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<article xml:lang="en" article-type="research-article" xmlns:xlink="http://www.w3.org/1999/xlink">
<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">OR</journal-id>
<journal-title-group>
<journal-title>Oncology Reports</journal-title></journal-title-group>
<issn pub-type="ppub">1021-335X</issn>
<issn pub-type="epub">1791-2431</issn>
<publisher>
<publisher-name>D.A. Spandidos</publisher-name></publisher></journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3892/or.2015.4185</article-id>
<article-id pub-id-type="publisher-id">or-34-04-1733</article-id>
<article-categories>
<subj-group>
<subject>Articles</subject></subj-group></article-categories>
<title-group>
<article-title>Dual effects of human adipose tissue-derived mesenchymal stem cells in human lung adenocarcinoma A549 xenografts and colorectal adenocarcinoma HT-29 xenografts in mice</article-title></title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>RHYU</surname><given-names>JUNG JOO</given-names></name><xref rid="af1-or-34-04-1733" ref-type="aff">1</xref><xref rid="af2-or-34-04-1733" ref-type="aff">2</xref><xref rid="fn1-or-34-04-1733" ref-type="author-notes">&#x0002A;</xref></contrib>
<contrib contrib-type="author">
<name><surname>YUN</surname><given-names>JUN-WON</given-names></name><xref rid="af2-or-34-04-1733" ref-type="aff">2</xref><xref rid="fn1-or-34-04-1733" ref-type="author-notes">&#x0002A;</xref></contrib>
<contrib contrib-type="author">
<name><surname>KWON</surname><given-names>EUNA</given-names></name><xref rid="af2-or-34-04-1733" ref-type="aff">2</xref></contrib>
<contrib contrib-type="author">
<name><surname>CHE</surname><given-names>JEONG-HWAN</given-names></name><xref rid="af3-or-34-04-1733" ref-type="aff">3</xref></contrib>
<contrib contrib-type="author">
<name><surname>KANG</surname><given-names>BYEONG-CHEOL</given-names></name><xref rid="af1-or-34-04-1733" ref-type="aff">1</xref><xref rid="af2-or-34-04-1733" ref-type="aff">2</xref><xref rid="af3-or-34-04-1733" ref-type="aff">3</xref><xref rid="af4-or-34-04-1733" ref-type="aff">4</xref><xref ref-type="corresp" rid="c1-or-34-04-1733"/></contrib></contrib-group>
<aff id="af1-or-34-04-1733">
<label>1</label>Graduate School of Translational Medicine, Seoul National University College of Medicine, Seoul, Republic of Korea</aff>
<aff id="af2-or-34-04-1733">
<label>2</label>Department of Experimental Animal Research, Biomedical Research Institute, Seoul National University Hospital, Seoul, Republic of Korea</aff>
<aff id="af3-or-34-04-1733">
<label>3</label>Biomedical Center for Animal Resource and Development, N-BIO, Seoul National University, Seoul, Republic of Korea</aff>
<aff id="af4-or-34-04-1733">
<label>4</label>Designed Animal and Transplantation Research Institute, Institute of GreenBio Science Technology, Seoul National University, Pyeongchang-gun, Gangwon-do, Republic of Korea</aff>
<author-notes>
<corresp id="c1-or-34-04-1733">Correspondence to: Professor Byeong-Cheol Kang, Graduate School of Translational Medicine, Seoul National University College of Medicine, 101 Daehak-ro, Jongno-gu, Seoul 110-744, Republic of Korea, E-mail: <email>bckang@snu.ac.kr</email></corresp><fn id="fn1-or-34-04-1733">
<label>&#x0002A;</label>
<p>Contributed equally</p></fn></author-notes>
<pub-date pub-type="ppub">
<month>10</month>
<year>2015</year></pub-date>
<pub-date pub-type="epub">
<day>07</day>
<month>08</month>
<year>2015</year></pub-date>
<volume>34</volume>
<issue>4</issue>
<fpage>1733</fpage>
<lpage>1744</lpage>
<history>
<date date-type="received">
<day>04</day>
<month>03</month>
<year>2015</year></date>
<date date-type="accepted">
<day>18</day>
<month>05</month>
<year>2015</year></date></history>
<permissions>
<copyright-statement>Copyright: &#x000A9; Rhyu.</copyright-statement>
<copyright-year>2015</copyright-year>
<license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/4.0">
<license-p>This is an open-access article licensed under a Creative Commons Attribution-NonCommercial 4.0 Unported License. The article may be redistributed, reproduced, and reused for non-commercial purposes, provided the original source is properly cited.</license-p></license></permissions>
<abstract>
<p>Human adipose tissue-derived mesenchymal stem cells (hATMSCs) have great potential as a therapy for various diseases. However, emerging evidence shows that there are conflicting results concerning effects of hATMSCs on tumor progression. Our objective was to determine whether and how hATMSCs modulate tumor growth. After cancer cell lines were subcutaneously inoculated into BALB/c-nude and hairless severe combined immunodeficient mice, hATMSCs were intratumorally injected into the mice. The growth of the A549 tumors was inhibited by hATMSCs, yet that of the HT-29 tumors was significantly promoted by hATMSCs in the <italic>in vivo</italic> xenograft models. <italic>In vitro</italic> study using a co-culture system of cancer cells and hATMSCs was consistent with the <italic>in vivo</italic> experiments. To reveal the molecular events induced by hATMSCs in the xenograft models, global gene expression profiles of the A549 and HT-29 tumors in the absence or presence of hATMSCs were determined. Significant numbers of genes involved in biological processes were altered in the hATMSC-treated A549 tumors, whereas no biological process was regulated by treatment with hATMSCs in the HT-29 tumors, reflecting the different effects of hATMSCs in the different types of cancer. Notably, <italic>histone cluster 1, H2aj</italic> and <italic>neuropeptide Y receptor Y4</italic> were found to be expressed in direct or inverse proportion to tumor size in both xenograft models. In addition, nuclear factor &#x003BA;B (NF-&#x003BA;B) p65 was differentially phosphorylated by the hATMSCs dependent on the source of the cancer cells. In conclusion, the identified gene profiling and NF-&#x003BA;B signaling provide molecular evidence to explain the conflicting findings in tumor-MSC studies, although further study is needed to confirm these findings using various types of cancer.</p></abstract>
<kwd-group>
<kwd>human adipose tissue-derived mesenchymal stem cells</kwd>
<kwd>tumor</kwd>
<kwd>A549 lung adenocarcinoma cells</kwd>
<kwd>HT-29 colorectal adenocarcinoma cells</kwd>
<kwd>NF-&#x003BA;B</kwd>
<kwd>microarray</kwd></kwd-group></article-meta></front>
<body>
<sec sec-type="intro">
<title>Introduction</title>
<p>Mesenchymal stem cells (MSCs) are defined as cells possessing the ability of self-renewal, proliferation and differentiation into multiple lineages, including chondrocytes, osteoblasts and adipocytes (<xref rid="b1-or-34-04-1733" ref-type="bibr">1</xref>). MSCs are known to have homing properties and can repair injured tissues; thus, MSCs demonstrate potential as therapy for organ defects, regeneration or certain other conditions, including bone defects (<xref rid="b2-or-34-04-1733" ref-type="bibr">2</xref>,<xref rid="b3-or-34-04-1733" ref-type="bibr">3</xref>), hair loss (<xref rid="b4-or-34-04-1733" ref-type="bibr">4</xref>), liver fibrosis (<xref rid="b5-or-34-04-1733" ref-type="bibr">5</xref>), pancreatic islet transplantation, immunomodulation (<xref rid="b6-or-34-04-1733" ref-type="bibr">6</xref>) and neuronal regeneration (<xref rid="b7-or-34-04-1733" ref-type="bibr">7</xref>). MSCs can be found in various tissues, including bone marrow, umbilical cord blood, placenta and fat (<xref rid="b8-or-34-04-1733" ref-type="bibr">8</xref>). Among these sites, adipose tissue is accessible and abundant for the isolation of adult stem cells. Therefore, human adipose tissue-derived MSCs (hATMSCs) obtained by relatively less invasive procedures are an attractive source for cell therapy.</p>
<p>Our previous study indicated that systemic transplantation of hATMSCs did not induce tumor development (<xref rid="b9-or-34-04-1733" ref-type="bibr">9</xref>). MacIsaac <italic>et al</italic> (<xref rid="b10-or-34-04-1733" ref-type="bibr">10</xref>) also showed that no malignancies were detected in normal mice treated with hATMSCs. However, in tumor models, MSCs have been reported to play a role in the process of carcinogenesis, tumor growth and metastasis, although numerous studies have reported contradicting results; some investigators found that MSCs promote tumor growth and others report that MSCs inhibit tumor growth (<xref rid="b11-or-34-04-1733" ref-type="bibr">11</xref>). Maestroni <italic>et al</italic> (<xref rid="b12-or-34-04-1733" ref-type="bibr">12</xref>) reported that mouse bone marrow-derived mesenchymal stem cells (BM-MSCs) inhibited the proliferation and growth of Lewis lung carcinoma and B16 melanoma. It was also reported that hBM-MSCs showed a tumor-suppressive effect in an experimental model of Kaposi's sarcoma (<xref rid="b13-or-34-04-1733" ref-type="bibr">13</xref>). BM-MSCs also exhibited an inhibitory effect on A549 tumor cells both <italic>in vivo</italic> and <italic>in vitro</italic> experiments (<xref rid="b14-or-34-04-1733" ref-type="bibr">14</xref>). In contrast, a promoting effect of MSCs on tumor growth was observed in other studies. Zhu <italic>et al</italic> (<xref rid="b15-or-34-04-1733" ref-type="bibr">15</xref>) subcutaneously injected hBM-MSCs along with colon cancer cells, and promotion of angiogenesis and tumor growth were noted. Xu <italic>et al</italic> (<xref rid="b16-or-34-04-1733" ref-type="bibr">16</xref>) showed that hBM-MSCs promoted the growth and metastasis of osteosarcoma. The tumor-promoting effect of BM-MSCs was also demonstrated by Tsai <italic>et al</italic> (<xref rid="b17-or-34-04-1733" ref-type="bibr">17</xref>) in HT-29 cancer cells.</p>
