The lentiviral small interfering (si)RNA pRNAT-U6.2/Lenti vectors were obtained from GenScript Biotechnology (Piscataway, NJ, USA). The lentiviral packaging cell line 293T and the human lung cancer cell line A549 were purchased from the China Center for Type Culture Collection (CCTCC; Wuhan, Hubei, China). The E. coli DH5α restriction enzymes (BamHI and XhoI) and the T4 DNA ligase were purchased from Promega (Madison, WI, USA). The RPMI-1640 medium and the fetal bovine serum (FBS) were purchased from Hyclone Biotechnology (Waltham, MA, USA). The liposomes (Lipofectamine™ 2000) and G418 were purchased from Invitrogen Biotechnology (Carlsbad, CA, USA). The RNA Extraction, Plasmid DNA Extraction and Gel DNA Isolation kits were obtained from Qiagen Biotechnology (Hilden, Germany). The study was approved by the ethics committee of Zhengzhou University.

Promega, Ambion and Invitrogen siRNA target sequence analysis and design software were used to scan the human-specific BECLIN1 cDNA coding sequences (NM_003766). The siRNA target sequences were based on basic design principles and a NCBI Basic Local Alignment Search Tool (BLAST) homology analysis. The target sequences were ascertained in 356–374 bits (GAGAGGAGCCATTTATTGA). The small hairpin (sh)DNA single-chains were synthesized and BamHI and XhoI enzyme residues were added at the two ends. This process was performed by Shanghai Bio-engineering Biotechnology (Shanghai, China). The designed sequences encoding the region of BECLIN1 were inserted between the BamHI and XhoI sites of the pRNAT-U6.2/Lenti plasmid. Competent E.coli were transformed with the recombinants following the manufacturer's recommendations. The positive clones were confirmed by PCR amplification screening and sequencing.

Three recombinant lentiviral vectors, empty lentiviral vectors and secondary packaging plasmids were co-transfected into the 293T cells using 36 ml Lipofectamine 2000 reagent, according to the manufacturer's instructions. The obtained BECN1 siRNA lentiviral fake virus particle solutions were designated as Lv-si356 and the Lv-control and were stored at −80°C until use. The human NSCLC A549 cell lines were cultured in RPMI-1640 medium supplemented with 10% defined FBS. The day prior to infection, the cells were plated into a tissue culture plate to 80% confluence. The human NSCLC A549 cell lines were infected by the Lv-si356- and Lv-Control-prepared lentiviral particles. After 24 h, the medium was replaced and the culture was continued. To obtain a stable infection, the cell lines were screened by G418 for 3 weeks.

Total RNA was isolated using TRIzol reagent (Invitrogen) following the manufacturer's instructions. The amount of RNA was measured spectrophotometrically by absorbance at 260 nm and the purity of the RNA was estimated by the ratio of the absorbance at A260/280. Reverse transcription of 2 μg total RNA was performed with Moloney murine leukemia virus (MMLV) reverse transcriptase (Promega, USA) using oligo (dT)₁₈ (Promega) as the reverse transcription primer. The reaction conditions for the reverse transcription were as follows: 2 μg of total RNA was incubated with 100 pmol/l oligo (dT)₁₈ primer at 72°C for 10 min and rapidly chilled on ice, then 2 μl 10 mM dNTPs (Promega) and 4 μl 5X MMLV buffer (Promega) were added. The mixtures were incubated at 37°C for 5 min. The mixture containing 200 units Moloney murine leukemia virus reverse transcriptase (Promega) was run at 42°C for 1 h. The reaction was then heated at 72°C for 10 min and stored at −20°C until use.

To quantitatively determine the level of the mRNA expression of BECLIN1, the primer pairs were tested empirically for amplification from 100 ng cDNA. The optimal annealing temperature was determined by testing the generation of a single band of the primers on the gels and then a specific primer was successfully identified for BECLIN1. Quantitative real-time PCR reactions were performed on the ABI Prism 7000 Sequence Detection System (Applied Biosystems, Foster City, CA, USA). For the SYBR-Green II-based quantitative real-time PCR reactions (Takara, Shiga, Japan), each 30 μl reaction contained 0.4 μM primer pairs, 100 ng cDNA, 15 μl SYBR-Green, 0.6 μl ROX as a fluorescence internal control and ddH₂O. The primers were as follows: BECLIN1 forward, 5′-GGCTGAGAGACTGGATCAGG-3′ and reverse, 5′-CTGCGTCTGGGCATAACG-3′; GAPDH forward, 5′-GGACTGACCTGCCGTCTAG-3′ and reverse, 5′-TAGCCCAGGATGCCCTTGAG-3′. The amplification program comprised two stages, with an initial 95°C Taq activation stage for 10 min followed by 45 cycles of 95°C denaturation for 5 sec and 60°C annealing for 35 sec. Subsequent to the amplification, a melting curve analysis was performed by collecting fluorescence data. GAPDH served as an internal control. The comparative threshold cycle (2^−ΔΔCT) method was used to enable quantification of the mRNA of these genes. All sample analyses were performed in duplicate. The relative amount of the target gene was calculated using the 2^−ΔΔCT method. The relative amplification efficiencies of the primers were tested and shown to be similar.

