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<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">Molecular Medicine Reports</journal-id>
<journal-title-group>
<journal-title>Molecular Medicine Reports</journal-title>
</journal-title-group>
<issn pub-type="ppub">1791-2997</issn>
<issn pub-type="epub">1791-3004</issn>
<publisher>
<publisher-name>D.A. Spandidos</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3892/mmr.2017.7287</article-id>
<article-id pub-id-type="publisher-id">mmr-16-04-5165</article-id>
<article-categories>
<subj-group>
<subject>Articles</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>The effect of Bu Zhong Yi Qi decoction on simulated weightlessness-induced muscle atrophy and its mechanisms</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author"><name><surname>Zhu</surname><given-names>Mu</given-names></name>
<xref rid="af1-mmr-16-04-5165" ref-type="aff">1</xref>
<xref rid="af2-mmr-16-04-5165" ref-type="aff">2</xref></contrib>
<contrib contrib-type="author"><name><surname>Liu</surname><given-names>Zhongyang</given-names></name>
<xref rid="af3-mmr-16-04-5165" ref-type="aff">3</xref></contrib>
<contrib contrib-type="author"><name><surname>Gao</surname><given-names>Mingze</given-names></name>
<xref rid="af1-mmr-16-04-5165" ref-type="aff">1</xref></contrib>
<contrib contrib-type="author"><name><surname>Zhang</surname><given-names>Yan</given-names></name>
<xref rid="af1-mmr-16-04-5165" ref-type="aff">1</xref></contrib>
<contrib contrib-type="author"><name><surname>Li</surname><given-names>Yuheng</given-names></name>
<xref rid="af2-mmr-16-04-5165" ref-type="aff">2</xref></contrib>
<contrib contrib-type="author"><name><surname>Ling</surname><given-names>Shukuan</given-names></name>
<xref rid="af2-mmr-16-04-5165" ref-type="aff">2</xref></contrib>
<contrib contrib-type="author"><name><surname>Zhang</surname><given-names>Pengfei</given-names></name>
<xref rid="af2-mmr-16-04-5165" ref-type="aff">2</xref></contrib>
<contrib contrib-type="author"><name><surname>Zhao</surname><given-names>Chenyang</given-names></name>
<xref rid="af2-mmr-16-04-5165" ref-type="aff">2</xref></contrib>
<contrib contrib-type="author"><name><surname>Jiang</surname><given-names>Lijun</given-names></name>
<xref rid="af2-mmr-16-04-5165" ref-type="aff">2</xref></contrib>
<contrib contrib-type="author"><name><surname>Liu</surname><given-names>Yu</given-names></name>
<xref rid="af2-mmr-16-04-5165" ref-type="aff">2</xref></contrib>
<contrib contrib-type="author"><name><surname>Li</surname><given-names>Qi</given-names></name>
<xref rid="af2-mmr-16-04-5165" ref-type="aff">2</xref></contrib>
<contrib contrib-type="author"><name><surname>Li</surname><given-names>Dong</given-names></name>
<xref rid="af3-mmr-16-04-5165" ref-type="aff">3</xref></contrib>
<contrib contrib-type="author"><name><surname>Hu</surname><given-names>Sumin</given-names></name>
<xref rid="af1-mmr-16-04-5165" ref-type="aff">1</xref>
<xref rid="c2-mmr-16-04-5165" ref-type="corresp"/></contrib>
<contrib contrib-type="author"><name><surname>Li</surname><given-names>Yingxian</given-names></name>
<xref rid="af2-mmr-16-04-5165" ref-type="aff">2</xref>
<xref rid="c1-mmr-16-04-5165" ref-type="corresp"/></contrib>
</contrib-group>
<aff id="af1-mmr-16-04-5165"><label>1</label>Department of Chinese Materia Medica, School of Preclinical Medicine, Beijing University of Chinese Medicine, Beijing 100019, P.R. China</aff>
<aff id="af2-mmr-16-04-5165"><label>2</label>State Key Laboratory of Space Medicine Fundamentals and Applications, China Astronaut Research and Training Center, Beijing 100094, P.R. China</aff>
<aff id="af3-mmr-16-04-5165"><label>3</label>State Key Laboratory of Proteomics, Beijing Proteome Research Center, Institute of Radiation Medicine, Beijing 102206, P.R. China</aff>
<author-notes>
<corresp id="c1-mmr-16-04-5165"><italic>Correspondence to</italic>: Professor Yingxian Li, State Key Laboratory of Space Medicine Fundamentals and Applications, China Astronaut Research and Training Center, 26 Beiqing Road, Beijing 100094, P.R. China, E-mail: <email>yingxianli@aliyun.com</email></corresp>
<corresp id="c2-mmr-16-04-5165">Professor Sumin Hu, Department of Chinese Materia Medica, School of Preclinical Medicine, Beijing University of Chinese Medicine, 11 3rd Northeast Ring Road, Beijing 100019, P.R. China, E-mail: <email>husm@bucm.edu.cn</email></corresp>
</author-notes>
<pub-date pub-type="ppub"><month>10</month><year>2017</year></pub-date>
<pub-date pub-type="epub"><day>18</day><month>08</month><year>2017</year></pub-date>
<volume>16</volume>
<issue>4</issue>
<fpage>5165</fpage>
<lpage>5174</lpage>
<history>
<date date-type="received"><day>10</day><month>08</month><year>2016</year></date>
<date date-type="accepted"><day>11</day><month>05</month><year>2017</year></date>
</history>
<permissions>
<copyright-statement>Copyright: &#x00A9; Zhu et al.</copyright-statement>
<copyright-year>2017</copyright-year>
<license license-type="open-access">
<license-p>This is an open access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by-nc-nd/4.0/">Creative Commons Attribution-NonCommercial-NoDerivs License</ext-link>, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.</license-p></license>
</permissions>
<abstract>
<p>Microgravity has been previously demonstrated to induce skeletal muscle atrophy, loss of muscle force and disorders in myogenesis and metabolism. Current pharmacological strategies exhibit poor efficacy. Bu Zhong Yi Qi decoction (BZ) is a well-known traditional Chinese medicine decoction used for myasthenia gravis. In the present study, its effect on unloading induced muscle atrophy was investigated. The mousetail suspension model was used to simulate weightlessness induced muscle atrophy. The results indicated that BZ could significantly protect muscles from simulated weightlessness-induced atrophy. To elucidate the underlying mechanisms, drugCIPHER-CS methods were introduced to predict its potential targets, significantly enriched pathways and biological processes. The results demonstrated that the calcium signaling pathway, citrate cycle, biosynthetic and lipid metabolic process are affected by BZ. Among the targets, nuclear receptor corepressor 1 (NCoR1) is one of the most important proteins involved in myogenesis and metabolism. The results indicated that BZ significantly downregulated NCoR 1 expression, and further induced muscle differentiation and metabolism by regulating NCoR1-associated gene expression <italic>in vivo</italic> and <italic>in vitro</italic>. In summary, the present study indicated that may be effective in combating weightlessness-induced muscle atrophy. Combined with bioinformatics, the underlying mechanism for this decoction was investigated, which provided an improved understanding of this decoction.</p>
</abstract>
<kwd-group>
<kwd>traditional Chinese medicine</kwd>
<kwd>protective effects</kwd>
<kwd>simulated weightlessness-induced muscle atrophy</kwd>
<kwd>network pharmacology</kwd>
</kwd-group>
</article-meta>
</front>
<body>
<sec sec-type="intro">
<title>Introduction</title>