<p>Some mechanisms of MSC-related tumor supporting effects have been reported, which include vascular (<xref rid="b18-or-34-04-1733" ref-type="bibr">18</xref>) and tumor stromal support (<xref rid="b19-or-34-04-1733" ref-type="bibr">19</xref>), immunosuppressive effects (<xref rid="b20-or-34-04-1733" ref-type="bibr">20</xref>) and metastatic support (<xref rid="b21-or-34-04-1733" ref-type="bibr">21</xref>). On the other hand, the tumor inhibitory mechanisms of MSCs could be due to cell cycle arrest (<xref rid="b22-or-34-04-1733" ref-type="bibr">22</xref>), angiogenesis inhibition (<xref rid="b23-or-34-04-1733" ref-type="bibr">23</xref>) and regulation of certain soluble factors, such as Wnt inhibitor, Dickkopf-related protein-1 (DKK-1), that may block tumor-related cell signaling pathways (<xref rid="b24-or-34-04-1733" ref-type="bibr">24</xref>). Despite these explanations regarding the action of MSCs, the tumor modulation mechanisms of MSCs are extremely complicated and difficult to demonstrate. Thus, in order for the clinical use of MSCs as a novel cell therapy for various conditions, it is critical to understand the interactions between tumors and MSCs. In the present study, we investigated the tumor-modulatory effects of hATMSCs in several types of human cancer cells to clarify the roles of hATMSCs on human cancers and to determine the underlying mechanisms.</p></sec>
<sec sec-type="methods">
<title>Materials and methods</title>
<sec>
<title>Tumor cell lines</title>
<p>Human malignant melanoma cell line A-375, human lung adenocarcinoma cell line A549 and human colorectal adenocarcinoma cell line HT-29 were purchased from ATCC (Manassas, VA, USA). Human epidermoid carcinoma cell line A-431, human gastric carcinoma cell line NCI-N87 and human pancreatic adenocarcinoma cell line Capan-1 were obtained from the Korean Cell Line Bank (Seoul, Korea). The cell lines were cultured in RPMI-1640 supplemented with 10% fetal bovine serum (FBS) and 0.03% antibiotic-antimycotic (all from Gibco, Grand Island, NY, USA) at 37&#x000B0;C in a 5% CO<sub>2</sub> humidified chamber.</p></sec>
<sec>
<title>Isolation and characterization of hATMSCs</title>
<p>hATMSCs were prepared from surplus banked stem cells under good manufacturing practice conditions (RNL Bio, Seoul, Korea) and used as anonymized materials. In brief, human abdominal subcutaneous fat tissue was obtained by simple liposuction following informed consent from donors, digested with collagenase I (1 mg/ml), and filtered through a 100-<italic>&#x003BC;</italic>m nylon sieve to remove cellular debris and centrifuged at 470 g for 5 min. The pellet was resuspended in RCME cell attachment medium (RNL Bio) containing 10% FBS and cultured at 37&#x000B0;C. After 24 h, the cell medium was changed to RKCM cell growth medium (RNL Bio) containing 5% FBS. When the cells reached 80&#x02013;90% confluency, they were subcultured and expanded in RKCM medium until passage 3. The immunophenotypes of the hATMSCs were analyzed using flow cytometric analysis. Trypsinized hATMSCs were suspended &#x0005B;1&#x000D7;10<sup>6</sup> hATMSCs/25 <italic>&#x003BC;</italic>l of phosphate-buffered saline (PBS)&#x0005D; and stained with FITC-conjugated CD31, CD34 and CD45 antibodies and PE-conjugated CD73 and CD90 antibodies (BD Pharmingen, San Diego, CA, USA).</p></sec>
<sec>
<title>In vivo tumor xenograft models</title>
<p>Severe combined immunodeficient (SCID) and nude mice can be used as human tumor xenograft models (<xref rid="b25-or-34-04-1733" ref-type="bibr">25</xref>). Six-week old female BALB/c-nude mice (Orient Bio Inc., Seongnam, Korea) and hairless SCID mice (Charles River, Wilmington, MA, USA) were housed in an environmentally controlled room (22&#x000B1;2&#x000B0;C, 40&#x02013;60% humidity and a 12-h light cycle). The present study was approved by the Institutional Review Board (IRB) and the Institutional Animal Care and Use Committee (IACUC) of the Biomedical Research Institute at Seoul National University Hospital. Cancer cells (5&#x000D7;10<sup>6</sup>) were subcutaneously inoculated into the back of mice. The injection was made through the subcutaneous layer of the cervicodorsal part of the animals. When the tumor volume reached close to 100 mm<sup>3</sup>, the mice were intratumorally injected with 1&#x000D7;10<sup>5</sup> hATMSCs suspended in PBS or PBS once a week for 8 weeks (n=3&#x02013;6/group). The tumor size was measured twice a week using a caliper (Mitutoyo, Tokyo, Japan), and the tumor volumes were calculated as &#x003C0;/6 &#x000D7; (volume &#x000D7; width &#x000D7; height) according to a previously described method (<xref rid="b26-or-34-04-1733" ref-type="bibr">26</xref>). After sacrifice at 8 weeks, the tumor masses were removed, weighed and fixed in 10% neutral buffered formaldehyde solution for histological analysis or preserved at &#x02212;70&#x000B0;C.</p></sec>
<sec>
<title>In vitro co-culture and trypan blue exclusion assay</title>
<p>A549 and HT-29 cancer cells (1&#x000D7;10<sup>5</sup>) were co-cultured with hATMSCs in RPMI-1640 medium with 10% FBS in 6-well plates for 72 h. Indirect co-culture was conducted using Transwell inserts (0.4-<italic>&#x003BC;</italic>m pore size, polycarbonate membrane; SPL, Pocheon, Korea) in 6-well plates to prevent cell-to-cell contact. All of the experiments were conducted in triplicate. Total cell number was assessed by a trypan blue exclusion assay using a hemocytometer under a microscope.</p></sec>
<sec>
<title>Western blot analysis</title>
<p>The proteins were extracted using RIPA lysis buffer (Millipore, Bedford, MA, USA) containing 0.1% phosphatase inhibitor cocktail (Sigma-Aldrich, St. Louis, MO, USA) and protease inhibitor (Roche, Indianapolis, IN, USA). The protein concentrations were determined using a BCA protein assay kit (Pierce Biotechnology, Rockford, IL, USA). Protein samples were loaded for immunoblotting using antibodies against phosphorylated nuclear factor &#x003BA;B (NF-&#x003BA;B) p65, &#x003B2;-actin (Cell Signaling Technology, Beverly, MA, USA), p-JAK3, p-STAT3 and &#x003B2;-catenin (Santa Cruz Biotechnology, Santa Cruz, CA, USA). Densitometry of the target bands was analyzed using ImageJ &#x0005B;National Center for Biotechnology Information (NCBI)&#x0005D;.</p></sec>
<sec>
<title>RNA isolation and microarray analysis</title>
<p>Total RNA from the tumors was isolated using Ambion mirVana miRNA Isolation kit (Ambion, Austin, TX, USA). RNA quality was assessed using an Agilent 2100 Bioanalyzer using the RNA 6000 Nano Chip (Agilent Technologies, Amstelveen, The Netherlands), and the quantity was determined by the ND-1000 spectrophotometer (Thermo Scientific, Wilmington, DE, USA). Affymetrix GeneChip<sup>&#x000AE;</sup> Human Gene 2.0 ST Array (Affymetrix, Santa Clara, CA, USA) was used to analyze differential gene expression profiles as previously described (<xref rid="b27-or-34-04-1733" ref-type="bibr">27</xref>). In order to determine whether genes were differentially expressed among the groups, the genes that showed &gt;1.5-fold difference between the average signal values of the control and test groups were selected. Additionally, genes with a p-value &lt;0.05 were extracted by Student's t-test (two-tailed, unpaired). After significant genes were identified, the web-based tool Database for Annotation, Visualization and Integrated Discovery (DAVID) was used to perform the biological interpretation of the differentially expressed genes. The genes were classified based on the information of gene function in Gene Ontology (GO) (<ext-link xlink:href="http://david.abc.ncifcrf.gov/home.jsp" ext-link-type="uri">http://david.abc.ncifcrf.gov/home.jsp</ext-link>).</p></sec>
<sec>
<title>Flow cytometric analysis</title>
<p>Cancer cells were analyzed by a flow cytometer (FACSCalibur; Becton-Dickinson, San Jose, CA, USA) to assess levels of proliferation, apoptosis and NF-&#x003BA;B expression. Apoptosis and proliferation were evaluated using Annexin V-FITC Early Apoptosis Detection kit (Cell Signaling Technology) and BrdU Flow kit (BD Pharmingen), respectively, according to the manufacturer's instructions. Harvested tumor cells were centrifuged, resuspended in PBS and fixed in 2&#x02013;4% formaldehyde. Phospho-NF-&#x003BA;B p65-Alexa Fluor 647 conjugate (Cell Signaling Technology) antibody was used for NF-&#x003BA;B analysis.</p></sec>
<sec>
<title>Statistical analysis</title>
