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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">MCO</journal-id>
<journal-title-group>
<journal-title>Molecular and Clinical Oncology</journal-title>
</journal-title-group>
<issn pub-type="ppub">2049-9450</issn>
<issn pub-type="epub">2049-9469</issn>
<publisher>
<publisher-name>D.A. Spandidos</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">MCO-16-4-02519</article-id>
<article-id pub-id-type="doi">10.3892/mco.2022.2519</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Articles</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>ALU repeat as potential molecular marker in the detection and prognosis of different cancer types: A systematic review</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Shaban</surname><given-names>Semaa A.</given-names></name>
<xref rid="af1-MCO-16-4-02519" ref-type="aff">1</xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Al-Rahim</surname><given-names>Aya M.</given-names></name>
<xref rid="af2-MCO-16-4-02519" ref-type="aff">2</xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Suleiman</surname><given-names>Ahmed Abduljabbar</given-names></name>
<xref rid="af3-MCO-16-4-02519" ref-type="aff">3</xref>
<xref rid="c1-MCO-16-4-02519" ref-type="corresp"/>
</contrib>
</contrib-group>
<aff id="af1-MCO-16-4-02519"><label>1</label>Department of Biology, College of Sciences, Tikrit University, Tikrit, Saladin 34001, Iraq</aff>
<aff id="af2-MCO-16-4-02519"><label>2</label>Department of Molecular and Medical Biotechnology, College of Biotechnology, Al-Nahrain University, Baghdad 64074, Iraq</aff>
<aff id="af3-MCO-16-4-02519"><label>3</label>Department of Biotechnology, Science College, University of Anbar, Ramadi, Anbar 46006, Iraq</aff>
<author-notes>
<corresp id="c1-MCO-16-4-02519"><italic>Correspondence to:</italic> Dr Ahmed Abduljabbar Suleiman, Department of Biotechnology, Science College, University of Anbar, Tameen, Anbar University Campus, Ramadi, Anbar 46006, Iraq <email>ahmed.suleiman@uoanbar.edu.iq</email></corresp>
</author-notes>
<pub-date pub-type="ppub">
<month>04</month>
<year>2022</year></pub-date>
<pub-date pub-type="epub">
<day>21</day>
<month>02</month>
<year>2022</year></pub-date>
<volume>16</volume>
<issue>4</issue>
<elocation-id>86</elocation-id>
<history>
<date date-type="received">
<day>03</day>
<month>12</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>13</day>
<month>01</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright: &#x00A9; Shaban et al.</copyright-statement>
<copyright-year>2020</copyright-year>
<license license-type="open-access">
<license-p>This is an open access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by-nc-nd/4.0/">Creative Commons Attribution-NonCommercial-NoDerivs License</ext-link>, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.</license-p></license>
</permissions>
<abstract>
<p>Cancer is a major health issue worldwide. cfDNA integrity has been reported as a potential diagnostic molecular marker for different types of cancer, identifying the importance of liquid biopsy. The aim of this review was to evaluate the prognostic and diagnostic performance of <italic>Arthrobacter luteus</italic> (ALU) repeat in tumor. Following a thorough review of the literature published from January, 2000 to September 2021, 36 studies were included. All of the study descriptions were analyzed. According to several studies, there were increased concentrations of ALU repetitive elements in cancer patients, while these concentrations were decreased in control, benign, different cancer stage, and other diseases. The total ALU (115 and 247) sequence levels are potential biomarkers for the purpose of investigations and cancer prognosis.</p>
</abstract>
<kwd-group>
<kwd>cell-free DNA</kwd>
<kwd><italic>Arthrobacter luteus</italic> sequences</kwd>
<kwd>cancer</kwd>
<kwd>liquid biopsy</kwd>
<kwd>biomarker</kwd>
</kwd-group>
<funding-group>
<funding-statement><bold>Funding:</bold> Not applicable.</funding-statement>
</funding-group>
</article-meta>
</front>
<body>
<sec sec-type="intro">
<title>Introduction</title>
<p>In both developed and developing countries, cancer is a major health issue and a leading cause of mortality that is still on the increase, worldwide. According to the International Agency for Research on Cancer, in 2018, 9.6 million individuals died from cancer, an increase from 8.2 million in 2012 and 7.6 million in 2008 (<xref rid="b1-MCO-16-4-02519 b2-MCO-16-4-02519 b3-MCO-16-4-02519" ref-type="bibr">1-3</xref>). Tumorigenesis is a multi-step, multi-factorial disease described by genetic and epigenetic changes, which is difficult to control and prevent (<xref rid="b4-MCO-16-4-02519" ref-type="bibr">4</xref>). In 2012, the WHO&#x0027;s International Agency for Research on Cancer predicted that by 2030, worldwide, there would be 21.7 million newly diagnosed cancer cases and 13 million cancer deaths as a result of population growth and the increase in life expectancy (<xref rid="b5-MCO-16-4-02519" ref-type="bibr">5</xref>).</p>