<p>Prolonged space flight can cause rapid and severe atrophy in skeletal muscle due to the weightlessness experienced. It has been demonstrated that real and simulated spaceflight results in a loss of muscle mass and reductions in muscle strength and endurance in humans and rodents (<xref rid="b1-mmr-16-04-5165" ref-type="bibr">1</xref>&#x2013;<xref rid="b4-mmr-16-04-5165" ref-type="bibr">4</xref>). Satellite cells are skeletal muscular stem cells that are the primary source for muscle regeneration. Satellite cell dysfunction, representing impaired proliferation capacity or increased apoptosis, is suggested to contribute to the decreasing muscle regeneration in atrophy (<xref rid="b5-mmr-16-04-5165" ref-type="bibr">5</xref>,<xref rid="b6-mmr-16-04-5165" ref-type="bibr">6</xref>). Oxidative stress can be one of the triggers of muscle atrophy (<xref rid="b7-mmr-16-04-5165" ref-type="bibr">7</xref>), while alterations of mitochondrial biogenesis and dynamics have been observed in prolonged unloading of muscle (<xref rid="b8-mmr-16-04-5165" ref-type="bibr">8</xref>,<xref rid="b9-mmr-16-04-5165" ref-type="bibr">9</xref>). Countermeasures against these causes may be a possible resolution for weightlessness-induced muscle atrophy. Effective prevention of weightlessness-induced muscle atrophy required for space missions of increasing durations. Chinese medicine has been used previously in countermeasures for muscle-associated diseases. In traditional Chinese medicine (TCM), it is believed that the spleen governs the muscle, and is closely associated with <italic>qi</italic> (<xref rid="b10-mmr-16-04-5165" ref-type="bibr">10</xref>). In TCM it is thought that in space, as the earth <italic>qi</italic> is reduced, the spleen is relatively weak. Bu Zhong Yi Qi decoction (BZ) predominantly consists of Radix Ginseng, Radix Angelicae and has been reported to improve spleen function and is used in treatment of myasthenia gravis (<xref rid="b11-mmr-16-04-5165" ref-type="bibr">11</xref>). In the present study, the effects of BZ on weightlessness-induced muscle atrophy and its mechanisms were investigated. BZ is additionally commonly used in clinical practice for chronic fatigue and chronic atrophic gastritis, and is widely produced (<xref rid="b12-mmr-16-04-5165" ref-type="bibr">12</xref>). Large scale epidemiological studies in clinical trials have been conducted, suggesting that BZ has a clear effect on improving muscle function (<xref rid="b11-mmr-16-04-5165" ref-type="bibr">11</xref>). In addition, investigations have been conducted into the bioactivities of monomers present in BZ. Hexadecanoic acid from BZ was reported to induce bone marrow mesenchymal stem cell proliferation depending on the retinoic acid receptor pathway and upregulated the mRNA levels of insulin-like growth factor-1 (<xref rid="b13-mmr-16-04-5165" ref-type="bibr">13</xref>). However, individual pharmacological effects of the monomers present do not fully account for the effects of this formula in general, and the pharmacology of BZ remains unclear. Bioinformatic methods provide predictions of drug-target interactions, identifying underlying molecular mechanisms. The drugCIPHER-CS method, which was developed by Zhao and Li (<xref rid="b14-mmr-16-04-5165" ref-type="bibr">14</xref>), offers an effective method to understand the complicated multitargeted mechanisms of TCM herbal formulas. The two basic principles of this method are that drugs with similar chemical structures are likely to bind functional-associated proteins, and functional associations between the proteins can be measured by their distance in the protein interaction network (<xref rid="b15-mmr-16-04-5165" ref-type="bibr">15</xref>). It has been demonstrated as a reliable method to obtain potential targets for decoctions (<xref rid="b16-mmr-16-04-5165" ref-type="bibr">16</xref>). In addition, it is possible to analyze the significantly enriched pathways using Kyoto Encyclopedia of Genes and Genomes (KEGG) biological pathway analysis and Gene Ontology (GO) analysis to identify the biological processes involved in these targets. In the present study, it was identified that BZ was able to protect from simulated weightlessness-induced loss of muscle mass, with a reduction in the gastrocnemius (GAS) cross sectional area and a decrease in twitch force. The results of the bioinformatics analysis identified the main biological pathways and processes involved the effect of BZ. Experimental verification is required in order to further reveal the underlying mechanisms.</p>
</sec>
<sec sec-type="materials|methods">
<title>Materials and methods</title>
<sec>
<title/>
<sec>
<title>Animal studies</title>
<p>Male Kunming (KM) mice (n=24; age, 8 weeks old; weight, ~25 g; Beijing Vital River Laboratory Animal Technology Co, Ltd., Beijing, China) were divided into control (Ctrl), hindlimb-suspended (HS) and BZ-fed-hindlimb-suspended (BZ) groups (n=8 mice/group). All mice were maintained in a temperature (23&#x00B0;C) and humidity (50&#x2013;70&#x0025;)-controlled specific pathogen free (SPF) animal facility with a 12 h light/dark cycle and were given free access to food and water. HS and BZ mice were suspended by attaching a harness to the proximal end of the tail. The hindlimb suspension model was adopted to simulate unloading-induced muscle atrophy, as previously described (<xref rid="b17-mmr-16-04-5165" ref-type="bibr">17</xref>). The mice were suspended at a 30&#x00B0; angle to the floor to prevent contact with any supportive surfaces, with only the forelimbs maintained in contact with the grid floor, which allowed the mice to move and access food and water freely. HS and BZ mice were suspended for 14 days. BZ mice were fed with BZ during this period and 7 days previously, while HS and Ctrl mice were fed with water. No necrosis of hindlimb or unexpected death of animals was observed during the experimental procedure. At the end of suspension, mice were euthanized for muscle isolation by intraperitoneal injection with 1.5&#x0025; pentobarbital sodium (Sigma-Aldrich; Merck Millipore, Darmstadt, Germany). The experimental procedures were approved by the Animal Care and Use Committee of China Astronaut Research and Training Center (Beijing, China), and all animal studies were performed according to the approved guidelines for the care and use of live animals.</p>
</sec>
<sec>
<title>Drug preparation and dose consideration</title>
<p>According to its origin, <italic>Treatise on the Spleen and Stomach</italic> (<xref rid="b18-mmr-16-04-5165" ref-type="bibr">18</xref>), the BZ consists of eight Chinese herbs, at a ratio of 5:5:3:5:2:4:2:3, as follows: Radix Astragalus membranaeus (Huangqi); Radix Panax ginseng (Renshen); Radix Angelica Sinensis (Danggui); Glycyrrhiza uralensis (Gancao); Cimicifuga foetida (Shengma); Herba Bupleurumchinense (Chaihu); Citrus sinensis Osbeck (Chenpi); and Atractylodes macrocephala (Baizhu), respectively. Herbs were purchased from Tongren Tang Pharmacy (Beijing, China). These 8 types of herbs, at a total weight of 89 g, were extracted twice in 890 ml boiling water for 1 h. A liquor solution was formed after extraction. The liquid was then concentrated to obtain a paste, which was collected and water was added to a total volume of 100 ml, so that the liquid contained 0.89 g herbal medicine/ml. A brown medical liquor was finally obtained with pH of 7.4. Based on the recommended human daily dosage of 89 g/day, according to the equivalent conversion between humans and mice by body weight, a dosage of 5.93 mg/g was used in the current study.</p>
</sec>
<sec>
<title>Drug-containing serum preparation</title>
<p>BZ was fed to male Wistar rats for 5 days (n=5; weight, 293&#x2013;301 g; supplied by Beijing Vital River Laboratory Animal Technology Co., Ltd.). Rats were maintained in a temperature (23&#x00B0;C) and humidity (50&#x2013;70&#x0025;)-controlled SPF animal facility with a 12 h light/dark cycle and were given free access to food and water. The dosage of BZ used was 11.87 mg/g, which was twice the dosage for the mice during tail-suspension period as previously described. Serum was taken on the fifth day 2 h after the rats were fed with BZ.</p>