<p>Statistical analysis of the results was performed using one-way ANOVA (SPSS, Inc., Chicago, IL, USA). p-values of &lt;0.05 were considered to indicate statistically significant results. If the variance was significant, the data were analyzed by the multiple comparison procedure of Dunnett's test.</p></sec></sec>
<sec sec-type="results">
<title>Results</title>
<sec>
<title>Effects of the hATMSCs on the growth of various types of tumors in vivo xenograft models</title>
<p>For immunophenotypic characterization of the hATMSCs, surface marker expression was examined by flow cytometry. The hATMSCs expressed high levels of MSC markers CD73 and CD90, whereas the hATMSCs were negative for cell adhesion molecule marker CD31 and hematopoietic stem cell markers CD34 and CD45 (<xref rid="f1-or-34-04-1733" ref-type="fig">Fig. 1A</xref>).</p>
<p>In Korea, the stomach, colon and lung have been reported to be the five leading primary sites of cancer both in males and females in 2013 (<xref rid="b28-or-34-04-1733" ref-type="bibr">28</xref>). In addition to xenograft models for these cancers, three well-known xenografts, A-375 melanoma, skin squamous cell carcinoma A-431 and Capan-1 pancreatic xenografts (<xref rid="b29-or-34-04-1733" ref-type="bibr">29</xref>&#x02013;<xref rid="b31-or-34-04-1733" ref-type="bibr">31</xref>), were used in order to investigate the dual effects of the hATMSCs on tumor growth. The tumor size was measured for 8 weeks after the first subcutaneous hATMSC injection in the BALB/c-nude mice subcutaneously inoculated with the cancer cells. The rates of growth of the A431, Capan-1 and A549 tumors were reduced in the hATMSC-injected groups compared with the respective control groups, although the differences did not reach statistical significance (<xref rid="f1-or-34-04-1733" ref-type="fig">Fig. 1B</xref>). In contrast, NCI-N87 and A375 tumors showed the tendency toward increased volume in the hATMSC-injected groups in comparison to the respective control groups. Particularly, the tumor weight of the HT-29 tumors in the hATMSC group was significantly greater than that in the control group. The differences in tumor weights between the hATMSC and the respective control groups showed consistent patterns with the changes in tumor volume (<xref rid="f1-or-34-04-1733" ref-type="fig">Fig. 1C and D</xref>).</p>
<p>Based on the changes in mean volumes and weights by the hATMSC injection in the BALB/c-nude mice, we selected the A549 and the HT-29 tumors for additional <italic>in vivo</italic> experiments using hairless SCID mice, and confirmed similar dual effects of the hATMSCs in these two types of tumors. The volume and weight of the A549 tumors were significantly reduced in the hATMSC group compared with the parameters in the control group, whereas the tumor volume and weight of the hATMSC-treated HT-29 tumors were significantly greater than the control group (<xref rid="f2-or-34-04-1733" ref-type="fig">Fig. 2</xref>).</p></sec>
<sec>
<title>Co-culture effect of the hATMSCs on the viability of cancer cell lines A549 and HT-29 in vitro</title>
<p>Tian <italic>et al</italic> (<xref rid="b8-or-34-04-1733" ref-type="bibr">8</xref>) reported opposite effects of MSCs <italic>in vivo</italic> and <italic>in vitro</italic>; human BM-MSCs exerted a tumor inhibitory effect <italic>in vitro</italic>, yet surprisingly had a promoting effect on tumor growth <italic>in vivo</italic>. To confirm the effects of the hATMSCs on tumor growth <italic>in vivo</italic>, the A549 and HT-29 cells were co-cultured with the hATMSCs at different ratios of 10:0.5, 10:1 and 10:2 (<xref rid="f3-or-34-04-1733" ref-type="fig">Fig. 3A</xref>). The direct co-culture of the A549 cells with the hATMSCs at the ratios of 10:1 and 10:2 attenuated the proliferation rates of the cells by 9.78 and 19.82%, respectively, compared to the control group (10:0), whereas the direct co-culture of the HT-29 cells with the hATMSCs at the ratios of 10:1 and 10:2 increased the proliferation rates of the cells by 17.22 and 29.78%, respectively, compared to the control group (10:0). This probably resulted from the proliferation rates of the cancer cells changed by the hATMSCs. However, further evidence that excluded the confounding effects associated with changes in the proliferation rates of the hATMSCs by the cancer cells was needed. Thus, indirect co-culture of the cancer cells with the hATMSCs using cell inserts was conducted in order to prevent cell-to-cell contact. The same trends were observed in the indirect co-culture. The proliferation rates of the A549 cells were reduced by 9.72 and 18.57%, respectively, whereas those of the HT-29 cells were increased by 19.90 and 25.79%, respectively, compared to the control group (10:0).</p></sec>
<sec>
<title>Co-culture effect of the hATMSCs on the proliferation and apoptosis of cancer cells</title>
<p>The proliferation of the cancer cells indirectly co-cultured with the hATMSCs was measured by BrdU staining and flow cytometry. The percentage of BrdU-positive A549 cells was reduced by the hATMSC co-culture by 34 and 23% at the ratios of 10:1 and 10:2, respectively, whereas there was a significant induction of the percentage of BrdU-positive HT-29 cells co-cultured with the hATMSCs at the ratios of 10:2 (<xref rid="f3-or-34-04-1733" ref-type="fig">Fig. 3B</xref>). The apoptotic rates of the cancer cells co-cultured with the hATMSCs were analyzed by Annexin V/PI double staining and flow cytometry. While the percentage of live A549 cells was significantly diminished by co-culture with the hATMSCs, the percentage of apoptotic A549 cells was elevated by 40, 85 and 95% at the ratios of 10:0.5, 10:1 and 10:2, respectively (<xref rid="f3-or-34-04-1733" ref-type="fig">Fig. 3C</xref>). However, the hATMSCs had opposite effects on the HT-29 cells; there was an increase in live HT-29 cells and a decrease in apoptotic HT-29 cells of 23 and 26% at the ratios of 10:1 and 10:2, respectively. Collectively, the hATMSCs inhibited the proliferation, yet elevated the apoptosis in the A549 cancer cells, whereas it promoted the proliferation and reduced apoptosis in the HT-29 cancer cells.</p></sec>
<sec>
<title>Global differences in gene expression in the xenograft tumors in the presence or absence of the hATMSCs</title>
<p>In the microarray experiment with the A549 tumors of the hairless SCID mice, 4,022 probe sets were used to identify significant differences between the hATMSC and the control group in regards to expression levels of genes (fold-change &gt;1.5) (<xref rid="f4-or-34-04-1733" ref-type="fig">Fig. 4A and B</xref>). Particularly, we found that the expression levels of 1,725 probes were increased and those of 2,297 probes were decreased in the hATMSC group. In contrast, in the microarray experiment with the HT-29 tumors of the hairless SCID mice, 164 probes were found expressed more highly in the hATMSC group, whereas 135 probes were found to be more lowly expressed in the hATMSC group. Based on more stringent statistical criteria (fold-change &gt;1.5 and p&lt;0.05), 568 genes were expressed at a higher level and 1,191 genes were expressed at a lower level in the hATMSC group compared with the control group in the A549 tumors (<xref rid="tI-or-34-04-1733" ref-type="table">Table I</xref>). In contrast, 9 genes were expressed at a higher level and 14 genes were expressed at a lower level in the hATMSC group when compared with the control group in the HT-29 tumors (<xref rid="tII-or-34-04-1733" ref-type="table">Table II</xref>).</p>
<p>Among the genes differentially expressed in the xenograft tumors after the hATMSC injection, histone cluster 1, H2aj (<italic>HIST1H2AJ</italic>) was expressed in direct proportion to the xenograft tumor size. In other words, it was expressed at lower level in the A549 tumors and was expressed at a higher level in the HT-29 tumors after the hATMSC injection in comparison to the respective control groups. In addition, neuropeptide Y receptor Y4 (<italic>NPY4R</italic>) and <italic>LOC100505817</italic> were expressed in inverse proportion to the xenograft tumor size. They were expressed at a higher level in the A549 tumors and were expressed at a lower level in the HT-29 tumors after the hATMSC injection in comparison to the respective control groups (<xref rid="f4-or-34-04-1733" ref-type="fig">Fig. 4A and C</xref>).</p></sec>
<sec>
<title>Functional classification of genes showing differential expression in the hATMSC-treated xenograft tumors</title>
<p>In order to identify the biological function of the genes differentially expressed following the hATMSC injection in the A549 and HT-29 tumor models using hairless SCID mice, GO analysis was performed. The statistically significant categories of GO terms &#x0005B;p&lt;0.01; false discovery rate (FDR) &lt;0.05&#x0005D; are shown in <xref rid="tIII-or-34-04-1733" ref-type="table">Table III</xref>. No enriched GO term was altered following treatment with the hATMSCs in the HT-29 tumors, whereas the genes involved in biological processes, such as 'Regulation of growth' and 'Regulation of cell growth' were upregulated in the hATMSC-treated A549 tumors. The genes involved in biological processes, such as 'Nucleosome assembly', 'Nucleosome organization', 'Protein-DNA complex assembly', 'Chromatin assembly or disassembly', 'Cell-cell adhesion' and 'Regulation of transcription (DNA-dependent)' were downregulated in the hATMSC-treated A549 tumors.</p></sec>
