Two different siRNAs encoding ephrinB3 were designed as described previously by Elbashir et al (23). Sequences of the siRNAs used in the present study are as followed: siRNA1: cggcaGAGGGTGGTTACGTGCTTTCTCGAGAAAGCACGTAACCACCCT CtgTTTTTg; siRNA2: CcgggaTCCCACCACGA TTACTACACTCGAGTGTAGTAATCGTGGTGGGAtcTTT TTg. An additional scrambled sequence was also designed as a negative control (NC) and the sequences were as follows: CcggTTCTCCGAACGTGTCACGTTTCAAGAGAACGTG ACACGTTCGGAGAATTTTTg. Replication deficient, self-inactivating lentiviral expressing vectors PGCSIL-RNAi-GFP (Shanghai Gene Kaiji, Shanghai, China) were generated as follows: In brief, the cDNAs corresponding to the two siRNAs and NC were subcloned into the lentiviral expression vector pGCSIL-RNAi-GFP (Shanghai Gene Chem, Shanghai, China). The resulting recombinant lentiviral vectors were designated as LV-siRNA 1, LV-siRNA 2 and LV-NC. To produce the lentivirus, the 293T cells were transfected with 20 μg of LV-siRNA 1, LV-siRNA 2 and LV-NC plasmid, together with 15 μg of pHelper1.0 and 10 μg of pHelper2.0 packaging plasmids, respectively (24). The culture medium was collected 48 h following transfection, then concentrated by ultracentrifugation, aliquoted and stored at −80°C until use. The titer of lentivirus was determined by hole-by-dilution titer assay (25). Four days following a single exposure of 293T cells to the lentivirus, strong green fluorescence was demonstrated in >90% of cells, indicating a high and stable transduction of the lentiviral vector system. The final titer of pFU-shRNA1, pFU-shRNA-2 and pFU-NC were 4×10⁸ TU/ml, 5×10⁸ TU/ml, 4×10⁸ TU/ml and 1×10⁹ TU/ml, respectively.

In the present study, 50 adult female Wistar rats (weighing, 250–300 g) were purchased from the Center for Experimental Animals of Jilin University (Changchun, China) and were housed at 24±1°C on a 12 h light-dark cycle and allowed free access to laboratory chow and water. All animal experiments were conducted in accordance with the National Institute of Health Guide for the Care and Use of Laboratory Animals. All animal studies were approved by the Animal Care and Use Committee at the Jilin University (Changchun, China) and were in accordance with the University’s guidelines for the care and use of laboratory animals. The study was approved by the Ethics Committee of Jilin University.

The animals were anesthetized using intraperitoneal ketamine (80 mg/kg), xylazine (10 mg/kg) and 0.9 mg/kg acepromazine. Rats were placed prone on an operating table covered with a warming blanket. A dorsal incision was made to expose T10 vertebra and a laminectomy was performed, leaving the spinal segment exposed. Following exposure of the T10 segment by laminectomy, animals received a moderate contusion using the NYU impactor that provides a contusion of 12.5 g/cm as previously described (14)

Sprague Dawley rats with SCI were randomly divided into a LV-siRNA 1, LV-siRNA 2, LV-NC and PBS group (n=10/group), virus (5 or 10 μl) was administered three days following SCI, which was flushed using 10 or 5 μl of PBS. The rats in each of the PBS, LV-NC, LV-siRNA 1 and LV-siRNA 2 groups were intrathecally delivered with PBS, LV-NC or LV-siRNA1, LV-siRNA2 plus PBS in a total volume of 15 μl, respectively. The L10–11 lumbar segment of the spinal cord was removed four weeks following administration. The protein and mRNA expression of EphB3 receptor A in the spinal cord was measured by western blot analysis and quantitative PCR (qPCR), respectively.