</sec>
<sec>
<title>Ex vivo assessment of skeletal muscle contractile properties</title>
<p>Following 14 days of hindlimb suspension, the GAS was isolated from distal tendons intact and nylon sutures were attached to the tendons. The other end of the string was attached to the MedLabBio-Signal Processing System (MedLab-U/4C501H; Nanjing Medease Science and Technology Co., Ltd, Nanjing, China; <uri xlink:href="http://www.medease.com.cn">http://www.medease.com.cn</uri>). Muscles were adjusted perpendicularly to the operation table to obtain the maximal twitch force and bathed with PBS solution to remain wet. <italic>Ex vivo</italic> muscle stimulation and data analysis was performed using the Medlab system. Peak isometric twitch force was analyzed from isometric contraction, and isometric twitch contractions were stimulated in muscles at a frequency of every 50 Hz, with the stimulation current varying from 0 to 10 V.</p>
</sec>
<sec>
<title>Histological analysis</title>
<p>Cryosections of GAS were fixed in 4&#x0025; paraformaldehyde in PBS for 10 min at 4&#x00B0;C and washed in PBS. After fixing of the samples with 15&#x0025; goat serum (Sigma-Aldrich; Merck KGaA) at room temperature, the sections were incubated overnight at 4&#x00B0;C with mouse monoclonal anti-laminin primary antibodies (CWP223;1:50; Beijing Kangwei Century Biotechnology Co., Ltd., Beijing, China). The primary antibody was detected by incubation at room temperature for 1 h with fluorescein-conjugated affinipure goat anti-mouse immunoglobulin G (TA130003; 1:200; OriGene Technologies, Inc., Rockville, MD, USA.) diluted in BSA. Three independent GAS cryosections and 8 fibers per section were counted for cross-sectional area (CSA) analysis.</p>
</sec>
<sec>
<title>Reverse transcription-quantitative polymerase chain reaction (RT-qPCR)</title>
<p>Total RNA was extracted from GAS muscles using TRIzol reagent (Invitrogen; Thermo Fisher Scientific, Inc., Waltham, MA, USA) following the manufacturer&#x0027;s instructions. A total of 3 &#x00B5;g RNA was reverse-transcribed using the PrimeScript RT reagent kit (Perfect Real Time) with gDNA Eraser (Takara Bio, Inc., Otsu, Japan). Gene expression was assessed using qPCR with SYBR Premix Ex Taq II (TliRNaseH Plus; Takara Bio., Inc.) according to the manufacturer&#x0027;s protocol. qPCR values were normalized with U6 and the primers used are listed in <xref rid="tI-mmr-16-04-5165" ref-type="table">Table I</xref>. The following thermal settings were used: 95&#x00B0;C for 30 sec followed by 40 cycles of 95&#x00B0;C for 5 sec and 60&#x00B0;C for 30 sec. Relative expression values were calculated using the comparative threshold cycle (&#x0394;&#x0394;Cq) method in accordance with previous guidelines (<xref rid="b19-mmr-16-04-5165" ref-type="bibr">19</xref>,<xref rid="b20-mmr-16-04-5165" ref-type="bibr">20</xref>).</p>
</sec>
<sec>
<title>Cell culture</title>
<p>C2C12 myoblasts were obtained from ATCC (Manassas, VA, USA) and were cultured in Dulbecco&#x0027;s modified Eagle&#x0027;s medium (DMEM) supplemented with 10&#x0025; fetal bovine serum (FBS) and antibiotics (100 U/ml penicillin and 100 &#x00B5;g/ml streptomycin). The cells were differentiated in DMEM containing 2&#x0025; horse serum [M&#x0026;C Gene Technology (Beijing) Ltd., Beijing, China]. To compare the effect of serum from BZ-fed rats, we treated the cells with 2&#x0025; serum from normal rat as a Ctrl.</p>
</sec>
<sec>
<title>Cell proliferation assay</title>
<p>C2C12 myoblasts were seeded into 96-well plates with growth medium for 12 h, then were cultured with differentiation medium (DMEM containing 2&#x0025; horse serum) for 3 days. Cell proliferation was detected subsequent to incubation with 10&#x0025; MTS (BioVision, Inc., Milpitas, CA, USA) for 5&#x2013;6 h under 485 nm UV light. The experiments were repeated three times.</p>
</sec>
<sec>
<title>Drug-target prediction and analyses</title>
<p>Firstly, the composite compounds of BZ were identified from the literature. The drugCIPHER-CS method was applied to predict the potential drug-targets of the composite compounds. drugCIPHER-CS was developed by Zhao and Li (<xref rid="b14-mmr-16-04-5165" ref-type="bibr">14</xref>), and can infer drug-targets in the genome-wide scale and achieves good prediction performance. Given a set of known drug (drug space)-target (target space) interactions, for a query drug and a candidate target-gene, drugCIPHER-CS will measure the likelihood of their interaction based on the correlation between the query drug&#x0027;s structure similarity with the drug space and the candidate gene&#x0027;s functional similarity with the target space. For each query compound, drugCIPHER-CS ranks its potential targets according to the order of the decreasing interaction possibility (<xref rid="b14-mmr-16-04-5165" ref-type="bibr">14</xref>). In the current study, known drug-target interactions were obtained from the DrugBank database (version: May, 2011) (<xref rid="b21-mmr-16-04-5165" ref-type="bibr">21</xref>), the chemical structure similarity is calculated based on compounds&#x0027; MOLPRINT 2D descriptors and Tanimoto coefficient. The human protein interaction network was constructed by integrating the protein interaction data from: Human Protein Reference Database (HPRD; release 9.0, <uri xlink:href="http://www.hprd.org/">http://www.hprd.org/</uri>) (<xref rid="b22-mmr-16-04-5165" ref-type="bibr">22</xref>), the Biological General Repository for Interaction Datasets (BioGRID; version 3.0.66, <uri xlink:href="https://thebiogrid.org/">https://thebiogrid.org/</uri>) (<xref rid="b23-mmr-16-04-5165" ref-type="bibr">23</xref>), the IntAct Molecular Interaction Database (IntAct; version 20100628; <uri xlink:href="http://www.ebi.ac.uk/intact/">http://www.ebi.ac.uk/intact/</uri>) (<xref rid="b24-mmr-16-04-5165" ref-type="bibr">24</xref>), the Molecular INTeraction database (MINT; version 20100505; <uri xlink:href="http://mint.bio.uniroma2.it/">http://mint.bio.uniroma2.it/</uri>) (<xref rid="b25-mmr-16-04-5165" ref-type="bibr">25</xref>), the Database of Interacting Proteins (DIP; version 20100614; <uri xlink:href="http://dip.doe-mbi.ucla.edu">http://dip.doe-mbi.ucla.edu</uri>) (<xref rid="b26-mmr-16-04-5165" ref-type="bibr">26</xref>) and the Protein Data Bank (PDB; <uri xlink:href="http://www.rcsb.org/pdb/home/home.do">http://www.rcsb.org/pdb/home/home.do</uri>) provided by Gibson and Goldberg (<xref rid="b27-mmr-16-04-5165" ref-type="bibr">27</xref>).</p>
<p>After obtaining the potential targets of chemical components of BZ, hypergeometric cumulative distribution test is used to investigate the significantly enriched biological pathways and GO biological processes among these potential targets. A biological pathway or GO biological process was considered to be significantly enriched with drug-targets of BZ when the corresponding upper-tailed P-value of hypergeometric cumulative distribution test was &#x003C;0.05. In the present study, biological pathway data are from KEGG database (<uri xlink:href="http://www.genome.jp/kegg/">http://www.genome.jp/kegg/</uri>; last updated Oct 16, 2012) (<xref rid="b28-mmr-16-04-5165" ref-type="bibr">28</xref>) and GO biological process annotation of human proteins downloaded from GO project website (version Sep 9, 2011; <uri xlink:href="http://www.geneontology.org/">http://www.geneontology.org/</uri>) (<xref rid="b29-mmr-16-04-5165" ref-type="bibr">29</xref>). The network topological analysis of targets is based on the integrated human protein interaction network as mentioned above.</p>