<sec>
<title>Effects of the hATMSCs on the phosphorylation of NF-&#x003BA;B p65 in the A549 and HT-29 tumors in vivo and in vitro</title>
<p>The proteins extracted from the xenograft tumor masses of the hairless SCID mice were analyzed by western blot analysis to investigate whether there is a relationship between certain cell signaling pathways and the hATMSC-associated modulation of tumor growth. Among several proteins related to cell signaling pathways, the expression level of phosphorylated NF-&#x003BA;B p65 was reduced by 31% in the hATMSC-injected A549 tumor, whereas it was increased by 77% in the hATMSC-injected HT-29 tumors (<xref rid="f5-or-34-04-1733" ref-type="fig">Fig. 5A and B</xref>). The levels of other cell signaling-related proteins, such as p-JAK3 and p-STAT3, were not affected by the hATMSCs in the A549 and HT-29 tumors, and the &#x003B2;-catenin protein level was elevated by the hATMSCs in the HT-29 tumors, yet not affected in the A549 tumors, providing a possible correlation between the NF-&#x003BA;B pathway and hATMSC-related tumor modulation, at least in the A549 and the HT-29 tumors.</p>
<p>Changes in phosphorylated NF-&#x003BA;B p65 in the tumor masses <italic>in vivo</italic> were confirmed using flow cytometric analysis in the cancer cells indirectly co-cultured with the hATMSCs, which revealed significant reductions in phosphorylated NF-&#x003BA;B p65 by 12, 25 and 32% in the co-culture of the A549 cancer cells with the hATMSCs at the ratios of 10:0.5, 10:1 and 10:2, respectively, compared with the control (10:0) (<xref rid="f5-or-34-04-1733" ref-type="fig">Fig. 5C</xref>). However, there was an inverse effect in the HT-29 cancer cells, showing a profound increase in phosphorylated NF-&#x003BA;B p65 by 15% in the co-culture of HT-29 cancer cells with the hATMSCs at the ratio of 10:2.</p></sec></sec>
<sec sec-type="discussion">
<title>Discussion</title>
<p>In the present study, we found conflicting results concerning the effects of the hATMSCs on tumor growth, particularly in the A549 and HT-29 tumors which were suppressed and supported, respectively, by the hATMSCs. It is possible that the dual effect of MSCs can be dependent on tumor type, at least partially, although these two cell lines do not represent the types of cancer that they are derived from. Thus, further analysis is needed to verify the actual factors in different microenvironment induced by different cancer cells rather than attempting to propose the type of tumor as the reason.</p>
<p>A recent study showed that direct cell-to-cell interaction between cancer cells and MSCs is responsible for the effects of MSCs on tumor growth (<xref rid="b32-or-34-04-1733" ref-type="bibr">32</xref>). Although we also observed this result when hATMSCs were directly injected at the tumor site in the xenograft tumor models <italic>in vivo</italic>, our hypothesis is that this effect of hATMSCs on tumor growth could be indirect according to the results of previous studies (<xref rid="b14-or-34-04-1733" ref-type="bibr">14</xref>,<xref rid="b33-or-34-04-1733" ref-type="bibr">33</xref>). The hATMSCs showed dual effects such as a strong inhibitory effect on the A549 cancer cell viability and a dramatic promoting effect on the HT-29 cancer cell viability <italic>in vitro</italic>. In particular, in consistent with a study by Fierro <italic>et al</italic> (<xref rid="b34-or-34-04-1733" ref-type="bibr">34</xref>), the hATMSCs showed a similar impact on cell viability between direct and indirect co-culture in our experiments using <italic>in vitro</italic> co-culture systems, indicating that the hATMSCs affected tumor cell growth even without direct cell-to-cell contact possibly due to certain soluble factors in the conditioned medium released from the hATMSCs. Among the many MSC-related soluble factors, proangiogenic factors, such as vascular endothelial growth factor (<xref rid="b34-or-34-04-1733" ref-type="bibr">34</xref>), fibroblast growth factor (<xref rid="b35-or-34-04-1733" ref-type="bibr">35</xref>), and angiopoietin-1 (<xref rid="b36-or-34-04-1733" ref-type="bibr">36</xref>), promote endothelial and smooth muscle migration and proliferation at the tumor site, facilitating angiogenesis. In addition, there are factors such as interleukin 6 and tumor necrosis factor &#x003B1; (<xref rid="b37-or-34-04-1733" ref-type="bibr">37</xref>) that are produced by MSCs and have immunosuppressive effects and eventually tumor supporting effects. Karnoub <italic>et al</italic> (<xref rid="b21-or-34-04-1733" ref-type="bibr">21</xref>) reported that MSC-secreted chemokine ligand 5 induced a transient pro-metastatic effect on breast cancer cells. Meanwhile, ATMSCs were found to inhibit the proliferation in primary leukemia cells by secreting DKK-1, which exhibits an inhibitory effect on &#x003B2;-catenin signaling (<xref rid="b15-or-34-04-1733" ref-type="bibr">15</xref>,<xref rid="b24-or-34-04-1733" ref-type="bibr">24</xref>). Further studies are necessary to analyze which hATMSC-releasing factors contribute to the effect of hATMSCs on tumor growth.</p>
<p>The tumor growth was differentially mediated by hATMSCs between the A549 and the HT-29 tumors with <italic>in vivo</italic> xenograft models. For functional classification of the genes that were expressed differentially following treatment with the hATMSCs in the A549 and HT-29 tumors, GO and KEGG pathway analyses were performed. Noteworthy, 17 enriched GO categories were identified in the hATMSC-treated A549 tumors (p&lt;0.01, FDR&lt;0.05), whereas no GO terms were identified in the HT-29 tumors. The GO analysis clearly showed that the treatment of the A549 tumors with the hATMSCs upregulated the expression of many genes associated with 'Regulation of cell growth', which has been known to be induced by a potential anticancer drug (<xref rid="b38-or-34-04-1733" ref-type="bibr">38</xref>). In contrast, 'Regulation of transcription (DNA-dependent)' and 'Cell-cell adhesion', which have been previously reported to be upregulated in xenograft tumor models and in cancer cell lines (<xref rid="b39-or-34-04-1733" ref-type="bibr">39</xref>,<xref rid="b40-or-34-04-1733" ref-type="bibr">40</xref>), were suppressed in the A549 tumors following treatment with the hATMSCs. Lo <italic>et al</italic> (<xref rid="b41-or-34-04-1733" ref-type="bibr">41</xref>) showed that GO biological processes, including 'Nucleosome assembly', 'Nucleosome organization', 'Protein-DNA complex assembly' and 'Chromatin assembly or disassembly' were found to be altered in Asian and Caucasian lung cancer patients. 'Nucleosome assembly' has also been known as a process which alters the regulatory mechanisms of cancer cells (<xref rid="b42-or-34-04-1733" ref-type="bibr">42</xref>). In the present study, the hATMSCs downregulated the above-mentioned biological processes in the A549 tumors. In particular, the KEGG pathway analysis indicated that 'Small cell lung cancer pathway' in the downregulated trend gene set was significant in the hATMSC-treated A549 tumors (p&lt;0.05) (data not shown). These findings presented here, suggesting that biological processes possibly associated with the tumor modulation, are active in only A549 tumors, can provide important implications to verify the dual effects of the hATMSCs.</p>
<p>To identify possible genetic factors for hATMSC-induced tumor modulation, the differentially expressed genes in proportion to xenograft tumor size following hATMSC administration were identified. Histone proteins, which are basic nuclear proteins responsible for the nucleosome structure of the chromosomal fiber, were expressed from four different clusters in the human genome. In histone cluster 1, mainly histone 1 (e.g. <italic>HIST1H1T</italic>) and histone 2 (e.g. <italic>HIST1H2BC</italic>, <italic>HIST1H2AC</italic> and <italic>HIST1H2BD</italic>) genes were found to be overexpressed in the cancer tissues (<xref rid="b43-or-34-04-1733" ref-type="bibr">43</xref>). Although there are few reports of <italic>HIST1H2AJ</italic> which is related to cancer directly, <italic>HIST1H2AJ</italic> (histone cluster 1, H2aj) was found to be expressed in direct proportion to the xenograft tumor size and is likely to be functionally relevant in tumorigenesis. We also found that <italic>NPY4R</italic> was differentially expressed in inverse proportion to the xenograft A549 and HT-29 tumor size after hATMSC administration. NPY family peptides, one of the most widely distributed peptides in the central and peripheral nervous system, regulate physiological processes associated with energy homeostasis such as energy expenditure, lipid metabolism and insulin secretion through their actions on Y receptors (<xref rid="b44-or-34-04-1733" ref-type="bibr">44</xref>&#x02013;<xref rid="b47-or-34-04-1733" ref-type="bibr">47</xref>). Moreover, the NPY system is known to be involved in cancer development via effects on energy homeostasis, immune function, as well as direct actions on tumor biology (<xref rid="b47-or-34-04-1733" ref-type="bibr">47</xref>), raising the possibility of the involvement of <italic>NPY4R</italic> expression in the regulation of tumor growth following treatment with hATMSCs.</p>