<p>Cancer is a major health problem that affects individuals globally. Several types of cancer can be avoided if diagnosed early enough. However, tumors such as lung, colon, and breast cancers frequently have late-stage diagnosis. Despite efforts to ensure survival is prolonged, only a moderate improvement has been achieved in cancer patients. Failure to diagnose cancer early generally leads to ineffective treatment and an even worse prognosis. The availability of robust diagnostic biomarkers is critical for diagnosing cancer patients at an early stage and thereby greatly reducing overall mortality rates. (<xref rid="b6-MCO-16-4-02519" ref-type="bibr">6</xref>).</p>
<p>Circulating molecular biomarkers have increasingly been used as a liquid biopsy in the peripheral blood and have the benefit of being easily accessible, with early detection, and reproducibility (<xref rid="b7-MCO-16-4-02519" ref-type="bibr">7</xref>). Circulating tumor cells, circulating DNA, and microRNAs have been studied as a detection tool and prognosis of various cancer types (<xref rid="b8-MCO-16-4-02519 b9-MCO-16-4-02519 b10-MCO-16-4-02519 b11-MCO-16-4-02519 b12-MCO-16-4-02519 b13-MCO-16-4-02519" ref-type="bibr">8-13</xref>).</p>
<p>DNA is a molecule that may be found inside and outside of cells. Extracellular DNA can be found in blood and other body fluids. Cell-free DNA refers to the degraded DNA fragments floating in the circulation (cfDNA). DNA in the bloodstream releases apoptotic or necrotic cells. The length of DNA fragments and distribution of DNA size could signify cfDNA source (<xref rid="b14-MCO-16-4-02519" ref-type="bibr">14</xref>). Apoptosis of the cell naturally occurs, and DNA is divided into similar fragments of 185-200 bp. However, tumor necrosis produces similar fragments of DNA in variable lengths generally &#x003E;200 bp (<xref rid="b15-MCO-16-4-02519" ref-type="bibr">15</xref>). Circulating tumor DNAs (ctDNAs) based DNA integrity index served as a possible indicator of prognosis in hepatocellular carcinoma, lymphoma, colorectal, lung, and breast cancer (<xref rid="b15-MCO-16-4-02519 b16-MCO-16-4-02519 b17-MCO-16-4-02519 b18-MCO-16-4-02519 b19-MCO-16-4-02519" ref-type="bibr">15-19</xref>). DNA analysis can be conducted on the basis of ctDNA (from a liquid biopsy) as well as directly isolated DNA from tumor tissue acquired by biopsy or excision (<xref rid="b20-MCO-16-4-02519" ref-type="bibr">20</xref>).</p>
<p>According to Iqbal <italic>et al</italic> (<xref rid="b21-MCO-16-4-02519" ref-type="bibr">21</xref>) presence of cfDNA in blood, although reported in 1948 by Mandel and Metais (<xref rid="b22-MCO-16-4-02519" ref-type="bibr">22</xref>), was rediscovered after 30 years in autoimmune disorders by Tan <italic>et al</italic> in 1966(<xref rid="b23-MCO-16-4-02519" ref-type="bibr">23</xref>) and in cancer by Leon <italic>et al</italic> in 1977(<xref rid="b24-MCO-16-4-02519" ref-type="bibr">24</xref>).</p>
<p>Apoptosis is the source of cfDNA in a healthy person, raising shorter and evenly sized DNA fragments. Furthermore, in cancer, necrosis results in unequal longer DNA fragments in addition to the shorter apoptotic fragment (<xref rid="b25-MCO-16-4-02519 b26-MCO-16-4-02519 b27-MCO-16-4-02519" ref-type="bibr">25-27</xref>). As a result, higher levels of longer DNA fragments in the blood have been identified as a useful indicator of the existence of malignant tumor DNA (<xref rid="b26-MCO-16-4-02519 b27-MCO-16-4-02519 b28-MCO-16-4-02519" ref-type="bibr">26-28</xref>). The cfDNA concentration in serum is higher in patients with cancer when compared to healthy individuals (<xref rid="b5-MCO-16-4-02519" ref-type="bibr">5</xref>,<xref rid="b29-MCO-16-4-02519 b30-MCO-16-4-02519 b31-MCO-16-4-02519" ref-type="bibr">29-31</xref>).</p>
<p>The variability of cfDNA levels in patients is most probably associated with tumor stage, burden, cellular turnover, vascularity, and response to therapy with the highest levels reported in patients with metastatic and advanced disease (<xref rid="b32-MCO-16-4-02519" ref-type="bibr">32</xref>).</p>
<p>cfDNA levels have been found to be elevated in a variety of cancers (<xref rid="b7-MCO-16-4-02519" ref-type="bibr">7</xref>). One measure of cfDNA fragmentation is cfDNA integrity (cfDI), which is calculated as the ratio of longer to shorter DNA fragment concentrations at the same genetic location (<xref rid="b29-MCO-16-4-02519" ref-type="bibr">29</xref>).</p>
<p>A liquid biopsy is a viable alternative consisting of the circulating analysis (cfDI). This main advantage of this method is that it is less invasive, using just a sample of peripheral blood. During the past two decades, cfDI analysis has emerged as a promising tool for cancer diagnosis and prognosis (<xref rid="b33-MCO-16-4-02519" ref-type="bibr">33</xref>,<xref rid="b34-MCO-16-4-02519" ref-type="bibr">34</xref>).</p>