</sec>
<sec>
<title>Statistical analysis</title>
<p>Data are presented as the mean &#x00B1; standard deviation. Statistical significance was determined by the two-tailed t-test using GraphPad Prism 5 (GraphPad Software, Inc., La Jolla, CA, USA). P&#x003C;0.05 was considered to indicate a statistically significant difference.</p>
</sec>
</sec>
</sec>
<sec sec-type="results">
<title>Results</title>
<sec>
<title/>
<sec>
<title>Mice fed with BZ are resistant to simulated microgravity-induced muscle atrophy</title>
<p>To examine the role of BZ in skeletal muscle under HS, BZ was administrated to hindlimb-suspended mice for 14 days. Thereafter, the ratios of soleus (SOL) and GAS muscle weight to the whole-body weight were analyzed in the Ctrl, HS and BZ group mice. Hindlimb suspended mice exhibited over 30 and 12&#x0025; reductions in relative SOL and GAS muscle mass, respectively, in comparison with Ctrl mice. However, hindlimb-suspended mice fed with BZdemonstrated ~20 and 10&#x0025; increase in comparison with HS mice (<xref rid="f1-mmr-16-04-5165" ref-type="fig">Fig. 1A</xref>). This suggested that BZ partly protected hindlimb suspended mice from skeletal muscle atrophy. Immunostaining for laminin of GAS cross sectional area (CSA) delineated a decrease of GAS fiber size in the HS mice in comparison to Ctrl. In contrast, BZ muscle fiber size increased in comparison with HS (<xref rid="f1-mmr-16-04-5165" ref-type="fig">Fig. 1B</xref>). Morphometric analysis of GAS CSA highlighted a significant difference in myofiber size between HS and BZ muscles, confirming that BZ mice were resistant to muscle atrophy (<xref rid="f1-mmr-16-04-5165" ref-type="fig">Fig. 1B</xref>). GAS muscles were dissected and attached for assessment of isometric contractile properties. Representative twitch force traces of the muscles were presented (<xref rid="f1-mmr-16-04-5165" ref-type="fig">Fig. 1C</xref>). Isometric twitch force was significantly increased in the muscles from BZ fed mice compared with their hindlimb suspended counterparts (<xref rid="f1-mmr-16-04-5165" ref-type="fig">Fig. 1C</xref>).</p>
</sec>
<sec>
<title>Target prediction and analyses of the composite compounds of BZ</title>
<p>To elucidate the pharmacological mechanism of BZ, the potential drug-targets of the composite compounds of BZ were predicted and analyzed by bioinformatics analysis. First, by a comprehensive review of the literature, 238 non-redundant composite compounds were identified for 8 herbs of BZ. Subsequently, drugCIPHER-CS method was used to predict the potential targets of these compounds. For a query compound, a score for each candidate target was given by measuring the compound-target interaction possibility. When the top 0.1&#x0025; candidate targets were considered, 451 potential targets of BZ were obtained. Candidate genes were on average targeted by 5.8 compositive compounds.</p>
<p>Furthermore, bioinformatics analysis was conducted for these candidate targets. It was identified that there were 17 significantly enriched KEGG biological pathways among these 451 candidate targets, including calcium signaling pathway and tricarboxylic acid cycle (TCA cycle; <xref rid="tII-mmr-16-04-5165" ref-type="table">Table II</xref>). The calcium signaling pathway is well established in muscle dystrophy, which is activated by ROS to produce Ca<sup>2&#x002B;</sup> entry, resulting in a significant effect of muscle damage (<xref rid="b30-mmr-16-04-5165" ref-type="bibr">30</xref>). TCA cycle flux and adenosine triphosphate (ATP) synthesis rate, TCA cycle and oxidative phosphorylation pathway genes were downregulated in muscle atrophy (<xref rid="b31-mmr-16-04-5165" ref-type="bibr">31</xref>&#x2013;<xref rid="b34-mmr-16-04-5165" ref-type="bibr">34</xref>).</p>
<p>In addition, GO biological process enrichment analysis was conducted and this indicated that candidate targets were significantly enriched in biological processes including biosynthetic process, cellular nitrogen compound metabolic process, lipid metabolic process, cellular amino acid metabolic process and response to stress (<xref rid="tIII-mmr-16-04-5165" ref-type="table">Table III</xref>). Protein and amino acid metabolism is well known to be disrupted during muscle atrophy (<xref rid="b35-mmr-16-04-5165" ref-type="bibr">35</xref>). In addition, fatty acid metabolism and lipid oxidation has been identified to be impaired in the majority of muscle disorders (<xref rid="b36-mmr-16-04-5165" ref-type="bibr">36</xref>&#x2013;<xref rid="b38-mmr-16-04-5165" ref-type="bibr">38</xref>). The significantly enriched biological pathways and processes are potential target pathways and proteins of BZ, providing important evidence for elucidating the molecular mechanism of BZ.</p>
<p>To further determine the key candidate targets of BZ, the topological property of these candidate targets was assessed in the protein interaction network. The degree of a protein was referred to as its number of interaction partners in the protein interaction network, which could reflect the biological importance of a protein. The higher the degree of a protein was, the higher its biological importance. The degree was used to rank the candidate targets, proteins with relatively high degrees included splicing factor 3a subunit 1 (SF3A1), COP9 signalosome subunit 5 (COPS5) and other targets (<xref rid="tIV-mmr-16-04-5165" ref-type="table">Table IV</xref>). SF3A1, necessary for the <italic>in vitro</italic> conversion of 15S U2 snRNP into an active 17S particle that performs pre-mRNA splicing (<xref rid="b39-mmr-16-04-5165" ref-type="bibr">39</xref>), has been demonstrated to have stability in relative quantity in skeletal muscle (<xref rid="b40-mmr-16-04-5165" ref-type="bibr">40</xref>). Genome wide association studies indicated that COPS5 interacted with key regulators of beef cattle carcass intermuscular fat (<xref rid="b41-mmr-16-04-5165" ref-type="bibr">41</xref>). These proteins may serve key roles in muscle physiology and BZ-induced protection. Among the targets predicted, NCoR1 was identified to have a high degree and betweeness centrality in the protein interaction network (<xref rid="tIV-mmr-16-04-5165" ref-type="table">Table IV</xref>), and is a well-known gene closely associated with muscle growth and oxidative function.</p>
</sec>
<sec>
<title>BZ reduces NCoR1 expression levels and promotes myogenesis under simulated weightlessness-induced muscle atrophy</title>
<p>To establish whether NCoR1 is a target for BZ to counteract muscle atrophy, the transcription levels of NCoR1 were detected in hindlimb-suspended and BZ-fed mice in GAS by RT-qPCR analysis. As presented in the results, NCoR1 expression was increased in the muscles of HS mice, and was markedly downregulated upon BZ administration (<xref rid="f2-mmr-16-04-5165" ref-type="fig">Fig. 2A</xref>), confirming that BZ may inhibit the upregulation of NCoR1 expression in muscles under conditions of simulated microgravity.</p>
<p>As reported previously, the expression of Mef2c and Mef2d negatively correlated with NCoR1 expression. These are the key transcription factors involved in the expression of muscle remodeling genes (<xref rid="b42-mmr-16-04-5165" ref-type="bibr">42</xref>&#x2013;<xref rid="b44-mmr-16-04-5165" ref-type="bibr">44</xref>). The mRNA levels were reduced in HS mice compared with that of the Ctrl mice. Following BZ treatment, the expression levels of Mef2c were markedly increased. In line with this, mRNA levels of two MEF2 targets, Mb and Mck, which were two markers of myogenesis, were upregulated in GAS subsequent to administration with BZ (<xref rid="f2-mmr-16-04-5165" ref-type="fig">Fig. 2B</xref>). These results further confirmed that could stimulate myogenesis, and NCoR1 mediated the effect of BZ on muscle atrophy.</p>