<p>Cell signaling pathways associated with translational changes have been referenced to explain the mechanisms of the conflicting effects of MSCs on tumors. PI3K/AKT was referred as a possible means related to the tumor-inhibitory effect of umbilical cord MSCs (<xref rid="b48-or-34-04-1733" ref-type="bibr">48</xref>). WNT (<xref rid="b24-or-34-04-1733" ref-type="bibr">24</xref>) and JAK/STAT pathways (<xref rid="b17-or-34-04-1733" ref-type="bibr">17</xref>) were also suggested as cell signaling pathways involved in the effects of MSCs. We additionally investigated the expression levels of certain proteins to determine which cell signaling pathways are related to the effects of hATMSCs on tumor growth. First of all, the hATMSCs affected the levels of phosphorylated NF-&#x003BA;B p65, yet not p-JAK3, p-STAT3 or &#x003B2;-catenin that are also key players in the effects of MSCs on tumors. Second, the hATMSC-induced changes in phosphorylated NF-&#x003BA;B p65 levels were correlated with the hATMSC-associated modulation on A549 and HT-29 tumor growth, suggesting the NF-&#x003BA;B pathway as a potential mediator in the effects of hATMSCs on tumors. The NF-&#x003BA;B pathway is triggered in response to infection or exposure to pro-inflammatory cytokines, leading to inhibitor of &#x003BA;B (I&#x003BA;B) degradation and finally translocation of p50/p65 heterodimers into the nucleus. In general, NF-&#x003BA;B regulates a variety of downstream genes that govern immunity, cell growth and apoptosis (<xref rid="b49-or-34-04-1733" ref-type="bibr">49</xref>). In the tumor environment, the NF-&#x003BA;B pathway is widely known to regulate the proliferation of tumor cells through the transcription of anti-apoptotic proteins, leading to the increased growth and metastasis of various types of tumors (<xref rid="b50-or-34-04-1733" ref-type="bibr">50</xref>). Actually, in the A549 and HT-29 cancer cells, correlations were reported in which cell proliferation was promoted by activation of the NF-&#x003BA;B pathway and suppressed by blocking the NF-&#x003BA;B pathway (<xref rid="b51-or-34-04-1733" ref-type="bibr">51</xref>,<xref rid="b52-or-34-04-1733" ref-type="bibr">52</xref>), supporting our hypothesis on the possible link of the NF-&#x003BA;B pathway to the tumor growth modulated by hATMSCs.</p>
<p>Given the possibility of MSCs as a novel therapeutic tool for various diseases, it is critical to explain the conflicting findings in tumor-MSC studies. Despite previous reports on the possible factors of MSC-induced tumor modulation, the exact mechanisms remain unclear. The most direct outcome of the present study is that we confirmed the dual effects of hATMSCs in the two types of cancer cells in different micro-environments <italic>in vivo</italic> and <italic>in vitro</italic>. We also suggest the possible roles of the identified gene as profiled and the NF-&#x003BA;B pathway in the dual modulatory effects of hATMSCs on tumor growth. Our findings have profound implication in understanding the interaction between MSCs and tumors although further research is needed to confirm these findings using various types of cancer.</p></sec></body>
<back>
<glossary>
<title>Abbreviations</title>
<def-list>
<def-item>
<term id="G1">hATMSCs</term>
<def>
<p>human adipose tissue-derived mesenchymal stem cells</p></def></def-item>
<def-item>
<term id="G2">NF-&#x003BA;B</term>
<def>
<p>nuclear factor &#x003BA;B</p></def></def-item>
<def-item>
<term id="G3">MSCs</term>
<def>
<p>mesenchymal stem cells</p></def></def-item>
<def-item>
<term id="G4">BM-MSCs</term>
<def>
<p>bone marrow-derived mesenchymal stem cells</p></def></def-item>
<def-item>
<term id="G5">SCID</term>
<def>
<p>severe combined immunodeficiency</p></def></def-item></def-list></glossary>
<ref-list>
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<floats-group>
<fig id="f1-or-34-04-1733" position="float">
<label>Figure 1</label>
<caption>
<p>Effects of hATMSCs on the growth of various types of tumors in <italic>in vivo</italic> xenograft models using BALB/c-nude mice. (A) Flow cytometric characterization of hATMSCs. hATMSCs were labeled with antibodies specific for hATMSC surface antigens. The number in parenthesis indicates the percentage of surface marker-positive cells. (B) Changes in tumor volume following hATMSC injection in the various tumor models. Data are expressed as means &#x000B1; SE (<sup>&#x0002A;</sup>p&lt;0.05 and <sup>&#x0002A;&#x0002A;</sup>p&lt;0.01). (C) Tumor weights at 8 weeks following hATMSC injection. Data are expressed as means &#x000B1; SD (<sup>&#x0002A;&#x0002A;</sup>p&lt;0.01). (D) Representative images of tumor growth. hATMSCs, human adipose tissue-derived mesenchymal stem cells.</p></caption>
<graphic xlink:href="OR-34-04-1733-g00.tif"/></fig>
<fig id="f2-or-34-04-1733" position="float">
<label>Figure 2</label>
<caption>
<p>Effects of hATMSCs on the growth of A549 and HT-29 tumors in <italic>in vivo</italic> xenograft models using hairless SCID mice. (A) Changes in the tumor volume following hATMSC injection in two tumor models. Data are expressed as means &#x000B1; SE (<sup>&#x0002A;</sup>p&lt;0.05 and <sup>&#x0002A;&#x0002A;</sup>p&lt;0.01). (B) Tumor weights at 8 weeks following hATMSC injection. Data are expressed as means &#x000B1; SD (<sup>&#x0002A;</sup>p&lt;0.05). (C) Representative images of tumor growth. hATMSCs, human adipose tissue-derived mesenchymal stem cells.</p></caption>
<graphic xlink:href="OR-34-04-1733-g01.tif"/></fig>
<fig id="f3-or-34-04-1733" position="float">
<label>Figure 3</label>
<caption>
<p>Co-culture effects of hATMSCs on the A549 and HT-29 tumor cells <italic>in vitro</italic>. (A) The percentage of live cells following direct or indirect co-culture of tumor cells with hATMSCs. (B) BrdU staining and flow cytometry for the proliferation rates in the indirect co-culture of tumor cells with hATMSCs. (C) Annexin V/PI double staining and flow cytometry for the apoptotic rates in the indirect co-culture of tumor cells with hATMSCs. Apoptotic cells include Annexin V<sup>+</sup>/PI<sup>+</sup> cells and Annexin V<sup>+</sup>/PI<sup>&#x02212;</sup> cells. Data are expressed as the means &#x000B1; SD (<sup>&#x0002A;</sup>p&lt;0.05 and <sup>&#x0002A;&#x0002A;</sup>p&lt;0.01). hATMSCs, human adipose tissue-derived mesenchymal stem cells.</p></caption>
<graphic xlink:href="OR-34-04-1733-g02.tif"/></fig>
<fig id="f4-or-34-04-1733" position="float">
<label>Figure 4</label>
<caption>
<p>Identification of genes exhibiting differential expression levels following hATMSC injection in the A549 and HT-29 tumor models using hairless SCID mice. (A) Genes differentially expressed (DEGs) in the microarray analysis among the groups. (B) 'Heat-map' representation of the genes differentially expressed (fold-change &gt;1.5 and p&lt;0.05). (C) The differences in <italic>HIST1H2AJ</italic>, <italic>NPY4R</italic> and <italic>LOC100505817</italic> expression (intensity) in the microarray analysis among the groups. hATMSCs, human adipose tissue-derived mesenchymal stem cells.</p></caption>
<graphic xlink:href="OR-34-04-1733-g03.tif"/></fig>
<fig id="f5-or-34-04-1733" position="float">
<label>Figure 5</label>
<caption>
<p>Effect of hATMSCs on phosphorylated NF-&#x003BA;B p65 in the A549 and HT-29 tumors <italic>in vivo</italic> and <italic>in vitro</italic>. (A) The expression levels of phosphorylated NF-&#x003BA;B p65, p-JAK3, p-STAT3, &#x003B2;-catenin and &#x003B2;-actin in A549 and HT-29 tumor masses of hairless SCID mice were detected by western blotting. (B) The mean of relative band intensities of phosphorylated NF-&#x003BA;B p65. (C) Flow cytometry for phosphorylated NF-&#x003BA;B p65 in A549 or HT-29 cells co-cultured with hATMSCs. Data are expressed as means &#x000B1; SD (<sup>&#x0002A;</sup>p&lt;0.05 and <sup>&#x0002A;&#x0002A;</sup>p&lt;0.01). hATMSCs, human adipose tissue-derived mesenchymal stem cells.</p></caption>
<graphic xlink:href="OR-34-04-1733-g04.tif"/></fig>
<table-wrap id="tI-or-34-04-1733" position="float">
<label>Table I</label>
<caption>
<p>Top 30 genes showing differential expression in the hATMSC-treated A549 tumors ranked by fold-change.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th valign="top" align="left">Probe set</th>
<th valign="top" align="center">Gene</th>
<th valign="top" align="center">Gene description</th>
<th valign="top" align="center">Fold-change<xref rid="tfn1-or-34-04-1733" ref-type="table-fn">a</xref></th></tr></thead>
<tbody>
<tr>