<p>The <italic>Arthrobacter luteus</italic> (ALU) repeats are the most predominant repetitive sequences in the human genome, 300 bp in length, with 1.4x10<sup>6</sup> copy number per genome. Most studies used DNA integrity, defined as the ratio of ALU 247 long fragments released from necrotic cells and ALU 115 short fragments released from normal cells (<xref rid="b35-MCO-16-4-02519" ref-type="bibr">35</xref>).</p>
<p>ALU-quantitative PCR (qPCR) has become the most widely used technology for detecting the DNA integrity index (<xref rid="b32-MCO-16-4-02519" ref-type="bibr">32</xref>). ALU covers over 10&#x0025; of the human genome (<xref rid="b36-MCO-16-4-02519" ref-type="bibr">36</xref>). Research has been conducted to assess the potential use of cfDI from the ALU variable as a diagnostic biomarker for a variety of cancers, such as breast and prostate cancer (<xref rid="b37-MCO-16-4-02519" ref-type="bibr">37</xref>).</p>
<p>A higher portion of longer DNA fragments has been recommended as a cancer detection biomarker (<xref rid="b26-MCO-16-4-02519" ref-type="bibr">26</xref>). Several formulae have been presented to objectively calculate the &#x2018;DNA integrity index&#x2019; as a ratio of longer and smaller fragments. Umetani <italic>et al</italic> (<xref rid="b27-MCO-16-4-02519" ref-type="bibr">27</xref>,<xref rid="b38-MCO-16-4-02519" ref-type="bibr">38</xref>) determined the pure ratio of ALU 247 and ALU 115 concentrations in patients&#x0027; blood, while Wang <italic>et al</italic> (<xref rid="b39-MCO-16-4-02519" ref-type="bibr">39</xref>) assessed DNA integrity in patient plasma using a calculation based on delta-Cp values. Patients with ovarian, breast and colorectal cancer had higher DNA integrities in serum and plasma than controls, according to both authors (<xref rid="b27-MCO-16-4-02519" ref-type="bibr">27</xref>,<xref rid="b38-MCO-16-4-02519" ref-type="bibr">38</xref>). Other studies, on the other hand, could not find a difference in DNA integrity values in the same tumor types (<xref rid="b40-MCO-16-4-02519 b41-MCO-16-4-02519 b42-MCO-16-4-02519" ref-type="bibr">40-42</xref>).</p>
<p>However, in different studies, the performance of ALU repeat as a biomarker for cancer diagnosis varied widely. Therefore, this systematic study, to the best of our knowledge, is the first to clarify the diagnostic and prognostic role of ALU elements as a molecular marker of cancer.</p>
</sec>
<sec sec-type="Materials|methods">
<title>Materials and methods</title>
<sec>
<title/>
<sec>
<title>Strategy of search and study selection</title>
<p>A search for potentially suitable articles was performed on the PubMed online databases up to September 2021, for research articles. The following keyword combinations were included in the detailed search strategy: (&#x2018;ALU&#x2019; OR &#x2018;cfDNA&#x2019;) AND (&#x2018;cancer&#x2019; OR &#x2018;tumor&#x2019;). Studies were considered for selection if they included information on ALU sequences and their potential role in the diagnosis or prognosis of different types of cancer. Studies not in English or where only the abstract was available were excluded. Initially, data extraction was carried out by two of the authors (AS and SS). The full-text articles were then obtained for more evaluation. The reference lists of all of the studies were manually checked by the authors to identify additional publications that may be of interest.</p>
<p>The studies that were determined to be eligible were as follows: a plan for an observational, assessing the relationship between ALU and the role in diagnosis or prognosis of cancer, there was enough information to assess the difference in ALU levels between the patients and the controls and between cancer stage.</p>
</sec>
<sec>
<title>Collection of data and quality assessment</title>
<p>Authors extracted data independently from each eligible study and abstracted the following information including cancer type, sample type, DNA size ratio. The data were evaluated for each group, and the main results identified.</p>
</sec>
<sec>
<title>Included studies</title>
<p>The PubMed search identified 250 articles. After the initial inclusion of 150 articles (based on title and abstract were selected for assessment), 32 articles were excluded due to not meeting the criteria for inclusion (including ALU methylation, comparison between ALU and LINE, and studies in other languages). A manual search of the references of studies on the subject yielded 15 additional articles. A total of 133 articles were included for the full text assessment, in English. The selection of the study flowchart is presented in <xref rid="f1-MCO-16-4-02519" ref-type="fig">Fig. 1</xref>.</p>
</sec>
</sec>
</sec>
<sec sec-type="Results">
<title>Results</title>
<sec>
<title/>
<sec>
<title>Included studies</title>
<p>The PubMed search initially identified 250 articles. Based on title and abstract 150 articles were selected for assessment, of which 32 articles were excluded due to not meeting the criteria for inclusion. Further manual search of the references yielded 15 additional articles. A total of 133 articles were included for the full text assessment (<xref rid="f1-MCO-16-4-02519" ref-type="fig">Fig. 1</xref>).</p>