<p>Muscle differentiation has been previously reported to be impaired during hindlimb suspension-induced muscle atrophy (<xref rid="b45-mmr-16-04-5165" ref-type="bibr">45</xref>). Pax 7, myogenin and myosin heavy chain (MyHC) are markers of muscle proliferation and differentiation. The expression levels of Pax 7 and myogenin were reduced in HS mice. By contrast, BZ-fed mice displayed a marked increase in the mRNA expression of Pax 7, myogenin and MyHC. Pax 7 and myogenin expression increased 3-fold and MyHC increased by &#x003E;44 fold compared with that of HS mice (<xref rid="f2-mmr-16-04-5165" ref-type="fig">Fig. 2C</xref>), indicating that BZ-fed mice were resistant to muscle atrophy by enhancing muscle differentiation and growth.</p>
</sec>
<sec>
<title>BZ reduces NCoR1 levels and promotes myogenesis and oxidative function in vitro</title>
<p>To further confirm the regulation of BZ on myogenesis and its mechanism, the effect of serum from BZ-fed rats on myoblasts was investigated. Subsequent to incubation of the C2C12 myoblasts in medium with serum containing BZ, the expression of NCoR1 was significantly reduced in comparison with the cells incubated with the serum from rats that did not receive BZ (<xref rid="f3-mmr-16-04-5165" ref-type="fig">Fig. 3A</xref>). Subsequently, the effect of BZ on the proliferation and differentiation of C2C12 cells <italic>in vitro</italic> was investigated. Following treatment of C2C12 cells with the medium containing serum from the rats fed with BZ, the cell numbers were markedly higher than those without BZ treatment (<xref rid="f3-mmr-16-04-5165" ref-type="fig">Fig. 3B</xref>). The expression levels of muscle differentiation marker genes were also upregulated following incubation in BZ serum (<xref rid="f3-mmr-16-04-5165" ref-type="fig">Fig. 3C</xref>). These results demonstrated that BZ promoted the proliferation of C2C12 in addition to enhancing the expression of muscle differentiation marker genes such as myogenin and MyHC.</p>
<p>BZ treatment was indicated to enhance muscle peak force of BZ-fed mice (<xref rid="f1-mmr-16-04-5165" ref-type="fig">Fig. 1C</xref>), which is consistent with the results of bioinformatic analysis (<xref rid="tII-mmr-16-04-5165" ref-type="table">Tables II</xref> and <xref rid="tIII-mmr-16-04-5165" ref-type="table">III</xref>). The enriched potential KEGG biological pathways included calcium signaling pathway, TCA cycle, cardiac muscle contraction and arachidonic acid metabolism. TCA cycle is the energy generating reaction through the oxidation of carbohydrates, fats and proteins in the form of ATP. Calcium levels in the mitochondrial matrix are necessary for the activation of isocitrate dehydrogenase, one of the key regulatory enzymes of the TCA cycle (<xref rid="b46-mmr-16-04-5165" ref-type="bibr">46</xref>). The significantly enriched GO biological processes, which indicated the functional distribution of those candidate targets, included several metabolic processes, including cellular nitrogen compound, small molecule and lipid and secondary metabolic process. These results indicated that the mechanism of BZ may be closely associated with the energy metabolism. The expression levels of genes associated with the oxidative capacity of muscle cells in mitochondria were measured. The mitochondrial DNA marker, cyclooxygenase 2, normalized by genomic DNA marker, uncoupling protein 2, was significantly higher in BZ-incubated C2C12, indicative of increased mitochondrial content (<xref rid="f3-mmr-16-04-5165" ref-type="fig">Fig. 3D</xref>). NCoR1 targeting genes citrate synthase, long-chain acyl-CoA dehydrogenase, vascular endothelial growth factor isoform a-121 and -b were analyzed by RT-qPCR (<xref rid="f3-mmr-16-04-5165" ref-type="fig">Fig. 3E</xref>). These genes are involved in the regulation of mitochondrial function. Their mRNA expression levels in cells incubated with BZ containing rat serum were significantly increased in comparison with that of rat Ctrl serum-incubated cells. These results suggest that the aerobic capacity of myocytes was promoted by downregulation of NCoR1 following BZ treatment.</p>
</sec>
</sec>
</sec>
<sec sec-type="discussion">
<title>Discussion</title>
<p>In the present study, it was demonstrated that BZ could protect from simulated weightlessness-induced muscle atrophy. The muscle mass and isometric twitch force was observed to be ameliorated. Using the drugCIPHER-CS method, the potential targets of the compounds in BZ were predicted, and the interaction between these targets and potential pathways were analyzed. The results indicated that calcium signaling pathways, TCA cycle and lipid metabolism process serve an important role in the network. NCoR1 is one of the important targets that is involved in muscle differentiation and metabolism (<xref rid="b47-mmr-16-04-5165" ref-type="bibr">47</xref>). The experiments of the present study further verified their associations with muscle remodeling.</p>
<p>BZ was originally prescribed by Li Dongyuan in his book <italic>Treatise on the Spleen and Stomach</italic> (<xref rid="b18-mmr-16-04-5165" ref-type="bibr">18</xref>). BZ is believed in TCM to &#x2018;tonify qi and replenish the spleen&#x2019;, leading to an improvement to muscle health (<xref rid="b18-mmr-16-04-5165" ref-type="bibr">18</xref>).</p>
<p>In the present study, BZ was observed to regulate calcium signaling, TCA cycle, lipid metabolism process and NCoR1 protein expression by drugCIPHER-CS. Calcium signaling pathway and TCA cycle were identified to be involved in muscle metabolism and remodeling. Slow twitch oxidative muscle fibers maintain relatively high levels of Ca<sup>2&#x002B;</sup> concentrations, while fast twitch fibers require high-amplitude Ca<sup>2&#x002B;</sup> transients and lower ambient Ca<sup>2&#x002B;</sup> levels. The coupling of ATP production through TCA cycle, which skeletal muscle function is largely reliant on, to the requirement of a contracting muscle is ensured by Ca<sup>2&#x002B;</sup> on aerobic metabolism. In addition, Calcineurin has been demonstrated to be required for muscle regeneration and hypertrophy (<xref rid="b48-mmr-16-04-5165" ref-type="bibr">48</xref>).</p>
<p>Muscle wasting caused by spaceflight or unloading, is associated with a decreased number of quiescent and proliferating satellite cells, which begin the repairing process by differentiating and fusing with each other. In addition, satellite cell transplantation appears to be a clinical application for multiple muscle atrophies (<xref rid="b49-mmr-16-04-5165" ref-type="bibr">49</xref>,<xref rid="b50-mmr-16-04-5165" ref-type="bibr">50</xref>).</p>
<p>The impairment of oxidative metabolism and signs of mitochondrial dysfunction serves a major role in weightless muscle atrophy (<xref rid="b51-mmr-16-04-5165" ref-type="bibr">51</xref>). Previous studies indicated downregulation of metabolic enzymes and decreasing mitochondrial oxidative capacity appeared in the later phase of atrophic muscles (<xref rid="b52-mmr-16-04-5165" ref-type="bibr">52</xref>,<xref rid="b53-mmr-16-04-5165" ref-type="bibr">53</xref>). In addition, it has been demonstrated that the activation of mitochondrial fission is sufficient to lead to muscle wasting (<xref rid="b54-mmr-16-04-5165" ref-type="bibr">54</xref>,<xref rid="b55-mmr-16-04-5165" ref-type="bibr">55</xref>).</p>
