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<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">Molecular Medicine Reports</journal-id>
<journal-title-group>
<journal-title>Molecular Medicine Reports</journal-title></journal-title-group>
<issn pub-type="ppub">1791-2997</issn>
<issn pub-type="epub">1791-3004</issn>
<publisher>
<publisher-name>D.A. Spandidos</publisher-name></publisher></journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3892/mmr.2012.1223</article-id>
<article-id pub-id-type="publisher-id">mmr-07-02-0495</article-id>
<article-categories>
<subj-group>
<subject>Articles</subject></subj-group></article-categories>
<title-group>
<article-title>Proteomic study reveals downregulation of apolipoprotein A1 in plasma of poorly controlled diabetes: A pilot study</article-title></title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>BHONSLE</surname><given-names>HEMANGI S.</given-names></name><xref rid="af1-mmr-07-02-0495" ref-type="aff">1</xref><xref rid="fn1-mmr-07-02-0495" ref-type="author-notes">&#x0002A;</xref></contrib>
<contrib contrib-type="author">
<name><surname>KORWAR</surname><given-names>ARVIND M.</given-names></name><xref rid="af1-mmr-07-02-0495" ref-type="aff">1</xref><xref rid="fn1-mmr-07-02-0495" ref-type="author-notes">&#x0002A;</xref></contrib>
<contrib contrib-type="author">
<name><surname>CHOUGALE</surname><given-names>ASHOK D.</given-names></name><xref rid="af1-mmr-07-02-0495" ref-type="aff">1</xref></contrib>
<contrib contrib-type="author">
<name><surname>KOTE</surname><given-names>SACHIN S.</given-names></name><xref rid="af1-mmr-07-02-0495" ref-type="aff">1</xref></contrib>
<contrib contrib-type="author">
<name><surname>DHANDE</surname><given-names>NITIN L.</given-names></name><xref rid="af2-mmr-07-02-0495" ref-type="aff">2</xref></contrib>
<contrib contrib-type="author">
<name><surname>SHELGIKAR</surname><given-names>KISHORE M.</given-names></name><xref rid="af2-mmr-07-02-0495" ref-type="aff">2</xref></contrib>
<contrib contrib-type="author">
<name><surname>KULKARNI</surname><given-names>MAHESH J.</given-names></name><xref rid="af1-mmr-07-02-0495" ref-type="aff">1</xref><xref ref-type="corresp" rid="c1-mmr-07-02-0495"/></contrib></contrib-group>
<aff id="af1-mmr-07-02-0495">
<label>1</label>Proteomics Facility, Division of Biochemical Sciences, Council of Scientific and Industrial Research, National Chemical Laboratory, Pune 411008, India</aff>
<aff id="af2-mmr-07-02-0495">
<label>2</label>Maharashtra Medical Research Society, Pune 411008, India</aff>
<author-notes>
<corresp id="c1-mmr-07-02-0495">Correspondence to: Dr Mahesh J. Kulkarni, Proteomics Facility, Division of Biochemical Sciences, Council of Scientific and Industrial Research, National Chemical Laboratory, Homi Bhabha Road, Pune 411008, India, E-mail: <email>mj.kulkarni@ncl.res.in</email></corresp><fn id="fn1-mmr-07-02-0495">
<label>&#x0002A;</label>
<p>Contributed equally</p></fn></author-notes>
<pub-date pub-type="ppub">
<month>2</month>
<year>2013</year></pub-date>
<pub-date pub-type="epub">
<day>04</day>
<month>12</month>
<year>2012</year></pub-date>
<volume>7</volume>
<issue>2</issue>
<fpage>495</fpage>
<lpage>498</lpage>
<history>
<date date-type="received">
<day>19</day>
<month>07</month>
<year>2012</year></date>
<date date-type="accepted">
<day>10</day>
<month>10</month>
<year>2012</year></date></history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2013, Spandidos Publications</copyright-statement>
<copyright-year>2013</copyright-year>
<license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/3.0">
<license-p>This is an open-access article licensed under a Creative Commons Attribution-NonCommercial 3.0 Unported License. The article may be redistributed, reproduced, and reused for non-commercial purposes, provided the original source is properly cited.</license-p></license></permissions>
<abstract>
<p>Proteomic approaches aid in gaining a better understanding of the pathophysiology of diabetic complications. In view of this, differential protein expression in diabetic plasma samples was studied by a combination of proteomic and western blot analyses. Diabetic plasma samples were categorized based on glycated haemoglobin levels as controlled diabetes (CD; 7&#x02013;8&#x00025;), poorly controlled diabetes (PCD; &gt;8&#x00025;) and non-diabetic control (ND;&lt;6.4&#x00025;). Two-dimensional electrophoresis and liquid chromatography-mass spectrometry revealed differential expression of proteins including upregulation of fibrinogen and haptoglobin and downregulation of vitamin D binding protein, &#x003B1;-1-antitrypsin, transthyretin and apolipoprotein A1 (Apo A1) in diabetic compared with non-diabetic plasma samples. Amongst these proteins, Apo A1 downregulation was prominent in PCD. Downregulation of Apo A1 may serve as an early predictive marker of diabetic complications.</p></abstract>
<kwd-group>
<kwd>HbA1c</kwd>
<kwd>biomarker</kwd>