Total RNA was isolated from frozen spinal tissue using TRIzol reagent (Invitrogen Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s instructions. Using mRNA as a template, single-stranded cDNAs were generated by Superscript II reverse transcriptase (Invitrogen Life Technologies) according to the manufacturer’s instructions. The amplification mixture (20 μl) contained 4 μl of cDNA, 5 μl of primers and 11 μl of Ex Taq SYBER Premix (Takara Bio, Inc., Shiga, Japan). The amplification was performed at 95°C for 2 min, followed by 40 cycles of 95°C for 30 sec and 60°C for 1 min. All qPCR were performed in triplicate to ensure quantitative accuracy. PCR was performed on the ABI 7500HT instrument and data were analyzed based on the 2^−ΔΔCT method with normalization software. Primers utilized for the qPCR were as follows: EphB3: sense, 5′-ACTCAGCCTGGAGCCTGTCTAC-3′; anti-sense, 5′-CGATCTGAGGGTAAAGCACGTA-3′. GAPDH: sense, 5′-TGGAGAAACCTGCCAAGTATGA-3′ and anti-sense, 5′-TGGAAGAATGGGAGTTGCTGT-3′. The expression of interest genes was determined by normalization of the threshold cycle (Ct) of these genes to that of the control GAPDH.

Lumbar spinal enlargements (L10–11) were removed and homogenized in SDS sample buffer containing a protease inhibitor cocktail (Sigma, St. Louis, MO, USA). Protein samples were separated on an 8% SDS-polyacrylamide gel and transferred onto nitrocellulose membranes (Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA). Following blockade in TBS containing 5% skimmed milk and 0.1% Tween-20 for 2 h at room temperature, they were then processed for immunostaining with either an antiserum against a monoclonal antibody against rat β-actin (1:5,000; Sigma), a polyclonal custom-made antibody against GAP43 (1:1,000; Invitrogen Life Technologies) or a polyclonal antibody against rat ephrinB3 (1:5,000; Serotec, Oxford, UK) at 4°C overnight. The bound antibodies were visualized with anti-rabbit, anti-mouse immunoglobulin G (IgG; 1:10,000) or anti-sheep (1:10,000) secondary antibodies conjugated with horseradish peroxidase (Sigma) following incubation for 2 h at room temperature. The antigen-antibody complexes were detected by ECL (Amersham Biosciences, Pittsburgh, PA, USA) according to the manufacturer’s instructions.

Locomotor activity was evaluated over a period of 5 min by an open-field walking test. One animal at a time was allowed to move freely inside a circular plastic tray (90 cm diameter × 24 cm wall height).

Two independent examiners observed the hind limb movements of the rat and scored the locomotor function according to the Basso-Beattie-Bresnahan (BBB) scale (26) that ranges from 0 (paralysis) to 21 points (normal gait). The final score for each animal was the mean value of the two examiners. During the open field activity, the animals were also video monitored with a digital camera. Functional tests were performed prior to the injury and transplantation, and weekly for eight weeks following siRNA transplantation.

The motor function of the hindlimbs was also examined utilizing the walking-beam test. The apparatus consisted of a 3.4 cm-wide and 140 cm-long wooden rectangular beam. A goal box was placed at one end. The central 1 m of the beam was used to evaluate the walking distance. The latency and trajectory to traverse the beam were recorded with a video-tracking system for a maximum of 1 min. Following pretraining, two trials were conducted each day for three consecutive days. The animals were examined prior to the surgery and every week from the second week following the injection of LV-siRNA1, LV-siRNA2, LV-NC or PBS. A 0 to 7-point scale modified from Goldstein (27) was used to evaluate the locomotor function.