<p>It has been previously observed that NCoR1 is a &#x2018;master modulator&#x2019; of the mitochondrial metabolism in muscle, which can reprogram muscle metabolism from a glycolytic to a more oxidative mitochondrial state, in addition, muscle-specific NCoR1 knockout mice exhibit increased muscle quantity and oxidative profile (<xref rid="b47-mmr-16-04-5165" ref-type="bibr">47</xref>). NCoR1 docks histone deacetylases, such as HDAC3 (<xref rid="b56-mmr-16-04-5165" ref-type="bibr">56</xref>), negatively correlated with the expression of MEF2, a transcription factor controlling muscle differentiation and development (<xref rid="b57-mmr-16-04-5165" ref-type="bibr">57</xref>). Chinese herbs have been identified to be closely associated with the regulation of muscle physiology. Astragali radix has been identified to exhibit protective and therapeutic effects on tail-suspension induced SOL muscle atrophy. These effects are associated with the control of increased mATPase activity (<xref rid="b58-mmr-16-04-5165" ref-type="bibr">58</xref>). A previous study indicated that ginsenosideRb1 stimulated adiponectin signaling through upregulation of AdipoR1 and AdipoR2 proteins in C2C12 muscle cells, in addition, glucose transporter 4, a crucial membrane protein transporting glucose into myocytes, was promoted to translocate to the cell surface (<xref rid="b59-mmr-16-04-5165" ref-type="bibr">59</xref>). Adiponectin signaling has been well established in the modulation of glucose levels and stimulation of fatty acid oxidation in myocytes (<xref rid="b60-mmr-16-04-5165" ref-type="bibr">60</xref>). In addition, mice fed with Angelica exhibited prolonged physical exercise duration and higher blood glucose and muscle glycogen level, indicating that Angelica (<xref rid="b61-mmr-16-04-5165" ref-type="bibr">61</xref>) improved energy utilization and exercise performance in mice. Angelica polysaccharides additionally promoted skeletal muscle satellite cell proliferation and stem cell factor receptor, c-kit, expression (<xref rid="b62-mmr-16-04-5165" ref-type="bibr">62</xref>). These herbs are also included in the formula of BZ.</p>
<p>The therapeutic application of BZ provides a novel means to counteract unloading-induced skeletal muscle atrophy. In the present study, through <italic>in vitro</italic> and <italic>in vivo</italic> experiments, it was established that BZ could protect from weightlessness-induced muscle atrophy and promote the proliferation and differentiation of myoblast cells. Its effect on muscle remodeling is by activating signaling pathways to reprogram gene expression to sustain muscle performance. This new understanding of the molecular mechanism of BZ makes the design of therapeutic compounds with improved pharmacological properties for the treatment of weightlessness-induced muscle atrophy possible.</p>
</sec>
</body>
<back>
<ack>
<title>Acknowledgements</title>
<p>The authors would like to thank Professor Jingping Song, from the China Astronaut Research and Training Center, for the help with cell culture. In addition, they would like to thank Mr. Guanghan Kan and Ms. Hongqing Song, from the China Astronaut Research and Training Center, for the help with animal experimental preparation. The present study was financially supported by the National Natural Scientific Foundation of China (project nos. 31170811, 31271225, 31325012, 30500663 and 11475035) and 1226 Major Project (project no. AWS16J018).</p>
</ack>
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<floats-group>
<fig id="f1-mmr-16-04-5165" position="float">
<label>Figure 1.</label>
<caption><p>The effect of BZ on skeletal muscle atrophy induced by tail suspension in mice. KM mice in HS and BZ group were suspended for 14 days, during which time BZ group mice were treated with BZ. (A) The ratios of SOL and GAS muscle weight to body weight in the mice of Ctrl, tail suspended and BZ treatment group. Data are presented as mean &#x00B1; standard deviation. &#x002A;P&#x003C;0.05; &#x002A;&#x002A;P&#x003C;0.01; &#x002A;&#x002A;&#x002A;P&#x003C;0.005; n=8 for each group. (B) Immunostaining for laminin of GAS muscle in Ctrl, tail suspension and BZ fed mice. Data are presented as the mean &#x00B1; standard deviation. &#x002A;P&#x003C;0.05; &#x002A;&#x002A;P&#x003C;0.01; &#x002A;&#x002A;&#x002A;P&#x003C;0.005. A total of 3 independent GAS cryosections and 8 fibers per section were counted for CSA analysis, n=8 for each group. (C) <italic>Ex vivo</italic> contractile properties of Ctrl, tail suspension and BZ fed mice, twitch force of GAS muscle from mice. Data are presented as the mean &#x00B1; standard deviation. &#x002A;P&#x003C;0.05; &#x002A;&#x002A;P&#x003C;0.01; &#x002A;&#x002A;&#x002A;P&#x003C;0.005; n=8 for each group. BZ, Bu Zhong Yi Qi decoction; KM, Kunming; HS, hindlimb suspended; SOL, soleus; GAS, gastrocnemius; Ctrl, control.</p></caption>
<graphic xlink:href="MMR-16-04-5165-g00.tif"/>
</fig>
<fig id="f2-mmr-16-04-5165" position="float">
<label>Figure 2.</label>
<caption><p>BZ reduces NCoR1 expression levels and promotes myogenesis in mice. (A) The expression of NCoR1 in GAS in the mice of Ctrl, tail suspended and BZ fed mice was detected by RT-qPCR. The values are normalized to Ctrl. (B) The expression of target genes of NCoR1 in GAS in Ctrl, tail suspended and BZ fed mice were detected by RT-qPCR. The values are normalized to the Ctrl. (C) The expression of Pax7, Myogenin and MyHC of GAS in Ctrl, tail suspended and BZ fed mice, detected by RT-qPCR. The values are normalized to the Ctrl. Data are presented as the mean &#x00B1; standard deviation. &#x002A;P&#x003C;0.05; &#x002A;&#x002A;P&#x003C;0.01; n=8 for each group. BZ, Bu Zhong Yi Qi decoction; NCoR1, nuclear receptor corepressor 1; GAS, gastrocnemius; Ctrl, control; RT-qPCR, reverse transcription-quantitative polymerase chain reaction; HS, hindlimb suspended; ns, non-significant.</p></caption>
<graphic xlink:href="MMR-16-04-5165-g01.tif"/>
</fig>
<fig id="f3-mmr-16-04-5165" position="float">
<label>Figure 3.</label>
<caption><p>BZ could reduce NCoR1 level and promote myogenesis and oxidative function. (A) The expression of NCoR1 in C2C12 cells cultured in GM, DM, high glucose DMEM with 4&#x0025; RS or high glucose DMEM with 4&#x0025; rat BZ serum for 3 days, was detected by RT-qPCR. The values are normalized to Ctrl. Data are presented as the mean &#x00B1; standard deviation. &#x002A;P&#x003C;0.05; &#x002A;&#x002A;&#x002A;P&#x003C;0.005; n=8 for each sample. (B) Light microscopic images and MTS assay for the proliferation of C2C12 cells cultured in GM, DM, RS and BZ for 3 days. (Cellular experiments were repeated in triplicate). (C) Expression of myogenin and MyHC in C2C12 cells cultured in GM, DM, RS and BZ for 3 days, was detected by RT-qPCR. The values are normalized to the Ctrl. Data are presented as the mean &#x00B1; standard deviation. &#x002A;P&#x003C;0.05; &#x002A;&#x002A;&#x002A;P&#x003C;0.005; GM/DM, n=3; RS/BZ, n=4. (D) Relative mitochondrial DNA content (Cox2) in C2C12 cells cultured in GM, DM, RS and BZ for 3 days was measured and normalized by genomic DNA content (Ucp2). n=3. (E) The expression of target genes of NCoR1 in different groups of C2C12 cells cultured in GM, DM, RS and BZ for 3 days, were detected by RT-qPCR. The values are normalized to CtrlC2C12 cells. Data are presented as the mean &#x00B1; standard deviation. &#x002A;P&#x003C;0.05; &#x002A;&#x002A;&#x002A;P&#x003C;0.005; GM/DM, n=3; RS/BZ, n=4. BZ, Bu Zhong Yi Qi decoction; NCoR1, nuclear receptor corepressor 1; GM, growth medium; DM, differentiation medium; DMEM, Dulbecco&#x0027;s modified Eagle&#x0027;s medium; RS, rat serum; RT-qPCR, reverse transcription-quantitative polymerase chain reaction; Ctrl, control; Cox2, cyclooxygenase 2; ns, non-significant.</p></caption>