<kwd>proteomics</kwd></kwd-group></article-meta></front>
<body>
<sec sec-type="intro">
<title>Introduction</title>
<p>Human plasma proteome analysis has the potential to ease disease diagnosis and therapeutic monitoring (<xref rid="b1-mmr-07-02-0495" ref-type="bibr">1</xref>,<xref rid="b2-mmr-07-02-0495" ref-type="bibr">2</xref>). Plasma protein biomarkers are useful for the diagnosis and prognosis of numerous diseases, including diabetes. Inability to utilize blood glucose is a hallmark of diabetes and leads to the development of numerous complications, including neuropathy, retinopathy, nephropathy and atherosclerosis (<xref rid="b3-mmr-07-02-0495" ref-type="bibr">3</xref>). Development of these complications is 2.5 times higher in patients with long-term poorly controlled glycaemic levels than controlled levels (<xref rid="b4-mmr-07-02-0495" ref-type="bibr">4</xref>). Furthermore, on the basis of glycated haemoglobin (HbA1c) levels diabetic subjects are categorized as having controlled diabetes (CD) and poorly controlled diabetes (PCD) with HbA1c levels &#x02264;8&#x00025; and &gt;8&#x00025;, respectively, of total haemoglobin (<xref rid="b5-mmr-07-02-0495" ref-type="bibr">5</xref>). To understand the molecular mechanisms of pathophysiology of diabetic complications, numerous studies have utilized proteomic approaches, which have been reviewed in great detail (<xref rid="b6-mmr-07-02-0495" ref-type="bibr">6</xref>). Pathology of diabetic complications is associated with increased generation of reactive oxygen species (ROS) resulting in oxidative, glyco-oxidative and carbonyl stress (<xref rid="b7-mmr-07-02-0495" ref-type="bibr">7</xref>). Following engagement with receptor for AGE (RAGE), advanced glycation end-products (AGEs) induce the generation of ROS and activation of the transcription factor NF-&#x003BA;B, causing changes in gene expression (<xref rid="b8-mmr-07-02-0495" ref-type="bibr">8</xref>). AGEs are also known to affect the activity of several plasma proteins. For example, ~50&#x00025; aspartate aminotransferase enzyme activity is inactivated as a result of glycation (<xref rid="b9-mmr-07-02-0495" ref-type="bibr">9</xref>). Similarly, impaired activity of glycated &#x003B1;-1-antitrypsin was observed in diabetes, thereby leading to protease-antiprotease imbalance (<xref rid="b10-mmr-07-02-0495" ref-type="bibr">10</xref>). Glycated transferrin demonstrated the deterioration of antioxidant capacity in diabetic patients (<xref rid="b11-mmr-07-02-0495" ref-type="bibr">11</xref>). Additionally, glyco-oxidative modification leads to protein aggregation resulting in protein instability. To prevent serious metabolic disturbances caused by the accumulation of glyco-oxidatively modified proteins, these proteins are further degraded by the proteasomal system (<xref rid="b12-mmr-07-02-0495" ref-type="bibr">12</xref>). Glyco-oxidative modification of protein results in the elicitation of autoantibodies against several diabetic plasma proteins. These proteins include albumin, insulin, carbonic anhydrase and heat shock proteins, thereby resulting in their decreased levels in diabetic plasma (<xref rid="b13-mmr-07-02-0495" ref-type="bibr">13</xref>). However, any variation in insulin levels affects the insulin-regulated protein synthesis of several proteins. For example, decreased insulin synthesis and resistance in diabetes affects the gene expression of albumin and fibrinogen (<xref rid="b14-mmr-07-02-0495" ref-type="bibr">14</xref>,<xref rid="b15-mmr-07-02-0495" ref-type="bibr">15</xref>). These factors contribute to differential protein expression. To compensate for the altered protein function and loss, enhanced or altered gene expression may occur, resulting in varying levels of proteins in diabetes.</p>
<p>Previous studies have reported differential expression of various proteins in diabetes, including &#x003B1;-1-antitrypsin, fibrinogen, vitamin D binding protein, complement C3 and apolipoprotein A1 (Apo A1) (<xref rid="b16-mmr-07-02-0495" ref-type="bibr">16</xref>&#x02013;<xref rid="b19-mmr-07-02-0495" ref-type="bibr">19</xref>). However, it is important to study differential protein expression in PCD to understand the pathophysiology associated with the development of diabetic complications. In the present study, we analyzed differential protein expression in the plasma of CD and PCD subjects using proteomic methods and validating the results by western and dot blot analysis. Analysis of PCD subjects has not previously been performed.</p></sec>
<sec sec-type="methods">
<title>Materials and methods</title>
<sec>
<title>Chemicals</title>
<p>Chemicals were obtained from Sigma-Aldrich (St. Louis, MO, USA) unless otherwise stated. Antibody against Apo A1 was purchased from Abcam, Cambridge, UK.</p></sec>
<sec>
<title>Clinical plasma sample collection</title>