The uninfected A549 cells and the four groups of infected cells were added into the RLT buffer. Each group of cells was harvested and the protein concentrations were determined with a Bicinchoninic Acid (BCA) Protein Assay kit. The samples were dissolved in loading buffer, boiled for 5 min and then loaded onto 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). The protein bands were transferred onto a polyvinylidene difluoride membrane, which was blocked overnight at 4°C by Tris-buffered saline with Tween 20 (TBST) containing 5% skimmed milk. The blocked membranes were then incubated with rat anti-human BECLIN1 antibodies (1:150) for 2 h. The blocked membranes were then washed three times and incubated with horseradish peroxidase-conjugated rabbit anti-rat antibodies (1:2000) for 1 h. The bands were visualized using 3,3′-diaminobenzidine (DAB).

The cells were seeded onto 96-well plates at a density of 5×10⁴ cells per well in 100 μl medium. All the cells were maintained in a humidified incubator at 37°C with 5% CO₂. A total of 20 μl MTT (5 g/l) was added to each well and the absorbance at 570 nm was measured by a microplate reader. Subsequent to 4 h incubation, the number of surviving cells was measured. There were 5 parallel wells for each group.

Subsequent to 48-h incubation, each group of cells was digested by trypsin. The cells were further incubated at a density of 5×10⁵–1×10⁶/ml nutrient solution containing 75% cold ethanol overnight. Subsequent to centrifugation, 1 ml of the cells were fixed with 100 μl RNA enzymes (1 mg/ml) at 37°C for 30 min. Then 100 μl 10 μg/ml propidium iodide (PI) dye liquor was added in the dark. Following fixation, the cells were incubated in the dark for 30 min. The samples were filtered through a 300 mesh nylon net, then the cell apoptosis rates were detected by flow cytometry.

Each group of ~5×10⁵ cells was centrifuged at 500 × g for 5 min. The collected cells were fixed into ice cold cell lysate at a density of 50 μl/2×10⁵ cells for 10 min. The microtubes were centrifuged at 20,000 × g for 5 min, maintaining a consistent temperature of 4°C. Thereafter, the supernatants were transferred to another set of ice-cold microtubes. The 50 μl samples were pipetted into a 96-well plate, mixed and sealed with paraffin wax. Subsequent to a 2-h incubation in the dark, the fluorescence was determined by a plate reader using an excitation wavelength of 380 nm and an emission wavelength of 460 nm.

Statistical analyses were performed using SPSS 13.0 (SPSS, Chicago, IL, USA). Quantitative data are presented as the mean ± standard deviation. Comparisons among all the groups were performed with a one-way analysis of variance (ANOVA) test. Comparisons between two groups were evaluated with a t-test.

Following transfection with the siRNA virus against BECLIN1 for 48 h, the A549 cells expressed enhanced green fluorescent protein (EGFP). In total, >90% of the cells were EGFP-positive in the cell culture (Fig. 1). Subsequent to 2 weeks of G418 selection, the BECLIN1 knockdown A549 cell line was established.

Subsequent to transfection with the siRNA and scramble viruses for 48 h, BECLIN1 expression was detected using RT-PCR and western blotting (Fig. 2). The mRNA and protein expression of BECLIN1 decreased in the siRNA virus-transfected A549 cells.

Cell proliferation was detected by MTT assay in the A549 cells transfected with the siRNA or scramble viruses. Normal A549 cells were assayed as the blank control. The knockdown of BECLIN1 increased cell proliferation significantly (Fig. 3).

Apoptosis was detected by PI staining and flow cytometry in the A549 cells transfected with the siRNA or scramble viruses. Normal A549 cells were assayed as the blank control. The apoptosis index (AI) was less in the BECLIN1-knockdown A549 cells than that in the scramble virus-transfected A549 cells and blank controls (P<0.05; Fig. 4).

The activity of caspase-3 and caspase-9 decreased in the A549 cells following siRNA transfection in contrast with the activity in the normal A549 cells and the A549 cells following scramble transfection (Fig. 5). There was no difference in the activity of caspase-3 and caspase-9 between the normal A549 and scramble virus-transfected A549 cells.