<td colspan="4" valign="top" align="left">Genes expressed at a higher level in A549 tumors after hATMSC injection (p&lt;0.05, fold-change &gt;1.5)</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16863393</td>
<td valign="top" align="left"><italic>IGFL2</italic></td>
<td valign="top" align="left">IGF-like family member 2</td>
<td valign="top" align="center">3.68</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16976821</td>
<td valign="top" align="left"><italic>PPBP</italic></td>
<td valign="top" align="left">Pro-platelet basic protein &#x0005B;chemokine (C-X-C motif) ligand 7&#x0005D;</td>
<td valign="top" align="center">3.18</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17061759</td>
<td valign="top" align="left"><italic>NRCAM</italic></td>
<td valign="top" align="left">Neuronal cell adhesion molecule</td>
<td valign="top" align="center">2.77</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16852322</td>
<td valign="top" align="left"><italic>MAPK4</italic></td>
<td valign="top" align="left">Mitogen-activated protein kinase 4</td>
<td valign="top" align="center">2.47</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16873513</td>
<td valign="top" align="left"><italic>LOC400706</italic></td>
<td valign="top" align="left">Uncharacterized LOC400706</td>
<td valign="top" align="center">2.46</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17083433</td>
<td valign="top" align="left"><italic>IL33</italic></td>
<td valign="top" align="left">Interleukin 33</td>
<td valign="top" align="center">2.45</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16745990</td>
<td valign="top" align="left"><italic>miR3167</italic></td>
<td valign="top" align="left">MicroRNA 3167</td>
<td valign="top" align="center">2.17</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16909319</td>
<td valign="top" align="left"><italic>DNER</italic></td>
<td valign="top" align="left">&#x00394;/notch-like EGF repeat containing</td>
<td valign="top" align="center">2.07</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17022996</td>
<td valign="top" align="left"><italic>ROS1</italic></td>
<td valign="top" align="left">c-ros oncogene 1, receptor tyrosine kinase</td>
<td valign="top" align="center">1.97</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16713760</td>
<td valign="top" align="left"><italic>HNRNPA1P33</italic></td>
<td valign="top" align="left">Heterogeneous nuclear ribonucleoprotein A1 pseudogene 33</td>
<td valign="top" align="center">1.97</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16733325</td>
<td valign="top" align="left"><italic>KIRREL3-AS2</italic></td>
<td valign="top" align="left">KIRREL3 antisense RNA 2</td>
<td valign="top" align="center">1.87</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16704464</td>
<td valign="top" align="left"><italic>NPY4R</italic></td>
<td valign="top" align="left">Neuropeptide Y receptor Y4</td>
<td valign="top" align="center">1.86</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16742086</td>
<td valign="top" align="left"><italic>PGM2L1</italic></td>
<td valign="top" align="left">Phosphoglucomutase 2-like 1</td>
<td valign="top" align="center">1.85</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16710126</td>
<td valign="top" align="left"><italic>HTRA1</italic></td>
<td valign="top" align="left">HtrA serine peptidase 1</td>
<td valign="top" align="center">1.79</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17012392</td>
<td valign="top" align="left"><italic>RSPO3</italic></td>
<td valign="top" align="left">R-spondin 3</td>
<td valign="top" align="center">1.69</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16737590</td>
<td valign="top" align="left"><italic>SYT13</italic></td>
<td valign="top" align="left">Synaptotagmin XIII</td>
<td valign="top" align="center">1.66</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16997795</td>
<td valign="top" align="left"><italic>VCAN-AS1</italic></td>
<td valign="top" align="left">VCAN antisense RNA 1</td>
<td valign="top" align="center">1.66</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16852849</td>
<td valign="top" align="left"><italic>SERPINB11</italic></td>
<td valign="top" align="left">Serpin peptidase inhibitor, clade B (ovalbumin), member 11 (gene/pseudogene)</td>
<td valign="top" align="center">1.63</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16958382</td>
<td valign="top" align="left"><italic>MUC13</italic></td>
<td valign="top" align="left">Mucin 13, cell surface associated</td>
<td valign="top" align="center">1.62</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16713762</td>
<td valign="top" align="left"><italic>ANXA8L1</italic></td>
<td valign="top" align="left">Annexin A8-like 1</td>
<td valign="top" align="center">1.61</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16851950</td>
<td valign="top" align="left"><italic>miR3975</italic></td>
<td valign="top" align="left">MicroRNA 3975</td>
<td valign="top" align="center">1.59</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17060820</td>
<td valign="top" align="left"><italic>MUC12</italic></td>
<td valign="top" align="left">Mucin 12, cell surface associated</td>
<td valign="top" align="center">1.58</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16705934</td>
<td valign="top" align="left"><italic>CHST3</italic></td>
<td valign="top" align="left">Carbohydrate (chondroitin 6) sulfotransferase 3</td>
<td valign="top" align="center">1.58</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16677556</td>
<td valign="top" align="left"><italic>TGFB2</italic></td>
<td valign="top" align="left">Transforming growth factor, &#x003B2;2</td>
<td valign="top" align="center">1.57</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16704614</td>
<td valign="top" align="left"><italic>ANXA8</italic></td>
<td valign="top" align="left">Annexin A8</td>
<td valign="top" align="center">1.55</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16704516</td>
<td valign="top" align="left"><italic>ANXA8L2</italic></td>
<td valign="top" align="left">Annexin A8-like 2</td>
<td valign="top" align="center">1.55</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16957304</td>
<td valign="top" align="left"><italic>ZBED2</italic></td>
<td valign="top" align="left">Zinc finger, BED-type containing 2</td>
<td valign="top" align="center">1.54</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16960922</td>
<td valign="top" align="left"><italic>RARRES1</italic></td>
<td valign="top" align="left">Retinoic acid receptor responder (tazarotene induced) 1</td>
<td valign="top" align="center">1.51</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17067696</td>
<td valign="top" align="left"><italic>NRG1</italic></td>
<td valign="top" align="left">Neuregulin 1</td>
<td valign="top" align="center">1.50</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16697674</td>
<td valign="top" align="left"><italic>LINC00862</italic></td>
<td valign="top" align="left">Long intergenic non-protein coding RNA 862</td>
<td valign="top" align="center">1.50</td></tr>
<tr>
<td colspan="4" valign="top" align="left">Genes expressed at a lower level in A549 tumors after hATMSC injection (p&lt;0.05, fold-change &gt;1.5)</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16971272</td>
<td valign="top" align="left"><italic>EDNRA</italic></td>
<td valign="top" align="left">Endothelin receptor type A</td>
<td valign="top" align="center">&#x02212;4.75</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17113448</td>
<td valign="top" align="left"><italic>IL13RA2</italic></td>
<td valign="top" align="left">Interleukin 13 receptor, &#x003B1;2</td>
<td valign="top" align="center">&#x02212;4.58</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17112149</td>
<td valign="top" align="left"><italic>XIST</italic></td>
<td valign="top" align="left">X inactive specific transcript (non-protein coding)</td>
<td valign="top" align="center">&#x02212;4.44</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16965377</td>
<td valign="top" align="left"><italic>SLIT2</italic></td>
<td valign="top" align="left">Slit homolog 2 (<italic>Drosophila</italic>)</td>
<td valign="top" align="center">&#x02212;4.32</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16977241</td>
<td valign="top" align="left"><italic>NAA11</italic></td>
<td valign="top" align="left">N(&#x003B1;)-acetyltransferase 11, NatA catalytic subunit</td>
<td valign="top" align="center">&#x02212;4.22</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17055447</td>
<td valign="top" align="left"><italic>MEOX2</italic></td>
<td valign="top" align="left">Mesenchyme homeobox 2</td>
<td valign="top" align="center">&#x02212;4.11</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17101570</td>
<td valign="top" align="left"><italic>LOC100133123</italic></td>
<td valign="top" align="left">Uncharacterized LOC100133123</td>
<td valign="top" align="center">&#x02212;4.05</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16870838</td>
<td valign="top" align="left"><italic>ZNF208</italic></td>
<td valign="top" align="left">Zinc finger protein 208</td>