<p>Blood samples were collected from diabetic patients at the Maharashtra Medical Research Society. Informed consent was obtained from all patients and the study was approved by the Joshi Hospital Ethics Committee. Fasting blood glucose and HbA1c levels were determined by using a glucometer (Bayer AG, Leverkusen, Germany) and in2it analyzer (Bio-Rad, Hercules, CA, USA), respectively. Plasma was obtained by EDTA treatment, followed by centrifugation at 1500 &#x000D7; g for 15 min. The supernatant was stored at &#x02212;80&#x000B0;C until further use.</p></sec>
<sec>
<title>Plasma sample preparation</title>
<p>Based on HbA1c levels, plasma samples were grouped into ND (&lt;6.4&#x00025;), CD (7&#x02013;8&#x00025;) and PCD (8.8&#x02013;12.3&#x00025;). Ten representative samples from each group were pooled and were used for proteomic analysis. Albumin and IgGs were depleted by using a PROTBA kit (Sigma-Aldrich) according to the manufacturer&#x02019;s instructions. Protein concentration was determined by using a Quick Start Bradford protein assay kit (Bio-Rad).</p></sec>
<sec>
<title>Two dimensional gel electrophoresis (2DE), image and western blot analysis</title>
<p>A depleted plasma protein sample (100 &#x003BC;g) was solubilized in 125 &#x003BC;l rehydration buffer containing 8 M urea, 2 M thiourea, 4&#x00025; CHAPS, 70 mM DTT, 0.1&#x00025; C7BzO and 1 &#x003BC;l ampholytes (pH 3&#x02013;10). The solubilized sample was loaded onto 7-cm non-linear IPG strips (pH 4&#x02013;7) and rehydrated overnight. Isoelectric focusing was performed by using the Protean IEF Cell (Bio-Rad) followed by SDS-PAGE separation. Resolved proteins on 12.5&#x00025; gel were visualized by CBB-R250 staining or by western blot analysis (using anti-Apo A1 polyclonal antibody). Stained gel images were captured using the GS 800 calibrated densitometer (Bio-Rad). Image analysis was performed using PDQUEST advanced software (Bio-Rad).</p></sec>
<sec>
<title>Trypsin digestion</title>
<p>CBB-stained protein spots were excised and destained by washing with 50&#x00025; acetonitrile (ACN)/50 mM ammonium bicarbonate. Proteins were reduced and alkylated by 10 mM DTT and 55 mM iodoacetamide, respectively, followed by overnight digestion with trypsin at 37&#x000B0;C. Digested peptides were extracted with 5&#x00025; formic acid in 50&#x00025; ACN and were reconstituted in 5 &#x003BC;l 0.1&#x00025; formic acid in 3&#x00025; ACN.</p></sec>
<sec>
<title>Liquid chromatography-mass spectrometry (LC-MS<sup>E</sup>) analysis and protein identification</title>
<p>LC-MS<sup>E</sup> analysis was performed with 2 &#x003BC;l peptide digest (100 ng/&#x003BC;l concentration) by using nanoACQUITY UPLC online coupled to SYNAPT HDMS system (Waters Corp., Milford, PA, USA) equipped with a nanolockspray ion source with a flow rate of 300 nl/min (external lockmass standard: Glu-fibrinopeptide) as described by Cheng <italic>et al</italic>(<xref rid="b20-mmr-07-02-0495" ref-type="bibr">20</xref>). Following MS<sup>E</sup> analysis, data were analyzed with Protein Lynx Global Server software (PLGS, version 2.4, Waters Corp.). Protein identification of processed samples was performed by database search against a human subset of UniProt containing 44,987 protein entries.</p></sec>
<sec>
<title>Dot blot analysis</title>
<p>Ten plasma samples from each ND, CD and PCD patient were diluted with PBS in 1:1,000 dilutions. The diluted sample (2 &#x003BC;l) was spotted onto nitrocellulose membranes. The membrane was air dried and blocked for 2 h with 5&#x00025; skimmed milk in TBS at 37&#x000B0;C. The membrane was then incubated with anti-Apo A1 antibody (1:7,000) for 1 h, washed twice with TBS-T (0.05&#x00025; Tween-20) and then incubated with biotinylated secondary antibody for 30 min. Immunodetection was performed by incubating membranes with streptavidin-conjugated horseradish peroxidase and Sigmafast DAB substrate.</p></sec>
<sec>
<title>Statistical analysis</title>
<p>Experiments were performed in triplicate. Statistical analysis was performed by the Student&#x02019;s t-test. Data were expressed as the mean &#x000B1; SD. P&lt;0.05 was considered to indicate a statistically significant difference.</p></sec></sec>
<sec sec-type="results">
<title>Results</title>
<p>Differential plasma protein expression was studied in CD and PCD clinical plasma samples following analysis of fasting plasma glucose, HbA1c levels, serum creatinine, high density lipoproteins (HDL), triglycerides and cholesterol levels (<xref rid="tI-mmr-07-02-0495" ref-type="table">Table I</xref>). Differentially expressed proteins were identified by 2DE and LC-MS<sup>E</sup> and are listed in <xref rid="tII-mmr-07-02-0495" ref-type="table">Table II</xref>. Densitometric analysis of 2DE gels revealed upregulation of fibrinogen and haptoglobin and downregulation of vitamin D binding protein, &#x003B1;-1-antitrypsin, transthyretin and Apo A1 in CD and PCD compared with ND samples (<xref rid="f1-mmr-07-02-0495" ref-type="fig">Fig. 1</xref>). However, no significant difference in differentially expressed proteins was detected between CD and PCD plasma with the exception of Apo A1, whose downregulation was more prominent in PCD. The observed downregulation of Apo A1 was validated by western blot analysis (<xref rid="f1-mmr-07-02-0495" ref-type="fig">Fig. 1</xref>) and dot-blot analysis of each clinical plasma sample from ND, CD and PCD (<xref rid="f2-mmr-07-02-0495" ref-type="fig">Fig. 2</xref>). Apo A1 downregulation in PCD was considered statistically significant (P&lt;0.05).</p></sec>