</sec>
<sec>
<title>Overall characteristics</title>
<p>The characteristics of the studies that were included are shown in <xref rid="tI-MCO-16-4-02519" ref-type="table">Table I</xref>, which shows the number of tumor cases (16-268) and healthy controls (12-110). The subjects&#x0027; age range was 18-71 years. There were 16 studies from European countries (44.4&#x0025;), 12 from Asia (33.3&#x0025;), 6 from Africa (16.7&#x0025;), and 2 from the USA (5.6&#x0025;). These studies focused on carcinoma, including breast, lung, prostate, ovarian, endometrial, pancreatic, and thyroid cancer. To determine the value of cfDI, all of the included studies used the quantitative PCR (qPCR) method, 14 of them were evaluated in serum and 19 in plasma, 1 (in serum and plasma), 1 in tissue, and 1 in urine. cfDI was calculated as the ratio of longer DNA fragment concentrations to shorter ones in the same locus. The reference list included 35 articles, published between 2006 and 2021.</p>
</sec>
<sec>
<title>ALU as diagnostic or prognostic biomarker in cancer</title>
<p>When comparing cancer cases with control in 36 articles, in 12 studies, the levels of ALU 247 and ALU 115 were higher in patients than in controls. Thus, in total, 11 studies were retained, with cfDI higher in cancer patients than the healthy controls (an association between a higher cfDI and tumor stage, as well as high sensitivity was identified in 3 of 12 articles) and 4 had no cfDI difference.</p>
<p><xref rid="tI-MCO-16-4-02519" ref-type="table">Table I</xref> shows 11 studies had only diagnostic and 8 had only prognostic information, and 5 articles from the cancer group had significantly higher concentrations of ALU sequences and cfDI than the benign disease group. Six studies monitoring the ALU level could be applied for subsidiary cancer diagnosis, either alone or in combination with additional tumor markers.</p>
<p>For other ALU, including ALU 260/111, the cfDNA variables can serve as attractive prognostic markers for metastatic cancer during therapy. In addition, although ALU 244/83 is a potential biomarker, there are currently no extensive studies to verify this hypothesis (<xref rid="tI-MCO-16-4-02519" ref-type="table">Table I</xref>).</p>
</sec>
</sec>
</sec>
<sec sec-type="Discussion">
<title>Discussion</title>
<p>Cancer is a major global health problem due to the increasing incidence and fatality rates. An early cancer diagnosis is crucial as it can improve the chances of survival for cancer patients and decrease the mortality rate. At present, liquid biopsies are promising due to their potential advantages, including reliability, easy access, and reproducibility (<xref rid="b11-MCO-16-4-02519" ref-type="bibr">11</xref>).</p>
<p>In the present review, several studies supported the use of liquid biopsy in cancer as being innovative. To determine whether this liquid biopsy could assist the diagnostic or assessment of treatment response, 36 articles were included to identify the ALU sequences as a biomarker in cancer. The limitations of data retrieved are mostly related to the 36 articles as there is great heterogeneity in studies, it is difficult to analyse the subgroup study, the articles constitute a small sample size, little research highlighting the differences of ALU and cfDI at different stages is available, and the cut-off values vary widely between studies and were missing in other studies.</p>
<p>The present review identified the role of ALU element in cancer progression. Collectively, our data indicated that ALU elements can be used as a biomarker (<xref rid="b29-MCO-16-4-02519" ref-type="bibr">29</xref>,<xref rid="b35-MCO-16-4-02519" ref-type="bibr">35</xref>,<xref rid="b44-MCO-16-4-02519" ref-type="bibr">44</xref>,<xref rid="b47-MCO-16-4-02519" ref-type="bibr">47</xref>,<xref rid="b49-MCO-16-4-02519" ref-type="bibr">49</xref>,<xref rid="b52-MCO-16-4-02519" ref-type="bibr">52</xref>,<xref rid="b54-MCO-16-4-02519" ref-type="bibr">54</xref>,<xref rid="b63-MCO-16-4-02519" ref-type="bibr">63</xref>). The use of cfDNA, for early diagnosis, prognosis biomarkers and monitoring of therapy have been a significant advancement in clinical medicine (<xref rid="b18-MCO-16-4-02519" ref-type="bibr">18</xref>,<xref rid="b47-MCO-16-4-02519" ref-type="bibr">47</xref>,<xref rid="b51-MCO-16-4-02519" ref-type="bibr">51</xref>,<xref rid="b52-MCO-16-4-02519" ref-type="bibr">52</xref>,<xref rid="b60-MCO-16-4-02519 b61-MCO-16-4-02519 b62-MCO-16-4-02519" ref-type="bibr">60-62</xref>).</p>
<p>As mentioned previously, not all studies have confirmed that ALU levels vary with tumor development and progression, which may elucidate that cancer is a heterogeneous disease.</p>