To analyze the volume of the spared white and gray matter, and the extent of axonal sprouting, animals with SCI (n=7) were sacrificed four weeks following siRNA-ephrinB3 transplantation. For perfusion, the animals were deeply anesthetized with ketamine (100 mg/kg) and xylazine (20 mg/kg). Their chests were opened and transcardial perfusion was washed with PBS until the liver tissue was clean, followed by perfusion with a 4% paraformaldehyde (PFA) solution in PBS. A 2 cm long segment of the spinal cord was dissected between 1 cm cranial and 1 cm caudal to the injury epicenter. Serial cross sections, 5 μm thick, were incised using a K400 microtome (MICROM International GmbH, Walldorf, Germany) following paraffin embedding. Sections were also dewaxed in xylene, rehydrated in descending alcohols and blocked for endogenous peroxidase and avidin/biotin activities. Following blocking with 3% BSA in 0.01 M PBS (pH 7.2), the sections were incubated with mouse monoclonal antibody against GAP43 (Santa Cruz Biotechnology, Inc.) at a dilution of 1:1,000 overnight at 4°C. Then, it was washed in 0.01 M PBS (pH 7.2) for 5 min. The sections were then incubated with biotin-labeled rabbit anti-mouse antibody (1:100; ZSGB-BIO, Beijing, China) for 2 h. Following washing with PBS three times, immunostaining was visualized using a streptavidin-peroxidase reaction system and then developed with diaminobenzidine (DAB)-H₂O₂ (Wuhan Boster Biological Technology, Ltd., Wuhan, China). High-magnification images of transverse sections, separated by a 1 mm distance in all of the animal groups stained for GAP43, were obtained and GAP43-positive fibers were manually counted.

All data are expressed as the mean ± SEM. Statistical analysis between two samples was performed using Student’s t-test. Statistical comparison of more than two groups was performed using one-way ANOVA followed by a Tukey post hoc test. The significance of any differences in behavioral data of different experimental groups was assessed using two-way ANOVA. P<0.05 was considered to indicate a statistically significant difference.

qPCR was performed 28 days following injection to evaluate the level of EphB3 mRNA expression. The results demonstrated there was no significant inhibition of EphB3 mRNA expression in the LV-NC group, and there were no significant differences between the LV-NC group and control group (PBS group). By contrast, ephrinB3 expression in the siRNA group was significantly decreased compared with the LV group and control group (PBS group) following injection. The effect of siRNA treatment on ephrinB3 protein expression was assessed by western blot analysis. As revealed in Fig. 1, there was no significant inhibition of EphB3 protein expression in the LV-NC group (P>0.05), while the band density decreased markedly in the LV-siRNA-1, LV-siRNA-2 as compared with the LV-NC (P<0.01) group. These results demonstrated that siRNA targeting ephrinB3 significantly reduced ephrinB3 protein expression levels in rats in vivo (P<0.01).

The BBB locomotor grading scale was used to assess the effects of EphB3-siRNA on the locomotive behavior of injured rats. The two-way ANOVA followed by Bonferroni post hoc analysis demonstrated highly significant differences in locomotor behavior between LV-siRNA-1, LV-siRNA-2 and the LV-NC groups (P<0.01; Fig. 2). The data transformation and analysis revealed improved BBB scores in the LV-siRNA-1 and LV-siRNA-2 compared with the LV-NC group (P<0.01) (Fig. 2), which revealed that knockout ephrinB3 may increase BBB scores to a certain extent.

The ability to traverse a beam with a flat surface was examined weekly. Rats with SCI, injected with PBS, were not able to transverse the beam at all, as no signs of weight support and/or stepping were observed. However, following siRNA ephrinB3 treatment, the rats began to maintain their body weight on the beam for 60 sec and a number of them were able to traverse the full length of the beam. A statistically significant difference appeared at seven weeks following SCI between the scores of the control and siRNA groups (P<0.01). In addition, no significant difference was noted between the LV-NC and control (PBS) groups (Fig. 3).

Axonal sprouting in the lesion was expressed as the number of GAP43 + fibers (Fig. 4). Staining for GAP43 was more intense in the cross-sections of the spinal cord tissue of LV-siRNA1 and LV-siRNA2 groups than in the sections from control and LV-NC groups (Fig. 4A). The number of GAP43 + axonal fibers per section was significantly increased in LV-siRNA1 and LV-siRNA2 groups compared with the control group (Fig. 4B). Furthermore, the GAP43 expression was also measured by western blot analysis, and the results revealed that the GAP43 protein expression level was higher in the LV-siRNA1 and LV-siRNA2 groups than that of the control and LV-NC groups (Fig. 4C).