<sec sec-type="discussion">
<title>Discussion</title>
<p>Diabetic plasma proteomic studies are important for understanding the molecular mechanisms which lead to complications. Numerous studies have been performed comparing ND and CD plasma samples (<xref rid="b6-mmr-07-02-0495" ref-type="bibr">6</xref>). However, the pathophysiology of diabetic complications is demonstrated more clearly in PCD than CD. The present study was performed to identify differentially expressed proteins in PCD. Although fibrinogen, haptoglobin, VDBP, &#x003B1;-1-antitrypsin and transthyretin were found to be differentially expressed in patients with diabetes, their levels were not significantly different between CD and PCD. However, significant downregulation of Apo A1 was detected in PCD. Downregulation of Apo A1 is associated with the development of diabetic vascular complications mediated by the reverse cholesterol transport system (<xref rid="b21-mmr-07-02-0495" ref-type="bibr">21</xref>). Decreased levels of Apo A1 in PCD may be attributed to numerous reasons, including autoantibodies against Apo A1 (<xref rid="b22-mmr-07-02-0495" ref-type="bibr">22</xref>,<xref rid="b23-mmr-07-02-0495" ref-type="bibr">23</xref>), elevated levels of inflammatory molecules (<xref rid="b24-mmr-07-02-0495" ref-type="bibr">24</xref>) and insulin resistance (<xref rid="b25-mmr-07-02-0495" ref-type="bibr">25</xref>). The Apo B100/Apo A1 ratio predicts cardiovascular risk more accurately than the lipids, lipoproteins and lipid ratios (<xref rid="b26-mmr-07-02-0495" ref-type="bibr">26</xref>) and the ratio increases in PCD compared with CD plasma (<xref rid="b27-mmr-07-02-0495" ref-type="bibr">27</xref>). Furthermore, a negative correlation was observed between serum creatinine levels and Apo A1, which supports the incidence of chronic kidney disease with lower plasma HDL-cholesterol levels (<xref rid="b28-mmr-07-02-0495" ref-type="bibr">28</xref>). Therefore, lower levels of Apo A1 in PCD may be associated with increased risk of cardiovascular and kidney disorders. Thus, downregulation of Apo A1 may serve as an early predictive marker for diabetic complications.</p></sec></body>
<back>
<ack>
<title>Acknowledgements</title>
<p>The authors thank Dr Vidya Gupta, Chair, Biochemical, for assistance in establishing collaboration with Joshi Hospital; Dr. A.M. Deshpande, Chairman of MMRS for his support and the Lady Tata Memorial Trust for Senior Research Fellowship. This study was carried out under CSIR network project NWP0004.</p></ack>
<ref-list>
<title>References</title>
<ref id="b1-mmr-07-02-0495"><label>1</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Anderson</surname><given-names>NL</given-names></name><name><surname>Anderson</surname><given-names>NG</given-names></name></person-group><article-title>The human plasma proteome: history, character and diagnostic prospects</article-title><source>Mol Cell Proteomics</source><volume>1</volume><fpage>845</fpage><lpage>867</lpage><year>2002</year></element-citation></ref>
<ref id="b2-mmr-07-02-0495"><label>2</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Anderson</surname><given-names>NL</given-names></name></person-group><article-title>The clinical plasma proteome: a survey of clinical assays for proteins in plasma and serum</article-title><source>Clin Chem</source><volume>56</volume><fpage>177</fpage><lpage>185</lpage><year>2010</year></element-citation></ref>
<ref id="b3-mmr-07-02-0495"><label>3</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Taylor</surname><given-names>R</given-names></name><name><surname>Agius</surname><given-names>L</given-names></name></person-group><article-title>The biochemistry of diabetes</article-title><source>Biochem J</source><volume>250</volume><fpage>625</fpage><lpage>640</lpage><year>1988</year></element-citation></ref>
<ref id="b4-mmr-07-02-0495"><label>4</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Chase</surname><given-names>HP</given-names></name><name><surname>Jackson</surname><given-names>WE</given-names></name><name><surname>Hoops</surname><given-names>SL</given-names></name><etal/></person-group><article-title>Glucose control and the renal and retinal complications of insulin-dependent diabetes</article-title><source>JAMA</source><volume>261</volume><fpage>1155</fpage><lpage>1160</lpage><year>1989</year></element-citation></ref>