<p>cfDI was subsequently evaluated for its usefulness in cancer diagnosis and prognosis (<xref rid="b5-MCO-16-4-02519" ref-type="bibr">5</xref>,<xref rid="b15-MCO-16-4-02519" ref-type="bibr">15</xref>,<xref rid="b31-MCO-16-4-02519" ref-type="bibr">31</xref>,<xref rid="b32-MCO-16-4-02519" ref-type="bibr">32</xref>,<xref rid="b34-MCO-16-4-02519" ref-type="bibr">34</xref>,<xref rid="b48-MCO-16-4-02519" ref-type="bibr">48</xref>,<xref rid="b58-MCO-16-4-02519" ref-type="bibr">58</xref>). Higher cfDI values in cancer patients vs. healthy controls were identified in many studies (<xref rid="b31-MCO-16-4-02519" ref-type="bibr">31</xref>,<xref rid="b34-MCO-16-4-02519" ref-type="bibr">34</xref>,<xref rid="b57-MCO-16-4-02519" ref-type="bibr">57</xref>,<xref rid="b58-MCO-16-4-02519" ref-type="bibr">58</xref>,<xref rid="b61-MCO-16-4-02519" ref-type="bibr">61</xref>). By contrast, lower cfDI was observed in different studies; however, some articles with a focus on metastatic breast cancer (<xref rid="b10-MCO-16-4-02519" ref-type="bibr">10</xref>,<xref rid="b45-MCO-16-4-02519" ref-type="bibr">45</xref>), recurrent breast cancer (<xref rid="b46-MCO-16-4-02519" ref-type="bibr">46</xref>), or first cycle of vaccination (<xref rid="b53-MCO-16-4-02519" ref-type="bibr">53</xref>,<xref rid="b62-MCO-16-4-02519" ref-type="bibr">62</xref>) were few and inconsistent.</p>
<p>There are few studies highlight of the ALU 260/111 in cancer (<xref rid="b10-MCO-16-4-02519" ref-type="bibr">10</xref>,<xref rid="b18-MCO-16-4-02519" ref-type="bibr">18</xref>,<xref rid="b29-MCO-16-4-02519" ref-type="bibr">29</xref>,<xref rid="b46-MCO-16-4-02519" ref-type="bibr">46</xref>) so is not possible to determinate the role of it as biomarker.</p>
<p>Several studies have identified an altered cfDI in patients compared to controls. However, these studies are heterogeneous, some studies showed a reduced cfDI in patients, while others reported an increased cfDI. Various hypotheses have been posited to understand the underlying reason. cfDNA from healthy individuals had 3- to 5-fold multiples of nucleosome-associated DNA length, and longer fragments than cfDNA from pancreatic cancer patients using direct visualization by gel electrophoresis (<xref rid="b64-MCO-16-4-02519" ref-type="bibr">64</xref>). Jiang <italic>et al</italic> (<xref rid="b64-MCO-16-4-02519" ref-type="bibr">64</xref>) found increased levels of shorter mitochondrial DNA molecules in the plasma of cancer patients compared to healthy people using massively parallel sequencing.</p>
<p>The present study included 36 studies with many discrepancies. This was due to the fact that they were highly heterogeneous studies and not all studies included different stages. In addition, not enough data were available for a specific cancer type and occasionally subjects were limited, there were differences in molecular methods used and source of samples could influence the results. This heterogeneity may affect clarification and whether ALU can act as a biomarker in cancer disease. Thus, further studies are needed to better clarify the role of the ALU element in specific subgroups.</p>
<p>In general, the results obtained from the present systematic review show that the expression of ALU-247 and ALU-115, and cfDI concentration is a rising trend associated with cancer and cancer stage. As a result, circulating cfDNA may be significantly related to tumor cell turnover and tumor progression, indicating biologic tumor aggressiveness. Thus, the circulating cfDI could be suitable for monitoring cancer progression. In addition, large and multicenter sample groups must be studied to corroborate the findings.</p>
<p>Liquid biopsy is becoming the focus of future tumor diagnosis and treatment research. It is less invasive and painful, can be collected in a short period of time, can be collected regardless of where the target organ is located, can be repeated continually, and can represent cancer volume in real-time. However, there are disadvantages, such as if the amount of cfDNA is insufficient, correct information may not be collected. Thus, analytical technology must be established, and the patient&#x0027;s condition or underlying disease may influence the results. Liquid biopsies, as with any other test method, involve large cohort studies to determine their efficacy and sensitivity to various disorders.</p>
<p>The limitation of the present study was mainly to mention the results of ALU and cfDI in blood samples without mentioning the <italic>in vitro</italic> information regarding ALU and cfDI. This aspect should be investigated in future work.</p>
<p>In summary, findings of the review suggest that cfDI can be a significant predictor of developing cancer in patients and could be a useful marker in a molecular, blood-based multi-marker assay.</p>
<p>The current systematic review assessed the total ALU sequence levels and its index are promising biomarkers for the purpose of investigation or prognosis of cancer. However, because of the heterogeneity between studies, the difference of ALU value in different cancers (type or stage) therefore makes it difficult to compare between different types of cancer. Further studies and meta-analyses are needed for the final conclusion to explore the diagnostic role of ALU in malignant diseases, especially when combined with other cancer biomarkers.</p>
