The γSMO isoform is a splicing variant of SMOX lacking the FAD domain (26). The cells were pre-treated with MDL at a final concentration of 50 µM for 24 h. For ROS counteraction, the cells were pre-treated with N-acetyl-cysteine (NAC) at a final concentration of 10 mM of 24 h. The control cells were cells treated in the absence of MDL and NAC.

A total of 9 syngeneic (SG) male mice and 9 Total-SMOX transgenic (TG) male mice (3 months old, with a mean body weight of 30 g), were used as the experimental subjects. In the experiments, only male mice were used in order to exclude all biochemical and behavioural changes due to female cycle hormones. They were born and raised at the ‘Stazione per la Tecnologia Animale' at the University of Tor Vergata and they were transferred to the animal house of the University of Roma Tre for the experiments. The animals were housed in an environment with a controlled temperature (20±1°C), humidity (55±10%) and a 12-h light/dark cycle. The housing conditions were in accordance with standard laboratory settings including cage enrichment with free access to food and water.

Transgenic GFP-SMOX (former JoSMOX) mice described in the study by Cervelli et al (27) were crossed with Total-CRE mice to obtain the Total-SMOX genetic line described in the study by Ceci et al (20). In order to stabilize the Total-SMOX transgenic line, mice were further genetically stabilised back-crossing 10 times with C57BL/6 mice (20). The genotyping for the Total-SMOX mice was carried out using the β-gal staining of the tail biopsies from the mouse pups and confirmed by PCR methods according to Ceci et al (20). In the experiments, as control mice, the syngeneic littermates were used. All experiments were performed on independent groups of mice. The organs (brain, intestine and heart) were obtained from sacrificed SG and TG mice by cervical dislocation. The experiments were carried out in accordance with the ethical guidelines for the conduct of animal research of the European Community's Council Directive 77/499/EEC e 81/309/EEC. Formal approval of these experiments was obtained from the Italian Ministry of Health (Official Italian Regulation D.L.vo 26/2014, ‘Authorization from Ministero della Salute no. 964/2015-PR'). All experiments were performed on independent groups of mice. All efforts were made to minimize the number of animals used and their suffering.

Total RNA from the NG, NP, NS cell lines, and from the SG and TG mouse brains, intestines and hearts was isolated using the GeneElute system, and reverse transcribed into cDNA using the SuperScript First-Strand Synthesis System (Invitrogen; Thermo Fisher Scientific), according to the manufacturer's instructions. For quantitative PCR (qPCR), cDNA was amplified by SYBR Premix Ex Taq (Takara Bio Inc.) according to the manufacturer's instructions. Specific primers pairs were designed using Primer Express Software (Applied Biosystems). The thermo-cycling conditions were as follows: 95°/30 sec, followed by 40 cycles of [95°/5 sec; 60-63° (according to Table SI)/30 sec].

Three experimental replicates were performed, and the results were analysed using the relative expression software tool (REST) (28). The sequence and position of the specific primers for AATF, BAK, BAX and PUMA are listed in Table SI. The sequence and position of the specific primers for SMOX, β-actin and RPS7 as the housekeeping reference genes have been described elsewhere (18,19,27). For semi-quantitative RT-PCR, the Takara PCR Amplification kit was used (Takara Bio Inc.). The thermocycling conditions were as follows: 94°/4 min, followed by 30 cycles of [94°/1 min; 60-63° (according to Table SI)/30 sec; 72°/30 sec] and then 72°/7 min. The amplified products were run on a 1.5% agarose gel. Gel images using ethidium bromide were obtained with automatic exposure by Diana III dedicated device (Raytest Italia).