<td valign="top" align="center">&#x02212;4.01</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17001578</td>
<td valign="top" align="left"><italic>PDGFRB</italic></td>
<td valign="top" align="left">Platelet-derived growth factor receptor, &#x003B2; polypeptide</td>
<td valign="top" align="center">&#x02212;3.93</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16732840</td>
<td valign="top" align="left"><italic>OR8G2</italic></td>
<td valign="top" align="left">Olfactory receptor, family 8, subfamily G, member 2</td>
<td valign="top" align="center">&#x02212;3.91</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16736764</td>
<td valign="top" align="left"><italic>MUC15</italic></td>
<td valign="top" align="left">Mucin 15, cell surface associated</td>
<td valign="top" align="center">&#x02212;3.86</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16870821</td>
<td valign="top" align="left"><italic>ZNF100</italic></td>
<td valign="top" align="left">Zinc finger protein 100</td>
<td valign="top" align="center">&#x02212;3.83</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16909828</td>
<td valign="top" align="left"><italic>COL6A3</italic></td>
<td valign="top" align="left">Collagen, type VI, &#x003B1;3</td>
<td valign="top" align="center">&#x02212;3.72</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16997383</td>
<td valign="top" align="left"><italic>F2RL2</italic></td>
<td valign="top" align="left">Coagulation factor II (thrombin) receptor-like 2</td>
<td valign="top" align="center">&#x02212;3.68</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16979875</td>
<td valign="top" align="left"><italic>PCDH18</italic></td>
<td valign="top" align="left">Protocadherin 18</td>
<td valign="top" align="center">&#x02212;3.62</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17058002</td>
<td valign="top" align="left"><italic>LOC650226</italic></td>
<td valign="top" align="left">Ankyrin repeat domain 26 pseudogene</td>
<td valign="top" align="center">&#x02212;3.56</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16942958</td>
<td valign="top" align="left"><italic>EPHA3</italic></td>
<td valign="top" align="left">EPH receptor A3</td>
<td valign="top" align="center">&#x02212;3.52</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17108003</td>
<td valign="top" align="left"><italic>BGN</italic></td>
<td valign="top" align="left">Biglycan</td>
<td valign="top" align="center">&#x02212;3.51</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16852966</td>
<td valign="top" align="left"><italic>CCDC102B</italic></td>
<td valign="top" align="left">Coiled-coil domain containing 102B</td>
<td valign="top" align="center">&#x02212;3.51</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17097661</td>
<td valign="top" align="left">TNC</td>
<td valign="top" align="left">Tenascin C</td>
<td valign="top" align="center">&#x02212;3.45</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17078870</td>
<td valign="top" align="left"><italic>MMP16</italic></td>
<td valign="top" align="left">Matrix metallopeptidase 16 (membrane-inserted)</td>
<td valign="top" align="center">&#x02212;3.32</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16772888</td>
<td valign="top" align="left"><italic>RNU6-52P</italic></td>
<td valign="top" align="left">RNA, U6 small nuclear 52, pseudogene</td>
<td valign="top" align="center">&#x02212;3.29</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16870854</td>
<td valign="top" align="left"><italic>ZNF676</italic></td>
<td valign="top" align="left">Zinc finger protein 676</td>
<td valign="top" align="center">&#x02212;3.21</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16888610</td>
<td valign="top" align="left"><italic>COL3A1</italic></td>
<td valign="top" align="left">Collagen, type III, &#x003B1;1</td>
<td valign="top" align="center">&#x02212;3.13</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16923842</td>
<td valign="top" align="left"><italic>COL6A1</italic></td>
<td valign="top" align="left">Collagen, type VI, &#x003B1;1</td>
<td valign="top" align="center">&#x02212;3.13</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16666509</td>
<td valign="top" align="left"><italic>IFI44</italic></td>
<td valign="top" align="left">Interferon-induced protein 44</td>
<td valign="top" align="center">&#x02212;3.08</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17107835</td>
<td valign="top" align="left"><italic>MAGEA4</italic></td>
<td valign="top" align="left">Melanoma antigen family A, 4</td>
<td valign="top" align="center">&#x02212;3.04</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17107867</td>
<td valign="top" align="left"><italic>MAGEA6</italic></td>
<td valign="top" align="left">Melanoma antigen family A, 6</td>
<td valign="top" align="center">&#x02212;3.02</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16673075</td>
<td valign="top" align="left"><italic>DDR2</italic></td>
<td valign="top" align="left">Discoidin domain receptor tyrosine kinase 2</td>
<td valign="top" align="center">&#x02212;3.00</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16885596</td>
<td valign="top" align="left"><italic>POTEJ</italic></td>
<td valign="top" align="left">POTE ankyrin domain family, member J</td>
<td valign="top" align="center">&#x02212;2.97</td></tr></tbody></table>
<table-wrap-foot><fn id="tfn1-or-34-04-1733">
<label>a</label>
<p>Each value represents the fold-change (in log<sub>2</sub> value) vs. the control group. hATMSCs, human adipose tissue-derived mesenchymal stem cells.</p></fn></table-wrap-foot></table-wrap>
<table-wrap id="tII-or-34-04-1733" position="float">
<label>Table II</label>
<caption>
<p>Genes showing differential expression in the hATMSC-treated HT-29 tumors ranked by fold-change.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th valign="top" align="left">Probe set</th>
<th valign="top" align="center">Gene</th>
<th valign="top" align="center">Gene description</th>
<th valign="top" align="center">Fold-change<xref rid="tfn2-or-34-04-1733" ref-type="table-fn">a</xref></th></tr></thead>
<tbody>
<tr>
<td colspan="4" valign="top" align="left">Genes expressed at a higher level in the HT-29 tumors after hATMSC injection (p&lt;0.05, fold-change &gt;1.5)</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16703429</td>
<td valign="top" align="left"><italic>RNA5SP307</italic></td>
<td valign="top" align="left">RNA, 5S ribosomal pseudogene 307</td>
<td valign="top" align="center">0.97</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17016490</td>
<td valign="top" align="left"><italic>HIST1H2AJ</italic></td>
<td valign="top" align="left">Histone cluster 1, H2aj</td>
<td valign="top" align="center">0.91</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16761541</td>
<td valign="top" align="left"><italic>PRB4</italic></td>
<td valign="top" align="left">Proline-rich protein BstNI subfamily 4</td>
<td valign="top" align="center">0.85</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17063776</td>
<td valign="top" align="left"><italic>TRBV6-8</italic></td>
<td valign="top" align="left">T cell receptor &#x003B2; variable 6-8</td>
<td valign="top" align="center">0.77</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16854216</td>
<td valign="top" align="left"><italic>miR133A1</italic></td>
<td valign="top" align="left">MicroRNA 133a-1</td>
<td valign="top" align="center">0.74</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16943350</td>
<td valign="top" align="left"><italic>GPR128</italic></td>
<td valign="top" align="left">G protein-coupled receptor 128</td>
<td valign="top" align="center">0.67</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17117463</td>
<td valign="top" align="left"><italic>LOC100509635</italic></td>
<td valign="top" align="left">Uncharacterized LOC100509635</td>
<td valign="top" align="center">0.64</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17063800</td>
<td valign="top" align="left"><italic>TRBV7-4</italic></td>
<td valign="top" align="left">T cell receptor &#x003B2; variable 7-4 (gene/pseudogene)</td>
<td valign="top" align="center">0.63</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16904484</td>
<td valign="top" align="left"><italic>SNORA70F</italic></td>
<td valign="top" align="left">Small nucleolar RNA, H/ACA box 70F</td>
<td valign="top" align="center">0.61</td></tr>
<tr>
<td colspan="4" valign="top" align="left">Genes expressed at a lower level in the HT-29 tumors after hATMSC injection (p&lt;0.05, fold-change &gt;1.5)</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16691574</td>
<td valign="top" align="left"><italic>RNA5SP56</italic></td>
<td valign="top" align="left">RNA, 5S ribosomal pseudogene 56</td>
<td valign="top" align="center">&#x02212;1.05</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16798050</td>
<td valign="top" align="left"><italic>PAR-SN</italic></td>
<td valign="top" align="left">Paternally expressed transcript PAR-SN</td>
<td valign="top" align="center">&#x02212;0.74</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17114740</td>