<graphic xlink:href="MMR-16-04-5165-g02.tif"/>
</fig>
<table-wrap id="tI-mmr-16-04-5165" position="float">
<label>Table I.</label>
<caption><p>Primers used for reverse transcription-quantitative polymerase chain reaction analysis.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="bottom">Gene name</th>
<th align="center" valign="bottom">Forward primer</th>
<th align="center" valign="bottom">Reverse primer</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">NCoR1</td>
<td align="left" valign="top">5&#x2032;-CTGGTCTTTCAGCCACCATT-3&#x2032;</td>
<td align="left" valign="top">5&#x2032;-CCTTCATTGGATCCTCCATC-3&#x2032;</td>
</tr>
<tr>
<td align="left" valign="top">MEF2C</td>
<td align="left" valign="top">5&#x2032;-TCCATCAGCCATTTCAACAA-3&#x2032;</td>
<td align="left" valign="top">5&#x2032;-GTTACAGAGCCGAGGTGGAG-3&#x2032;</td>
</tr>
<tr>
<td align="left" valign="top">MEF2D</td>
<td align="left" valign="top">5&#x2032;-CTTCGCGTAACCGAGGATT-3&#x2032;</td>
<td align="left" valign="top">5&#x2032;-GGGACTAGTGATCAGTTCATGG-3&#x2032;</td>
</tr>
<tr>
<td align="left" valign="top">Myoglobin</td>
<td align="left" valign="top">5&#x2032;-CTGACGAAGGCCACTTTGCACCTCTG-3&#x2032;</td>
<td align="left" valign="top">5&#x2032;-GCACAAGATCCCGGTCAAGTACCTGGAG-3&#x2032;</td>
</tr>
<tr>
<td align="left" valign="top">MCK</td>
<td align="left" valign="top">5&#x2032;-TGAACTCGCCCGTCAGGCTGTTGAG-3&#x2032;</td>
<td align="left" valign="top">5&#x2032;-GATGTCATCCAGACTGGGGTGGACAACC-3&#x2032;</td>
</tr>
<tr>
<td align="left" valign="top">Pax7</td>
<td align="left" valign="top">5&#x2032;-CGATTAGCCGAGTGCTCAGA-3&#x2032;</td>
<td align="left" valign="top">5&#x2032;-GGAGGTCGGGTTCTGATTCC-3&#x2032;</td>
</tr>
<tr>
<td align="left" valign="top">Myogenin</td>
<td align="left" valign="top">5&#x2032;-GGTGCCCAGTGAATGCAACT-3&#x2032;</td>
<td align="left" valign="top">5&#x2032;-GCTGTCCACGATGGACGTAA-3&#x2032;</td>
</tr>
<tr>
<td align="left" valign="top">MyHC</td>
<td align="left" valign="top">5&#x2032;-CCAAGGGCCTGAATGAGGAG-3&#x2032;</td>
<td align="left" valign="top">5&#x2032;-GCAAAGGCTCCAGGTCTGAG-3&#x2032;</td>
</tr>
<tr>
<td align="left" valign="top">Citrate synthase</td>
<td align="left" valign="top">5&#x2032;-GGAGCCAAGAACTCATCCTG-3&#x2032;</td>
<td align="left" valign="top">5&#x2032;-TCTGGCCTGCTCCTTAGGTA-3&#x2032;</td>
</tr>
<tr>
<td align="left" valign="top">LCAD</td>
<td align="left" valign="top">5&#x2032;-GTAGCTTATGAATGTGTGCAACTC-3&#x2032;</td>
<td align="left" valign="top">5&#x2032;-GTCTTGCGATCAGCTCTTTCATTA-3&#x2032;</td>
</tr>
<tr>
<td align="left" valign="top">VEGF-B</td>
<td align="left" valign="top">5&#x2032;-AGCCACCAGAAGAAAGTGGT-3&#x2032;</td>
<td align="left" valign="top">5&#x2032;-GCTGGGCACTAGTTGTTTGA-3&#x2032;</td>
</tr>
<tr>
<td align="left" valign="top">VEGF-A 121</td>
<td align="left" valign="top">5&#x2032;-AACGATGAAGCCCTGGAGTG-3&#x2032;</td>
<td align="left" valign="top">5&#x2032;-TGAGAGGTCTGGTTCCCGA-3&#x2032;</td>
</tr>
<tr>
<td align="left" valign="top">GAPDH</td>
<td align="left" valign="top">5&#x2032;-TCACCACCATGGAGAAGGC-3&#x2032;</td>
<td align="left" valign="top">5&#x2032;-GCTAAGCAGTTGGTGGTGCA-3&#x2032;</td>
</tr>
<tr>
<td align="left" valign="top">COX2</td>
<td align="left" valign="top">5&#x2032;-CATCCCCTTCCTGCGAAGTT-3&#x2032;</td>
<td align="left" valign="top">5&#x2032;-TTTAAGTCCACTCCATGGCCC-3&#x2032;</td>
</tr>
<tr>
<td align="left" valign="top">UCP2</td>
<td align="left" valign="top">5&#x2032;-TGGCAGGTAGCACCACAGG-3&#x2032;</td>
<td align="left" valign="top">5&#x2032;-CATCTGGTCTTGCAGCAACTCT-3&#x2032;</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="tfn1-mmr-16-04-5165"><p>NCoR1, nuclear receptor corepressor 1; MEF2C, myocyte-specific enhancer factor 2C; MEF2D, myocyte-specific enhancer factor 2D; MCK, muscle creatine kinase; Pax7, paired Box 7; MyHC, myosin heavy chain; LCAD, long chain acyl-CoA dehydrogenase; VEGF-B, vascular endothelial growth factor B; VEGF-A 121, vascular endothelial growth factor A; GAPDH, glyceraldehyde-3-phosphate dehydrogenase; COX2, cytochrome c oxidase subunit 2; UCP2, uncoupling protein 2.</p></fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="tII-mmr-16-04-5165" position="float">
<label>Table II.</label>
<caption><p>Significantly enriched KEGG biological pathways among top 0.1&#x0025; candidate target genes of BZ composite compounds.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="bottom">KEGG pathway number and name</th>
<th align="center" valign="bottom">P-value</th>
<th align="center" valign="bottom">Coverage</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">hsa04020-Calcium signaling pathway</td>
<td align="center" valign="top">5.06&#x00D7;10<sup>&#x2212;5</sup></td>
<td align="left" valign="top">0.095505618</td>
</tr>
<tr>
<td align="left" valign="top">hsa00020-Citrate cycle</td>
<td align="center" valign="top">4.67&#x00D7;10<sup>&#x2212;4</sup></td>
<td align="left" valign="top">0.1875</td>
</tr>
<tr>
<td align="left" valign="top">hsa04260-Cardiac muscle contraction</td>
<td align="center" valign="top">9.95&#x00D7;10<sup>&#x2212;4</sup></td>
<td align="left" valign="top">0.1125</td>
</tr>
<tr>
<td align="left" valign="top">hsa00590-Arachidonic acid metabolism</td>
<td align="center" valign="top">2.42&#x00D7;10<sup>&#x2212;3</sup></td>
<td align="left" valign="top">0.120689655</td>
</tr>
<tr>
<td align="left" valign="top">hsa00510-N-Glycan biosynthesis</td>
<td align="center" valign="top">3.32&#x00D7;10<sup>&#x2212;3</sup></td>
<td align="left" valign="top">0.130434783</td>
</tr>
<tr>
<td align="left" valign="top">hsa00640-Propanoate metabolism</td>
<td align="center" valign="top">3.77&#x00D7;10<sup>&#x2212;3</sup></td>
<td align="left" valign="top">0.151515152</td>
</tr>
<tr>
<td align="left" valign="top">hsa04080-Neuroactive ligand-receptor interaction</td>
<td align="center" valign="top">8.15&#x00D7;10<sup>&#x2212;3</sup></td>
<td align="left" valign="top">0.059602649</td>
</tr>
<tr>
<td align="left" valign="top">hsa00561-Glycerolipid metabolism</td>
<td align="center" valign="top">1.42&#x00D7;10<sup>&#x2212;2</sup></td>
<td align="left" valign="top">0.111111111</td>
</tr>
<tr>
<td align="left" valign="top">hsa00512-O-Glycan biosynthesis</td>
<td align="center" valign="top">1.49&#x00D7;10<sup>&#x2212;2</sup></td>
<td align="left" valign="top">0.133333333</td>
</tr>
<tr>
<td align="left" valign="top">hsa00830-Retinol metabolism</td>
<td align="center" valign="top">1.65&#x00D7;10<sup>&#x2212;2</sup></td>
<td align="left" valign="top">0.09375</td>
</tr>
<tr>
<td align="left" valign="top">hsa05010-Alzheimer&#x0027;s disease</td>
<td align="center" valign="top">2.01&#x00D7;10<sup>&#x2212;2</sup></td>
<td align="left" valign="top">0.065088757</td>
</tr>
<tr>
<td align="left" valign="top">hsa04115-p53 signaling pathway</td>
<td align="center" valign="top">2.32&#x00D7;10<sup>&#x2212;2</sup></td>
<td align="left" valign="top">0.086956522</td>
</tr>
<tr>
<td align="left" valign="top">hsa05410-Hypertrophic cardiomyopathy</td>
<td align="center" valign="top">2.42&#x00D7;10<sup>&#x2212;2</sup></td>
<td align="left" valign="top">0.078651685</td>
</tr>
<tr>
<td align="left" valign="top">hsa05414-Dilated cardiomyopathy</td>
<td align="center" valign="top">2.84&#x00D7;10<sup>&#x2212;2</sup></td>
<td align="left" valign="top">0.076086957</td>
</tr>
<tr>
<td align="left" valign="top">hsa00190-Oxidative phosphorylation</td>
<td align="center" valign="top">2.97&#x00D7;10<sup>&#x2212;2</sup></td>
<td align="left" valign="top">0.066666667</td>
</tr>
<tr>