<ref id="b5-mmr-07-02-0495"><label>5</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Takahashi</surname><given-names>S</given-names></name><name><surname>Uchino</surname><given-names>H</given-names></name><name><surname>Shimizu</surname><given-names>T</given-names></name><etal/></person-group><article-title>Comparison of glycated albumin (GA) and glycated hemoglobin (HbA1c) in type 2 diabetic patients: usefulness of GA for evaluation of short-term changes in glycemic control</article-title><source>Endocr J</source><volume>54</volume><fpage>139</fpage><lpage>144</lpage><year>2007</year></element-citation></ref>
<ref id="b6-mmr-07-02-0495"><label>6</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Sundsten</surname><given-names>T</given-names></name><name><surname>Ortsater</surname><given-names>H</given-names></name></person-group><article-title>Proteomics in diabetes research</article-title><source>Mol Cell Endocrinol</source><volume>297</volume><fpage>93</fpage><lpage>103</lpage><year>2009</year></element-citation></ref>
<ref id="b7-mmr-07-02-0495"><label>7</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Brownlee</surname><given-names>M</given-names></name></person-group><article-title>Biochemistry and molecular cell biology of diabetic complications</article-title><source>Nature</source><volume>414</volume><fpage>813</fpage><lpage>820</lpage><year>2001</year></element-citation></ref>
<ref id="b8-mmr-07-02-0495"><label>8</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Giacco</surname><given-names>F</given-names></name><name><surname>Brownlee</surname><given-names>M</given-names></name></person-group><article-title>Oxidative stress and diabetic complications</article-title><source>Circ Res</source><volume>107</volume><fpage>1058</fpage><lpage>1070</lpage><year>2010</year></element-citation></ref>
<ref id="b9-mmr-07-02-0495"><label>9</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Bousova</surname><given-names>I</given-names></name><name><surname>Bakala</surname><given-names>H</given-names></name><name><surname>Chudacek</surname><given-names>R</given-names></name><etal/></person-group><article-title>Glycation-induced inactivation of aspartate aminotransferase, effect of uric acid</article-title><source>Mol Cell Biochem</source><volume>278</volume><fpage>85</fpage><lpage>92</lpage><year>2005</year></element-citation></ref>
<ref id="b10-mmr-07-02-0495"><label>10</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Hashemi</surname><given-names>M</given-names></name><name><surname>Naderi</surname><given-names>M</given-names></name><name><surname>Rashidi</surname><given-names>H</given-names></name><etal/></person-group><article-title>Impaired activity of serum alpha-1-antitrypsin in diabetes mellitus</article-title><source>Diabetes Res Clin Pract</source><volume>75</volume><fpage>246</fpage><lpage>248</lpage><year>2007</year></element-citation></ref>
<ref id="b11-mmr-07-02-0495"><label>11</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Mohammad</surname><given-names>TG</given-names></name><name><surname>Mojtaba</surname><given-names>R</given-names></name><name><surname>Mohsen</surname><given-names>R</given-names></name></person-group><article-title>Study of nonenzymatic glycation of transferrin and its effect on iron-binding antioxidant capacity</article-title><source>Iran J Basic Med Sci</source><volume>13</volume><fpage>194</fpage><lpage>199</lpage><year>2010</year></element-citation></ref>
<ref id="b12-mmr-07-02-0495"><label>12</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Jung</surname><given-names>T</given-names></name><name><surname>Grune</surname><given-names>T</given-names></name></person-group><article-title>The proteasome and its role in the degradation of oxidized proteins</article-title><source>IUBMB Life</source><volume>11</volume><fpage>743</fpage><lpage>752</lpage><year>2008</year></element-citation></ref>
<ref id="b13-mmr-07-02-0495"><label>13</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Winter</surname><given-names>WE</given-names></name><name><surname>Schatz</surname><given-names>DA</given-names></name></person-group><article-title>Autoimmune markers in diabetes</article-title><source>Clin Chem</source><volume>57</volume><fpage>168</fpage><lpage>175</lpage><year>2011</year></element-citation></ref>
<ref id="b14-mmr-07-02-0495"><label>14</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Tessari</surname><given-names>P</given-names></name><name><surname>Kiwanuka</surname><given-names>E</given-names></name><name><surname>Millioni</surname><given-names>R</given-names></name><etal/></person-group><article-title>Albumin and fibrinogen synthesis and insulin effect in type 2 diabetic patients with normoalbuminuria</article-title><source>Diabetes Care</source><volume>29</volume><fpage>323</fpage><lpage>328</lpage><year>2006</year></element-citation></ref>