<td valign="top" align="left"><italic>SPANXN3</italic></td>
<td valign="top" align="left">SPANX family, member N3</td>
<td valign="top" align="center">&#x02212;0.74</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16798146</td>
<td valign="top" align="left"><italic>SNORD116-5</italic></td>
<td valign="top" align="left">Small nucleolar RNA, C/D box 116-5</td>
<td valign="top" align="center">&#x02212;0.73</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16798150</td>
<td valign="top" align="left"><italic>SNORD116-5</italic></td>
<td valign="top" align="left">Small nucleolar RNA, C/D box 116-5</td>
<td valign="top" align="center">&#x02212;0.73</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16734339</td>
<td valign="top" align="left"><italic>miR4298</italic></td>
<td valign="top" align="left">MicroRNA 4298</td>
<td valign="top" align="center">&#x02212;0.72</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16716369</td>
<td valign="top" align="left"><italic>miR4679-2</italic></td>
<td valign="top" align="left">MicroRNA 4679-2</td>
<td valign="top" align="center">&#x02212;0.70</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16743207</td>
<td valign="top" align="left"><italic>TRIM51EP</italic></td>
<td valign="top" align="left">Tripartite motif-containing 51E, pseudogene</td>
<td valign="top" align="center">&#x02212;0.68</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16853028</td>
<td valign="top" align="left"><italic>LOC100505817</italic></td>
<td valign="top" align="left">Uncharacterized LOC100505817</td>
<td valign="top" align="center">&#x02212;0.64</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16767367</td>
<td valign="top" align="left"><italic>miR3913-1</italic></td>
<td valign="top" align="left">MicroRNA 3913-1</td>
<td valign="top" align="center">&#x02212;0.63</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17114772</td>
<td valign="top" align="left"><italic>miR891B</italic></td>
<td valign="top" align="left">MicroRNA 891b</td>
<td valign="top" align="center">&#x02212;0.60</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16696120</td>
<td valign="top" align="left"><italic>DPT</italic></td>
<td valign="top" align="left">Dermatopontin</td>
<td valign="top" align="center">&#x02212;0.59</td></tr>
<tr>
<td valign="top" align="left">&#x02003;17096623</td>
<td valign="top" align="left"><italic>BAAT</italic></td>
<td valign="top" align="left">Bile acid CoA: amino acid N-acyltransferase (glycine N-choloyltransferase)</td>
<td valign="top" align="center">&#x02212;0.59</td></tr>
<tr>
<td valign="top" align="left">&#x02003;16704464</td>
<td valign="top" align="left"><italic>NPY4R</italic></td>
<td valign="top" align="left">Neuropeptide Y receptor Y4</td>
<td valign="top" align="center">&#x02212;0.59</td></tr></tbody></table>
<table-wrap-foot><fn id="tfn2-or-34-04-1733">
<label>a</label>
<p>Each value represents the fold-change (in log<sub>2</sub> value) vs. the control group. hATMSCs, human adipose tissue-derived mesenchymal stem cells.</p></fn></table-wrap-foot></table-wrap>
<table-wrap id="tIII-or-34-04-1733" position="float">
<label>Table III</label>
<caption>
<p>GO terms associated with upregulated and downregulated trends in the hATMSC-treated A549 tumors (p&lt;0.01, FDR&lt;0.05).</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th valign="top" align="left">GO ID</th>
<th valign="top" align="center">Biological process term</th>
<th valign="top" align="center">Gene count</th>
<th valign="top" align="center">P-value</th>
<th valign="top" align="center">Benjamini</th>
<th valign="top" align="center">FDR</th></tr></thead>
<tbody>
<tr>
<td colspan="6" valign="top" align="left">Upregulated trend</td></tr>
<tr>
<td valign="top" align="left">&#x02003;GO:0040008</td>
<td valign="top" align="left">Regulation of growth</td>
<td valign="top" align="center">24</td>
<td valign="top" align="left">1.19E-05</td>
<td valign="top" align="left">0.0258</td>
<td valign="top" align="left">0.021</td></tr>
<tr>
<td valign="top" align="left">&#x02003;GO:0001558</td>
<td valign="top" align="left">Regulation of cell growth</td>
<td valign="top" align="center">17</td>
<td valign="top" align="left">2.37E-05</td>
<td valign="top" align="left">0.0256</td>
<td valign="top" align="left">0.041</td></tr>
<tr>
<td colspan="6" valign="top" align="left">Downregulated trend</td></tr>
<tr>
<td valign="top" align="left">&#x02003;GO:0006334</td>
<td valign="top" align="left">Nucleosome assembly</td>
<td valign="top" align="center">24</td>
<td valign="top" align="left">9.31E-11</td>
<td valign="top" align="left">2.44E-07</td>
<td valign="top" align="left">1.65E-07</td></tr>
<tr>
<td valign="top" align="left">&#x02003;GO:0034728</td>
<td valign="top" align="left">Nucleosome organization</td>
<td valign="top" align="center">25</td>
<td valign="top" align="left">1.41E-10</td>
<td valign="top" align="left">1.85E-07</td>
<td valign="top" align="left">2.51E-07</td></tr>
<tr>
<td valign="top" align="left">&#x02003;GO:0031497</td>
<td valign="top" align="left">Chromatin assembly</td>
<td valign="top" align="center">24</td>
<td valign="top" align="left">2.02E-10</td>
<td valign="top" align="left">1.77E-07</td>
<td valign="top" align="left">3.58E-07</td></tr>
<tr>
<td valign="top" align="left">&#x02003;GO:0065004</td>
<td valign="top" align="left">Protein-DNA complex assembly</td>
<td valign="top" align="center">24</td>
<td valign="top" align="left">5.37E-10</td>
<td valign="top" align="left">3.53E-07</td>
<td valign="top" align="left">9.52E-07</td></tr>
<tr>
<td valign="top" align="left">&#x02003;GO:0006323</td>
<td valign="top" align="left">DNA packaging</td>
<td valign="top" align="center">27</td>
<td valign="top" align="left">8.47E-10</td>
<td valign="top" align="left">4.45E-07</td>
<td valign="top" align="left">1.50E-06</td></tr>
<tr>
<td valign="top" align="left">&#x02003;GO:0006333</td>
<td valign="top" align="left">Chromatin assembly or disassembly</td>
<td valign="top" align="center">28</td>
<td valign="top" align="left">1.15E-09</td>
<td valign="top" align="left">5.02E-07</td>
<td valign="top" align="left">2.03E-06</td></tr>
<tr>
<td valign="top" align="left">&#x02003;GO:0006350</td>
<td valign="top" align="left">Transcription</td>
<td valign="top" align="center">175</td>
<td valign="top" align="left">9.61E-09</td>
<td valign="top" align="left">3.60E-06</td>
<td valign="top" align="left">1.70E-05</td></tr>
<tr>
<td valign="top" align="left">&#x02003;GO:0006355</td>
<td valign="top" align="left">Regulation of transcription, DNA-dependent</td>
<td valign="top" align="center">151</td>
<td valign="top" align="left">3.65E-08</td>
<td valign="top" align="left">1.20E-05</td>
<td valign="top" align="left">6.47E-05</td></tr>
<tr>
<td valign="top" align="left">&#x02003;GO:0051252</td>
<td valign="top" align="left">Regulation of RNA metabolic process</td>
<td valign="top" align="center">153</td>
<td valign="top" align="left">5.05E-08</td>
<td valign="top" align="left">1.47E-05</td>
<td valign="top" align="left">8.96E-05</td></tr>
<tr>
<td valign="top" align="left">&#x02003;GO:0034621</td>
<td valign="top" align="left">Cellular macromolecular complex subunit organization</td>
<td valign="top" align="center">45</td>
<td valign="top" align="left">5.14E-07</td>
<td valign="top" align="left">1.35E-04</td>
<td valign="top" align="left">9.12E-04</td></tr>
<tr>
<td valign="top" align="left">&#x02003;GO:0034622</td>
<td valign="top" align="left">Cellular macromolecular complex assembly</td>
<td valign="top" align="center">41</td>
<td valign="top" align="left">1.01E-06</td>
<td valign="top" align="left">2.41E-04</td>
<td valign="top" align="left">0.002</td></tr>
<tr>
<td valign="top" align="left">&#x02003;GO:0006325</td>
<td valign="top" align="left">Chromatin organization</td>
<td valign="top" align="center">46</td>
<td valign="top" align="left">1.01E-06</td>
<td valign="top" align="left">2.22E-04</td>
<td valign="top" align="left">0.002</td></tr>
<tr>
<td valign="top" align="left">&#x02003;GO:0016339</td>
<td valign="top" align="left">Calcium-dependent cell-cell adhesion</td>
<td valign="top" align="center">10</td>
<td valign="top" align="left">1.91E-06</td>
<td valign="top" align="left">3.85E-04</td>
<td valign="top" align="left">0.003</td></tr>
<tr>
<td valign="top" align="left">&#x02003;GO:0045449</td>
<td valign="top" align="left">Regulation of transcription</td>
<td valign="top" align="center">193</td>
<td valign="top" align="left">6.37E-06</td>
<td valign="top" align="left">0.0012</td>
<td valign="top" align="left">0.011</td></tr>
<tr>
<td valign="top" align="left">&#x02003;GO:0051276</td>
<td valign="top" align="left">Chromosome organization</td>
<td valign="top" align="center">52</td>
<td valign="top" align="left">7.69E-06</td>
<td valign="top" align="left">0.0013</td>
<td valign="top" align="left">0.014</td></tr></tbody></table>
<table-wrap-foot><fn id="tfn3-or-34-04-1733">
<p>GO, Gene Ontology; FDR, false discovery rate.</p></fn></table-wrap-foot></table-wrap></floats-group></article>