</sec>
</body>
<back>
<ack>
<title>Acknowledgements</title>
<p>The authors would like to express deep thanks to the University of Anbar, College of Science, Department of Biotechnology for their assistance.</p>
</ack>
<sec sec-type="data-availability">
<title>Availability of data and materials</title>
<p>The data generated in the present study are included in the figures and/or tables of this article.</p>
</sec>
<sec>
<title>Authors&#x0027; contributions</title>
<p>SAS, AMA-R and AAS conceived and planned the review. Data extraction was carried out by SAS and AAS. SAS, AMA-R and AAS evaluated the articles, manually checked references and wrote the review. All authors have read and approved the final manuscript. Data authentication is not applicable.</p>
</sec>
<sec>
<title>Ethics approval and consent to participate</title>
<p>Not applicable for systematic reviews.</p>
</sec>
<sec>
<title>Patient consent for publication</title>
<p>Not applicable.</p>
</sec>
<sec sec-type="COI-statement">
<title>Competing interests</title>
<p>The authors declare that they have no competing interests.</p>
</sec>
<ref-list>
<title>References</title>
<ref id="b1-MCO-16-4-02519"><label>1</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Ferlay</surname><given-names>J</given-names></name><name><surname>Colombet</surname><given-names>M</given-names></name><name><surname>Soerjomataram</surname><given-names>I</given-names></name><name><surname>Mathers</surname><given-names>C</given-names></name><name><surname>Parkin</surname><given-names>DM</given-names></name><name><surname>Pi&#x00F1;eros</surname><given-names>M</given-names></name><name><surname>Znaor</surname><given-names>A</given-names></name><name><surname>Bray</surname><given-names>F</given-names></name></person-group><article-title>Estimating the global cancer incidence and mortality in 2018: GLOBOCAN sources and methods</article-title><source>Int J Cancer</source><volume>144</volume><fpage>1941</fpage><lpage>1953</lpage><year>2019</year><pub-id pub-id-type="pmid">30350310</pub-id><pub-id pub-id-type="doi">10.1002/ijc.31937</pub-id></element-citation></ref>
<ref id="b2-MCO-16-4-02519"><label>2</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Parkin</surname><given-names>DM</given-names></name><name><surname>Pisani</surname><given-names>P</given-names></name><name><surname>Ferlay</surname><given-names>J</given-names></name></person-group><article-title>Global Cancer Statistics</article-title><source>CA Cancer J Clin</source><volume>49</volume><fpage>33</fpage><lpage>640. 1</lpage><year>1999</year><pub-id pub-id-type="pmid">10200776</pub-id><pub-id pub-id-type="doi">10.3322/canjclin.49.1.33</pub-id></element-citation></ref>
<ref id="b3-MCO-16-4-02519"><label>3</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Li</surname><given-names>Y</given-names></name><name><surname>Gu</surname><given-names>M</given-names></name><name><surname>Jing</surname><given-names>F</given-names></name><name><surname>Cai</surname><given-names>S</given-names></name><name><surname>Bao</surname><given-names>C</given-names></name><name><surname>Wang</surname><given-names>J</given-names></name><name><surname>Jin</surname><given-names>M</given-names></name><name><surname>Chen</surname><given-names>K</given-names></name></person-group><article-title>Association between physical activity and all cancer mortality: Dose-response meta-analysis of cohort studies</article-title><source>Int J Cancer</source><volume>138</volume><fpage>818</fpage><lpage>832</lpage><year>2016</year><pub-id pub-id-type="pmid">26317834</pub-id><pub-id pub-id-type="doi">10.1002/ijc.29828</pub-id></element-citation></ref>
<ref id="b4-MCO-16-4-02519"><label>4</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Ye</surname><given-names>D</given-names></name><name><surname>Jiang</surname><given-names>D</given-names></name><name><surname>Zhang</surname><given-names>X</given-names></name><name><surname>Mao</surname><given-names>Y</given-names></name></person-group><article-title>Alu methylation and risk of cancer: A meta-analysis</article-title><source>Am J Med Sci</source><volume>359</volume><fpage>271</fpage><lpage>280</lpage><year>2020</year><pub-id pub-id-type="pmid">32268941</pub-id><pub-id pub-id-type="doi">10.1016/j.amjms.2020.03.002</pub-id></element-citation></ref>