<ref id="b15-mmr-07-02-0495"><label>15</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Peavy</surname><given-names>DE</given-names></name><name><surname>Taylor</surname><given-names>JM</given-names></name><name><surname>Jefferson</surname><given-names>LS</given-names></name></person-group><article-title>Correlation of albumin production rates and albumin mRNA levels in livers of normal, diabetic and insulin-treated diabetic rats</article-title><source>Proc Natl Acad Sci USA</source><volume>75</volume><fpage>5879</fpage><lpage>5883</lpage><year>1978</year></element-citation></ref>
<ref id="b16-mmr-07-02-0495"><label>16</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Blanton</surname><given-names>D</given-names></name><name><surname>Han</surname><given-names>Z</given-names></name><name><surname>Bierschenk</surname><given-names>L</given-names></name><etal/></person-group><article-title>Reduced serum vitamin D-binding protein levels are associated with type 1 diabetes</article-title><source>Diabetes</source><volume>60</volume><fpage>2566</fpage><lpage>2570</lpage><year>2011</year></element-citation></ref>
<ref id="b17-mmr-07-02-0495"><label>17</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Ceriello</surname><given-names>A</given-names></name></person-group><article-title>Fibrinogen and diabetes mellitus: is it time for intervention trials?</article-title><source>Diabetologia</source><volume>40</volume><fpage>731</fpage><lpage>734</lpage><year>1997</year></element-citation></ref>
<ref id="b18-mmr-07-02-0495"><label>18</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Engstrom</surname><given-names>G</given-names></name><name><surname>Hedblad</surname><given-names>B</given-names></name><name><surname>Eriksson</surname><given-names>KF</given-names></name><etal/></person-group><article-title>Complement C3 is a risk factor for the development of diabetes. A population-based cohort study</article-title><source>Diabetes</source><volume>54</volume><fpage>570</fpage><lpage>575</lpage><year>2005</year></element-citation></ref>
<ref id="b19-mmr-07-02-0495"><label>19</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Lapolla</surname><given-names>A</given-names></name><name><surname>Brioschi</surname><given-names>M</given-names></name><name><surname>Banfi</surname><given-names>C</given-names></name><etal/></person-group><article-title>On the search for glycated lipoprotein ApoA-I in the plasma of diabetic and nephropathic patients</article-title><source>J Mass Spectrom</source><volume>43</volume><fpage>74</fpage><lpage>81</lpage><year>2008</year></element-citation></ref>
<ref id="b20-mmr-07-02-0495"><label>20</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Cheng</surname><given-names>FY</given-names></name><name><surname>Blackburn</surname><given-names>K</given-names></name><name><surname>Lin</surname><given-names>YM</given-names></name><etal/></person-group><article-title>Absolute protein quantification by LC/MS(E) for global analysis of salicylic acid-induced plant protein secretion responses</article-title><source>J Proteome Res</source><volume>8</volume><fpage>82</fpage><lpage>93</lpage><year>2009</year></element-citation></ref>
<ref id="b21-mmr-07-02-0495"><label>21</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Quintao</surname><given-names>EC</given-names></name><name><surname>Medina</surname><given-names>WL</given-names></name><name><surname>Passarelli</surname><given-names>M</given-names></name></person-group><article-title>Reverse cholesterol transport in diabetes mellitus</article-title><source>Diabetes Metab Res Rev</source><volume>16</volume><fpage>237</fpage><lpage>250</lpage><year>2000</year></element-citation></ref>
<ref id="b22-mmr-07-02-0495"><label>22</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Vuilleumier</surname><given-names>N</given-names></name><name><surname>Bas</surname><given-names>S</given-names></name><name><surname>Pagano</surname><given-names>S</given-names></name><etal/></person-group><article-title>Anti-apolipoprotein A-1 IgG predicts major cardiovascular events in patients with rheumatoid arthritis</article-title><source>Arthritis Rheum</source><volume>62</volume><fpage>2640</fpage><lpage>2650</lpage><year>2010</year></element-citation></ref>
<ref id="b23-mmr-07-02-0495"><label>23</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Montecucco</surname><given-names>F</given-names></name><name><surname>Vuilleumier</surname><given-names>N</given-names></name><name><surname>Pagano</surname><given-names>S</given-names></name><etal/></person-group><article-title>Anti-Apolipoprotein A-1 auto-antibodies are active mediators of atherosclerotic plaque vulnerability</article-title><source>Eur Heart J</source><volume>32</volume><fpage>412</fpage><lpage>421</lpage><year>2011</year></element-citation></ref>