The levels of intracellular hydrogen peroxide were determined by flow cytometric (FCM) analysis of the fluorescence intensity of 2′,7′-dichlorodihydrofluorescein diacetate (H2DCFDA) (Invitrogen; Thermo Fisher Scientific). Briefly, the cells were treated with H2DCFDA for 30 min with/without pre-treatment for 24 h with 10 mM NAC. At least 2×10⁴ cells were analyzed by a FACSCalibur flow cytometer (BD Biosciences), with laser excitation set at 495 and a 525 nm emission filter to detect green fluorescence. Oxidative stress, on the basis of number of 8-oxo-dG residues (29), was analysed using the OxyDNA kit, following the manufacturer's instructions (Merck KGaA). Negative control was obtained by omitting the fluorescence probe-mix from the reaction. The levels of γH2AX accumulation were determined by FCM analysis of the green fluorescence intensity, only inside the G1 sub-cohort of cells evidenced by DNA red fluorescence using 1 µg/ml of propidium iodide (PI), with laser excitation set at 488 and 630 nm band pass emission filter to detect both red and green fluorescence (30). The cells were stained with a primary γH2AX, rabbit polyclonal antibody (4418-APC-020; Trevigen) at a dilution of 1:100, overnight a 4°C, and then with a secondary monoclonal anti-rabbit FITC-conjugated antibody (sc-2359; Santa Cruz Biotechnology) at a dilution of 1:200, for 2 h at room temperature. The level of 3′-terminal deoxy-transferase (TdT) by the TUNEL method was used to detect apoptosis, following the manufacturer's instructions (in situ Cell Death Fluorescent kit; Roche Diagnostic S.p.A.) and was performed as previously described (31). AATF was detected and quantified by both semi-quantitative RT-PCR (see above) and western blot analysis. Protein extraction and western blot analysis were carried out as previously described by Ceci et al (20). The Briefly, tissues were homogenized in 5 vol (w/v) of ice-cold lysis buffer (50 mM Tris-HCl pH 7.5, 10% glycerol, 320 mM sucrose, 1% Triton, 1 mM PMSF, 1X complete protease inhibitor cocktail) using a Potter Elvehjem Tissue Homogenizer for 45 sec. The samples were kept on ice for 30 min and then centrifuged at 16,100 × g for 15 min at 4°C. The supernatant was collected and protein determination was carried out as previously described by Ceci et al (20). Primary rabbit polyclonal antibody developed against AATF (dilution 1:1,000, not commercially available; provided by Professor Fanciulli, Università degli Studi di Milano-Bicocca) (22) was used for western blot analysis (incubated overnight at 4°C). Equal proteins amounts (20 µg/sample) were loaded on electrophoresis in a 10% poly-acrylamide gel and transferred onto nitrocellulose membranes. The membranes were blocked with 5% non-fat dry milk for 1 h and incubated overnight at 4°C with a polyclonal anti-β-actin (dilution 1:2,000, cat. no. A5060; Sigma-Aldrich S.r.l) diluted in 2.5% non-fat dry milk. β-actin was taken as the reference. Secondary peroxidase-labelled anti-rabbit IgG antibody (dilution 1:5,000, cat. no. SA00001-2, in 1.25% non-fat dry milk) was from Proteintech. The secondary antibody was incubated for 1 h at room temperature. Detection was performed using ECL Western blotting detection reagents (GE Healthcare). Densitometric measurements were obtained using ImageJ 1.52a software (Wayne Rasband National Institutes of Health).

PA oxidases [SMOX and the peroxisomal FAD-dependent enzyme N¹-acetyltransferase oxidase (PAOX)] activity was assayed as previously described (19,32,33). Ornithine decarboxylase (ODC) and spermidine/spermine N¹-acetyltransferase (SSAT) activities were determined using ¹⁴C-labelled substrate and scintillation counting of end metabolized products, as described elsewhere (18,19). Cell pellets were sonicated on ice and frozen in aliquots. The protein concentration was determined using the Bradford method and at least 3 determination replicas were carried out for the enzymatic activity of SMOX, PAOX, ODC and SSAT.

Significant differences at P<0.05 were evaluated by one-way ANOVA, followed by the multiple comparison Tukey post-hoc test (SPSS-11 statistical dedicated software; SPSS Inc.). All experiments were repeated 3 times unless otherwise indicated.