<ref id="b5-MCO-16-4-02519"><label>5</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Arko-Boham</surname><given-names>B</given-names></name><name><surname>Aryee</surname><given-names>NA</given-names></name><name><surname>Blay</surname><given-names>RM</given-names></name><name><surname>Owusu</surname><given-names>EDA</given-names></name><name><surname>Tagoe</surname><given-names>EA</given-names></name><name><surname>Doris Shackie</surname><given-names>ES</given-names></name><name><surname>Debrah</surname><given-names>AB</given-names></name><name><surname>Adu-Aryee</surname><given-names>NA</given-names></name></person-group><article-title>Circulating cell-free DNA integrity as a diagnostic and prognostic marker for breast and prostate cancers</article-title><source>Cancer Genet</source><volume>235-236</volume><fpage>65</fpage><lpage>71</lpage><year>2019</year><pub-id pub-id-type="pmid">31105051</pub-id><pub-id pub-id-type="doi">10.1016/j.cancergen.2019.04.062</pub-id></element-citation></ref>
<ref id="b6-MCO-16-4-02519"><label>6</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Pan</surname><given-names>Y</given-names></name><name><surname>Liu</surname><given-names>G</given-names></name><name><surname>Zhou</surname><given-names>F</given-names></name><name><surname>Su</surname><given-names>B</given-names></name><name><surname>Li</surname><given-names>Y</given-names></name></person-group><article-title>DNA methylation profiles in cancer diagnosis and therapeutics</article-title><source>Clin Exp Med</source><volume>18</volume><fpage>1</fpage><lpage>14</lpage><year>2018</year><pub-id pub-id-type="pmid">28752221</pub-id><pub-id pub-id-type="doi">10.1007/s10238-017-0467-0</pub-id></element-citation></ref>
<ref id="b7-MCO-16-4-02519"><label>7</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Schwarzenbach</surname><given-names>H</given-names></name><name><surname>Hoon</surname><given-names>DS</given-names></name><name><surname>Pantel</surname><given-names>K</given-names></name></person-group><article-title>Cell-free nucleic acids as biomarkers in cancer patients</article-title><source>Nat Rev Cancer</source><volume>11</volume><fpage>426</fpage><lpage>437</lpage><year>2011</year><pub-id pub-id-type="pmid">21562580</pub-id><pub-id pub-id-type="doi">10.1038/nrc3066</pub-id></element-citation></ref>
<ref id="b8-MCO-16-4-02519"><label>8</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Shen</surname><given-names>J</given-names></name><name><surname>Stass</surname><given-names>SA</given-names></name><name><surname>Jiang</surname><given-names>F</given-names></name></person-group><article-title>MicroRNAs as potential biomarkers in human solid tumors</article-title><source>Cancer Lett</source><volume>329</volume><fpage>125</fpage><lpage>136</lpage><year>2013</year><pub-id pub-id-type="pmid">23196059</pub-id><pub-id pub-id-type="doi">10.1016/j.canlet.2012.11.001</pub-id></element-citation></ref>
<ref id="b9-MCO-16-4-02519"><label>9</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Paterlini-Brechot</surname><given-names>P</given-names></name><name><surname>Benali</surname><given-names>NL</given-names></name></person-group><article-title>Circulating tumor cells (CTC) detection: Clinical impact and future directions</article-title><source>Cancer Lett</source><volume>253</volume><fpage>180</fpage><lpage>204</lpage><year>2007</year><pub-id pub-id-type="pmid">17314005</pub-id><pub-id pub-id-type="doi">10.1016/j.canlet.2006.12.014</pub-id></element-citation></ref>
<ref id="b10-MCO-16-4-02519"><label>10</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Madhavan</surname><given-names>D</given-names></name><name><surname>Wallwiener</surname><given-names>M</given-names></name><name><surname>Bents</surname><given-names>K</given-names></name><name><surname>Zucknick</surname><given-names>M</given-names></name><name><surname>Nees</surname><given-names>J</given-names></name><name><surname>Schott</surname><given-names>S</given-names></name><name><surname>Cuk</surname><given-names>K</given-names></name><name><surname>Riethdorf</surname><given-names>S</given-names></name><name><surname>Trumpp</surname><given-names>A</given-names></name><name><surname>Pantel</surname><given-names>K</given-names></name><etal/></person-group><article-title>Plasma DNA integrity as a biomarker for primary and metastatic breast cancer and potential marker for early diagnosis</article-title><source>Breast Cancer Res Treat</source><volume>146</volume><fpage>163</fpage><lpage>174</lpage><year>2014</year><pub-id pub-id-type="pmid">24838941</pub-id><pub-id pub-id-type="doi">10.1007/s10549-014-2946-2</pub-id></element-citation></ref>
<ref id="b11-MCO-16-4-02519"><label>11</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Cuk</surname><given-names>K</given-names></name><name><surname>Zucknick</surname><given-names>M</given-names></name><name><surname>Heil</surname><given-names>J</given-names></name><name><surname>Madhavan</surname><given-names>D</given-names></name><name><surname>Schott</surname><given-names>S</given-names></name><name><surname>Turchinovich</surname><given-names>A</given-names></name><name><surname>Arlt</surname><given-names>D</given-names></name><name><surname>Rath</surname><given-names>M</given-names></name><name><surname>Sohn</surname><given-names>C</given-names></name><name><surname>Benner</surname><given-names>A</given-names></name><etal/></person-group><article-title>Circulating microRNAs in plasma as early detection markers for breast cancer</article-title><source>Int J Cancer</source><volume>132</volume><fpage>1602</fpage><lpage>1612</lpage><year>2013</year><pub-id pub-id-type="pmid">22927033</pub-id><pub-id pub-id-type="doi">10.1002/ijc.27799</pub-id></element-citation></ref>