<ref id="b24-mmr-07-02-0495"><label>24</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Haas</surname><given-names>MJ</given-names></name><name><surname>Horani</surname><given-names>M</given-names></name><name><surname>Mreyoud</surname><given-names>A</given-names></name><etal/></person-group><article-title>Suppression of apolipoprotein AI gene expression in HepG2 cells by TNF alpha and IL-1beta</article-title><source>Biochim Biophys Acta</source><volume>1623</volume><fpage>120</fpage><lpage>128</lpage><year>2003</year></element-citation></ref>
<ref id="b25-mmr-07-02-0495"><label>25</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Mooradian</surname><given-names>AD</given-names></name><name><surname>Haas</surname><given-names>MJ</given-names></name><name><surname>Wong</surname><given-names>NC</given-names></name></person-group><article-title>Transcriptional control of apolipoprotein A-I gene expression in diabetes</article-title><source>Diabetes</source><volume>53</volume><fpage>513</fpage><lpage>520</lpage><year>2004</year></element-citation></ref>
<ref id="b26-mmr-07-02-0495"><label>26</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Mallick</surname><given-names>KA</given-names></name><name><surname>Joshi</surname><given-names>MR</given-names></name><name><surname>Bhat</surname><given-names>PG</given-names></name></person-group><article-title>A study on Apo B100/Apo A-I ratio in uncontrolled type 2 diabetes mellitus</article-title><source>Int J Appl Biol Pharm Technol</source><volume>2</volume><fpage>379</fpage><lpage>384</lpage><year>2011</year></element-citation></ref>
<ref id="b27-mmr-07-02-0495"><label>27</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Wagner</surname><given-names>AM</given-names></name><name><surname>Ordonez-Llanos</surname><given-names>J</given-names></name></person-group><article-title>Apolipoproteins and prediction of fatal myocardial infarction</article-title><source>Lancet</source><volume>359</volume><fpage>1863</fpage><lpage>1864</lpage><year>2002</year></element-citation></ref>
<ref id="b28-mmr-07-02-0495"><label>28</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Zoppini</surname><given-names>G</given-names></name><name><surname>Targher</surname><given-names>G</given-names></name><name><surname>Chonchol</surname><given-names>M</given-names></name><etal/></person-group><article-title>Higher HDL cholesterol levels are associated with a lower incidence of chronic kidney disease in patients with type 2 diabetes</article-title><source>Nutr Metab Cardiovasc Dis</source><volume>19</volume><fpage>580</fpage><lpage>586</lpage><year>2009</year></element-citation></ref></ref-list></back>
<floats-group>
<fig id="f1-mmr-07-02-0495" position="float">
<label>Figure 1</label>
<caption>
<p>(A) 2DE analysis of ND, CD and PCD clinical plasma samples. (B) Densitometric analysis of differentially expressed proteins from ND, CD and PCD samples. <sup>&#x0002A;</sup>P&lt;0.005 compared with ND; <sup>&#x0002A;&#x0002A;</sup>P&lt;0.05 compared with CD. 2DE, two-dimensional gel electrophoresis; ND, non-diabetic; CD, controlled diabetic; PCD, poorly controlled diabetic.</p></caption>
<graphic xlink:href="MMR-07-02-0495-g00.gif"/></fig>
<fig id="f2-mmr-07-02-0495" position="float">
<label>Figure 2</label>
<caption>
<p>Dot blot analysis of ND, CD and PCD samples using anti-apolipoprotein A1 antibody. Significantly reduced levels of apolipoprotein A1 levels were observed in PCD compared with ND and CD. ND, non-diabetic; CD, controlled diabetic; PCD, poorly controlled diabetic; B, Blank. <sup>&#x0002A;</sup>P&lt;0.05; <sup>&#x0002A;&#x0002A;</sup>P&lt;0.03.</p></caption>
<graphic xlink:href="MMR-07-02-0495-g01.gif"/></fig>
<table-wrap id="tI-mmr-07-02-0495" position="float">
<label>Table I</label>
<caption>
<p>Parameters evaluated in CD, ND and PCD for 2DE, western blot and LC-MSE analysis.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="bottom">Subjects</th>
<th align="center" valign="bottom">Fasting plasma glucose (mg/dl)</th>
<th align="center" valign="bottom">HbA1c (&#x00025;)</th>
<th align="center" valign="bottom">Serum creatinine (mg/dl)</th>
<th align="center" valign="bottom">HDL (mg/dl)</th>
<th align="center" valign="bottom">Triglycerides (mg/dl)</th>
<th align="center" valign="bottom">Cholesterol (mg/dl)</th></tr></thead>
<tbody>
<tr>
<td align="left" valign="top">ND</td>
<td align="center" valign="top">87.9&#x000B1;11.7</td>
<td align="left" valign="top">5.5&#x000B1;0.3</td>
<td align="left" valign="top">0.7&#x000B1; 0.05</td>
<td align="left" valign="top">50.6&#x000B1;5.6</td>
<td align="center" valign="top">91.0&#x000B1;22.6</td>
<td align="center" valign="top">145.1&#x000B1;15.4</td></tr>
<tr>
<td align="left" valign="top">CD</td>
<td align="center" valign="top">92.8&#x000B1;11.55<xref rid="tfn2-mmr-07-02-0495" ref-type="table-fn">a</xref></td>
<td align="left" valign="top">7.2&#x000B1;0.6<xref rid="tfn2-mmr-07-02-0495" ref-type="table-fn">a</xref></td>
<td align="left" valign="top">0.8&#x000B1;0.02<xref rid="tfn2-mmr-07-02-0495" ref-type="table-fn">a</xref></td>