<td align="left" valign="top">hsa05412-Arrhythmogenic right ventricular cardiomyopathy</td>
<td align="center" valign="top">3.52&#x00D7;10<sup>&#x2212;2</sup></td>
<td align="left" valign="top">0.078947368</td>
</tr>
<tr>
<td align="left" valign="top">hsa00970-Aminoacyl-tRNA biosynthesis</td>
<td align="center" valign="top">4.20&#x00D7;10<sup>&#x2212;2</sup></td>
<td align="left" valign="top">0.097560976</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="tfn2-mmr-16-04-5165"><p>Pathways whose corresponding upper-tailed P-value of the hypergeometric cumulative distribution was &#x003C;0.05 were deemed to be significantly enriched by candidate target genes. Those pathways were ranked according to the order of the increasing P-values. The coverage for each pathway was referred to as the fraction of candidate target genes among all the pathway member genes. KEGG, Kyoto Encyclopedia of Genes and Genomes; BZ, Bu Zhong Yi Qi decoction.</p></fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="tIII-mmr-16-04-5165" position="float">
<label>Table III.</label>
<caption><p>Significantly enriched GO biological process term among top 0.1&#x0025; candidate target genes of BZ composite compounds.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="bottom">GO term ID</th>
<th align="center" valign="bottom">GO term name</th>
<th align="center" valign="bottom">P-value</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">GO:0009058</td>
<td align="left" valign="top">Biosynthetic process</td>
<td align="center" valign="top">2.27&#x00D7;10<sup>&#x2212;9</sup></td>
</tr>
<tr>
<td align="left" valign="top">GO:0034641</td>
<td align="left" valign="top">Cellular nitrogen compound metabolic process</td>
<td align="center" valign="top">5.20&#x00D7;10<sup>&#x2212;6</sup></td>
</tr>
<tr>
<td align="left" valign="top">GO:0044281</td>
<td align="left" valign="top">Small molecule metabolic process</td>
<td align="center" valign="top">2.22&#x00D7;10<sup>&#x2212;5</sup></td>
</tr>
<tr>
<td align="left" valign="top">GO:0006629</td>
<td align="left" valign="top">Lipid metabolic process</td>
<td align="center" valign="top">5.33&#x00D7;10<sup>&#x2212;5</sup></td>
</tr>
<tr>
<td align="left" valign="top">GO:0019748</td>
<td align="left" valign="top">Secondary metabolic process</td>
<td align="center" valign="top">1.45&#x00D7;10<sup>&#x2212;4</sup></td>
</tr>
<tr>
<td align="left" valign="top">GO:0003013</td>
<td align="left" valign="top">Circulatory system process</td>
<td align="center" valign="top">2.89&#x00D7;10<sup>&#x2212;3</sup></td>
</tr>
<tr>
<td align="left" valign="top">GO:0051276</td>
<td align="left" valign="top">Chromosome organization</td>
<td align="center" valign="top">1.08&#x00D7;10<sup>&#x2212;2</sup></td>
</tr>
<tr>
<td align="left" valign="top">GO:0006520</td>
<td align="left" valign="top">Cellular amino acid metabolic process</td>
<td align="center" valign="top">1.14&#x00D7;10<sup>&#x2212;2</sup></td>
</tr>
<tr>
<td align="left" valign="top">GO:0051186</td>
<td align="left" valign="top">Cofactor metabolic process</td>
<td align="center" valign="top">1.46&#x00D7;10<sup>&#x2212;2</sup></td>
</tr>
<tr>
<td align="left" valign="top">GO:0006399</td>
<td align="left" valign="top">tRNA metabolic process</td>
<td align="center" valign="top">2.28&#x00D7;10<sup>&#x2212;2</sup></td>
</tr>
<tr>
<td align="left" valign="top">GO:0006950</td>
<td align="left" valign="top">Response to stress</td>
<td align="center" valign="top">4.69&#x00D7;10<sup>&#x2212;2</sup></td>
</tr>
<tr>
<td align="left" valign="top">GO:0042592</td>
<td align="left" valign="top">Homeostatic process</td>
<td align="center" valign="top">4.87&#x00D7;10<sup>&#x2212;2</sup></td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="tfn3-mmr-16-04-5165"><p>The top 12 candidate target genes are significantly enriched with genes annotated with a GO term when its corresponding upper-tailed P-value of hypergeometric cumulative distribution was &#x003C;0.05. These GO terms are ranked according to the order of the increasing P-values. GO, gene ontology; BZ, Bu Zhong Yi Qi decoction.</p></fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="tIV-mmr-16-04-5165" position="float">
<label>Table IV.</label>
<caption><p>Drug target prediction and analysis.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="bottom">Potential drug-target</th>
<th align="center" valign="bottom">Degree in the protein interaction network</th>
<th align="center" valign="bottom">Interaction partners in the protein interaction network (gene ID: gene symbol)</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">10291:SF3A1</td>
<td align="center" valign="top">126</td>
<td align="left" valign="top">9939:RBM8A</td>
</tr>
<tr>
<td align="left" valign="top">10987:COPS5</td>
<td align="center" valign="top">113</td>
<td align="left" valign="top">6095:RORA</td>
</tr>
<tr>
<td align="left" valign="top">7520:XRCC5</td>
<td align="center" valign="top">111</td>
<td align="left" valign="top">6418:SET</td>
</tr>
<tr>
<td align="left" valign="top">9611:NCoR1</td>
<td align="center" valign="top">&#x00A0;&#x00A0;95</td>
<td align="left" valign="top">7704:ZBTB16</td>
</tr>
<tr>
<td align="left" valign="top">2091:FBL</td>
<td align="center" valign="top">&#x00A0;&#x00A0;85</td>
<td align="left" valign="top">3190:HNRNPK</td>
</tr>
<tr>
<td align="left" valign="top">6601:SMARCC2</td>
<td align="center" valign="top">&#x00A0;&#x00A0;82</td>
<td align="left" valign="top">10262:SF3B4</td>
</tr>
<tr>
<td align="left" valign="top">408:ARRB1</td>
<td align="center" valign="top">&#x00A0;&#x00A0;79</td>
<td align="left" valign="top">1855:DVL1</td>
</tr>
<tr>
<td align="left" valign="top">6633:SNRPD2</td>
<td align="center" valign="top">&#x00A0;&#x00A0;79</td>
<td align="left" valign="top">10250:SRRM1</td>
</tr>
<tr>
<td align="left" valign="top">6605:SMARCE1</td>
<td align="center" valign="top">&#x00A0;&#x00A0;76</td>
<td align="left" valign="top">7030:TFE3</td>
</tr>
<tr>
<td align="left" valign="top">6602:SMARCD1</td>
<td align="center" valign="top">&#x00A0;&#x00A0;74</td>
<td align="left" valign="top">1024:CDK8</td>
</tr>
<tr>
<td align="left" valign="top">86:ACTL6A</td>
<td align="center" valign="top">&#x00A0;&#x00A0;73</td>
<td align="left" valign="top">5469:MED1</td>
</tr>
<tr>
<td align="left" valign="top">7421:VDR</td>
<td align="center" valign="top">&#x00A0;&#x00A0;72</td>
<td align="left" valign="top">8204:NRIP1</td>
</tr>
<tr>
<td align="left" valign="top">50813:COPS7A</td>
<td align="center" valign="top">&#x00A0;&#x00A0;70</td>
<td align="left" valign="top">22919:MAPRE1</td>
</tr>
<tr>
<td align="left" valign="top">5705:PSMC5</td>
<td align="center" valign="top">&#x00A0;&#x00A0;70</td>
<td align="left" valign="top">2099:ESR1</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="tfn4-mmr-16-04-5165"><p>The proteins with the highest degree/betweeness centrality are referred to as those with the top 5&#x0025; degree/betweeness centrality in the protein interaction network. SF3A1, splicing factor 3a subunit 1; COPS5, COP9 signalosome subunit 5; XRCC5, X-ray repair cross complementing 5; NCoR1, nuclear receptor corepressor 1; FBL, fibrillarin; SMARCC2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2; ARRB1, arrestin &#x03B2;1; SNRPD2, small nuclear ribonucleoprotein D2 polypeptide; SMARCE1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1; SMARCD1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1; ACTL6A, actin-like 6A; VDR, vitamin D receptor; COPS7A, COP9 signalosome subunit 7A; PSMC5, proteasome 26S subunit, ATPase 5.</p></fn>
</table-wrap-foot>
</table-wrap>
</floats-group>
</article>