In previous studies, SMOX activity has been described to induce a chronic sub-lethal DNA damage, with a 3-fold increase in 8-oxo-dG residues, but with no increase in cell mortality being observed (18,19,31). Treatments with inhibitors of PA oxidases have been shown to abolish the higher amount of oxidative stress in different cell line models (34,35). Similar results were obtained in the present study, since treatment with NAC was able to counteract ROS overproduction (36). ROS (Fig. 1A, left panel) and 8-oxo-dG (Fig. 1B, left panel) were induced by SMOX in the NS cells, as shown by the FCM histograms of H2DCFDA and 8-oxo-dG residues, when compared with both NP and NG cells. A final concentration of 10 mM NAC treatment scavenged ROS overproduction (Fig. 1A, right panel) and hampered 8-oxo-dG residues (Fig. 1B, right panel) in NS cells. The γH2AX phosphorylated content was also evaluated to monitor the onset of cellular response to DNA damage (Fig. 1C, left panel). SMOX induced γH2AX phosphorylation in the NS cells and NAC subverted this event (Fig. 1C, right panel). These data confirm the ability of SMOX to produce oxidative cellular stress, driving cells to a preliminary phase of repair. Notably, we confirm previous data on NB cells (18,19) and in human colon adenocarcinoma cell (31), whereby SMOX over-expression does not induce cell mortality and apoptosis per se when evaluated by the ipo-G0/G1 sub-population and TUNEL assay, as shown in Fig. S1.

The cellular ROS disequilibrium can drive cells to enter a complex mechanistic molecular pathway to arrest the cell cycle and promote DNA repair or apoptosis. From this point of view, SMOX represents an apparently self-contradictory response, since it has the ability to induce preliminary stress without driving the onset of apoptosis. Thus, we wished to examine the level of the AATF gene (22). Upon genotoxic stress, AATF has been described to become phos-phorylated and to subsequently translocate to the nucleus to bind the PUMA, BAX and BAK promoter regions (23). PUMA, BAX and BAK are well known pro-apoptotic genes driven by p53, and NB cells are almost exclusively p53-proficient (23).

AATF mRNA expression was evaluated by semi-quantitative RT-PCR in the NP, NG and NS cells, under normal growth conditions and following treatment with NAC (Fig. 2A). At 25 cycles, AATF mRNA expression was higher in the NS cells. With the increasing PCR cycles, amplification rises to saturate the signals. The exhaustive ROS deprivation due to treatment with 10 mM NAC (Fig. 2A), enforced AATF expression in all the cell lines. AATF protein accumulation detected by western blot analysis was in full accordance with the RNA expression data (Fig. 2B, left panel), while NAC treatment induced the over-accumulation of AATF protein in all cell lines (Fig. 2B, right panel). As a first step, a semi-quantitative RT-PCR indicated the diminished amount of mRNA for the pro-apoptotic genes, BAK, BAX and PUMA, in the NS cells (Fig. S2A). MDL treatment induced an equal expression of these pro-apoptotic genes in the NP, NG and NS cell lines (Fig. S2A). The expression levels of BAK, BAX and PUMA were then quantified by qPCR, as a ratio with the RPS7 housekeeping reference gene, without analysing the NAC-treated cells, since they exhibited an equal amount of AATF gene transcripts. The results of qPCR confirmed the lower mRNA expression levels of BAK, BAX and PUMA in the NS vs. the NP and NG cell lines, and the normalization effect due to MDL (Fig. 3A). Subsequently, we analysed these effects of SMOX overexpres-sion in tissues from the genetic-engineered conditional mouse model, Total-SMOX (20). When comparing the level of AATF in different organs between the transgenic and syngeneic animals, we observed a higher level of this anti-apoptotic factor in the intestinal tract and heart tissues than in the brain, according to SMOX expression in these organs (Fig. 3B). Consistent with the results obtained in vitro, the AATF levels were associated with SMOX overexpression, as demonstrated by semi-quantitative RT-PCR (Fig. S2B) and quantified by qPCR (Fig. 3B), where the expression of genes are reported as ratio between syngeneic vs. transgenic mice. AATF activation was associated with the transcriptional inhibition of BAK, BAX and PUMA, thus representing indirect evidence in vivo of the anti-apoptotic activity of SMOX. Taken together, these results strongly indicate that SMOX may act as an indirect inhibitor of apoptosis, via an imbalance in ROS generation, and may be considered a tumorigenic gene.

We also found that PA metabolism in the NS cells was consistent with what was expected (19,37). Namely, a low ODC activity corresponds to a higher SSAT activity and to a 3- or 4-fold enhancement in SMOX activity (19,31) (Fig. 4A). The intracellular PA concentrations followed the enzymatic variation consistently, with less putrescine (PUT) and more SPD, mainly due to SMOX overactivity, although the amount of SPM was consistently buffered by the interconversion of the PA metabolism (Fig. 4B, whisker box-plot). Of note, NAC induced an increase in the level of intracellular SPD in both NP and NS cell lines.