<td align="left" valign="top">42.7&#x000B1;6.2<xref rid="tfn2-mmr-07-02-0495" ref-type="table-fn">a</xref></td>
<td align="center" valign="top">116.3&#x000B1;19.2<xref rid="tfn2-mmr-07-02-0495" ref-type="table-fn">a</xref></td>
<td align="center" valign="top">146.0&#x000B1;14.0</td></tr>
<tr>
<td align="left" valign="top">PCD</td>
<td align="center" valign="top">187.3&#x000B1;23.7<xref rid="tfn3-mmr-07-02-0495" ref-type="table-fn">b</xref></td>
<td align="left" valign="top">9.9&#x000B1;1.0<xref rid="tfn3-mmr-07-02-0495" ref-type="table-fn">b</xref></td>
<td align="left" valign="top">1.1&#x000B1;0.17<xref rid="tfn3-mmr-07-02-0495" ref-type="table-fn">b</xref></td>
<td align="left" valign="top">33.0&#x000B1;2.1<xref rid="tfn3-mmr-07-02-0495" ref-type="table-fn">b</xref></td>
<td align="center" valign="top">219.3&#x000B1;16.8<xref rid="tfn3-mmr-07-02-0495" ref-type="table-fn">b</xref></td>
<td align="center" valign="top">200.0&#x000B1;30.3</td></tr></tbody></table>
<table-wrap-foot><fn id="tfn1-mmr-07-02-0495">
<p>Data are shown as the mean &#x000B1; SD;</p></fn><fn id="tfn2-mmr-07-02-0495">
<label>a</label>
<p>P&lt;0.005, vs. ND;</p></fn><fn id="tfn3-mmr-07-02-0495">
<label>b</label>
<p>P&lt;0.05, vs. CD.</p></fn><fn id="tfn4-mmr-07-02-0495">
<p>2DE, two-dimensional gel electrophoresis; LC-MS<sup>E</sup>, liquid chromatography-mass spectrometry; ND, non-diabetic; CD, controlled diabetic; PCD, poorly controlled diabetic; HDL, high density lipoprotein; HbAlc, glycated haemoglobin.</p></fn></table-wrap-foot></table-wrap>
<table-wrap id="tII-mmr-07-02-0495" position="float">
<label>Table II</label>
<caption>
<p>Protein identification and fold expression in CD, ND and PCD using 2DE followed by LC-MS<sup>E</sup> analysis.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="bottom">Spot no.</th>
<th align="center" valign="bottom">Protein name</th>
<th align="center" valign="bottom">Accession number</th>
<th align="center" valign="bottom">MW (Da)</th>
<th align="center" valign="bottom">pI (pH)</th>
<th align="center" valign="bottom">PLGS Score</th>
<th align="center" valign="bottom">Coverage (&#x00025;)</th>
<th align="center" valign="bottom">Fold change (CD/ND)</th>
<th align="center" valign="bottom">Fold change (PCD/CD)</th></tr></thead>
<tbody>
<tr>
<td align="left" valign="top">1</td>
<td align="left" valign="top">&#x003B1;1 antitrypsin</td>
<td align="center" valign="top">P01009</td>
<td align="center" valign="top">46707</td>
<td align="center" valign="top">5.24</td>
<td align="left" valign="top">1130.88</td>
<td align="center" valign="top">34.92</td>
<td align="center" valign="top">0.78</td>
<td align="center" valign="top">1.05</td></tr>
<tr>
<td align="left" valign="top">2</td>
<td align="left" valign="top">Vitamin D binding protein</td>
<td align="center" valign="top">P02774</td>
<td align="center" valign="top">52929</td>
<td align="center" valign="top">5.23</td>
<td align="left" valign="top">7865.01</td>
<td align="center" valign="top">51.05</td>
<td align="center" valign="top">0.77</td>
<td align="center" valign="top">1.04</td></tr>
<tr>
<td align="left" valign="top">3</td>
<td align="left" valign="top">Fibrinogen &#x003B3; chain</td>
<td align="center" valign="top">P02679</td>
<td align="center" valign="top">51478</td>
<td align="center" valign="top">5.23</td>
<td align="left" valign="top">3187.94</td>
<td align="center" valign="top">31.78</td>
<td align="center" valign="top">1.87</td>
<td align="center" valign="top">1.08</td></tr>
<tr>
<td align="left" valign="top">4</td>
<td align="left" valign="top">Apolipoprotein A1</td>
<td align="center" valign="top">P02647</td>
<td align="center" valign="top">30758</td>
<td align="center" valign="top">5.43</td>
<td align="left" valign="top">1290.93</td>
<td align="center" valign="top">32.20</td>
<td align="center" valign="top">0.5</td>
<td align="center" valign="top">0.6</td></tr>
<tr>
<td align="left" valign="top">5</td>
<td align="left" valign="top">Haptoglobin</td>
<td align="center" valign="top">P00738</td>
<td align="center" valign="top">25176</td>
<td align="center" valign="top">6.11</td>
<td align="left" valign="top">3442.24</td>
<td align="center" valign="top">48.52</td>
<td align="center" valign="top">1.64</td>
<td align="center" valign="top">1.03</td></tr>
<tr>
<td align="left" valign="top">6</td>
<td align="left" valign="top">Transthyretin</td>
<td align="center" valign="top">P02766</td>
<td align="center" valign="top">15877</td>
<td align="center" valign="top">5.39</td>
<td align="left" valign="top">9106.519</td>
<td align="center" valign="top">45.83</td>
<td align="center" valign="top">0.68</td>
<td align="center" valign="top">1.02</td></tr></tbody></table>
<table-wrap-foot><fn id="tfn5-mmr-07-02-0495">
<p>2DE, two-dimensional gel electrophoresis; LC-MS<sup>E</sup>, liquid chromatography-mass spectrometry; ND, non-diabetic; CD, controlled diabetic; PCD, poorly controlled diabetic.</p></fn></table-wrap-foot></table-wrap></floats-group></article>