<ref id="b12-MCO-16-4-02519"><label>12</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Cuk</surname><given-names>K</given-names></name><name><surname>Zucknick</surname><given-names>M</given-names></name><name><surname>Madhavan</surname><given-names>D</given-names></name><name><surname>Schott</surname><given-names>S</given-names></name><name><surname>Golatta</surname><given-names>M</given-names></name><name><surname>Heil</surname><given-names>J</given-names></name><name><surname>Marm&#x00E9;</surname><given-names>F</given-names></name><name><surname>Turchinovich</surname><given-names>A</given-names></name><name><surname>Sinn</surname><given-names>P</given-names></name><name><surname>Sohn</surname><given-names>C</given-names></name><etal/></person-group><article-title>Plasma MicroRNA panel for minimally invasive detection of breast cancer</article-title><source>PLoS One</source><volume>8</volume><issue>e76729</issue><year>2013</year><pub-id pub-id-type="pmid">24194846</pub-id><pub-id pub-id-type="doi">10.1371/journal.pone.0076729</pub-id></element-citation></ref>
<ref id="b13-MCO-16-4-02519"><label>13</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Madhavan</surname><given-names>D</given-names></name><name><surname>Zucknick</surname><given-names>M</given-names></name><name><surname>Wallwiener</surname><given-names>M</given-names></name><name><surname>Cuk</surname><given-names>K</given-names></name><name><surname>Modugno</surname><given-names>C</given-names></name><name><surname>Scharpff</surname><given-names>M</given-names></name><name><surname>Schott</surname><given-names>S</given-names></name><name><surname>Heil</surname><given-names>J</given-names></name><name><surname>Turchinovich</surname><given-names>A</given-names></name><name><surname>Yang</surname><given-names>R</given-names></name><etal/></person-group><article-title>Circulating miRNAs as surrogate markers for circulating tumor cells and prognostic markers in metastatic breast cancer</article-title><source>Clin Cancer Res</source><volume>18</volume><fpage>5972</fpage><lpage>5982</lpage><year>2012</year><pub-id pub-id-type="pmid">22952344</pub-id><pub-id pub-id-type="doi">10.1158/1078-0432.CCR-12-1407</pub-id></element-citation></ref>
<ref id="b14-MCO-16-4-02519"><label>14</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Tuchalska-Czuro&#x0144;</surname><given-names>J</given-names></name><name><surname>Lenart</surname><given-names>J</given-names></name><name><surname>Augustyniak</surname><given-names>J</given-names></name><name><surname>Durlik</surname><given-names>M</given-names></name></person-group><article-title>Clinical value of tissue DNA integrity index in pancreatic cancer</article-title><source>Surgeon</source><volume>18</volume><fpage>269</fpage><lpage>279</lpage><year>2020</year><pub-id pub-id-type="pmid">32156475</pub-id><pub-id pub-id-type="doi">10.1016/j.surge.2019.10.008</pub-id></element-citation></ref>
<ref id="b15-MCO-16-4-02519"><label>15</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Chudasama</surname><given-names>DY</given-names></name><name><surname>Aladag</surname><given-names>Z</given-names></name><name><surname>Felicien</surname><given-names>MI</given-names></name><name><surname>Hall</surname><given-names>M</given-names></name><name><surname>Beeson</surname><given-names>J</given-names></name><name><surname>Asadi</surname><given-names>N</given-names></name><name><surname>Gidron</surname><given-names>Y</given-names></name><name><surname>Karteris</surname><given-names>E</given-names></name><name><surname>Anikin</surname><given-names>VB</given-names></name></person-group><article-title>Prognostic value of the DNA integrity index in patients with malignant lung tumors</article-title><source>Oncotarget</source><volume>9</volume><fpage>21281</fpage><lpage>21288</lpage><year>2018</year><pub-id pub-id-type="pmid">29765538</pub-id><pub-id pub-id-type="doi">10.18632/oncotarget.25086</pub-id></element-citation></ref>
<ref id="b16-MCO-16-4-02519"><label>16</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Li</surname><given-names>M</given-names></name><name><surname>Jia</surname><given-names>Y</given-names></name><name><surname>Xu</surname><given-names>J</given-names></name><name><surname>Cheng</surname><given-names>X</given-names></name><name><surname>Xu</surname><given-names>C</given-names></name></person-group><article-title>Assessment of the circulating cell-free DNA marker association with diagnosis and prognostic prediction in patients with lymphoma: A single-center experience</article-title><source>Ann Hematol</source><volume>96</volume><fpage>1343</fpage><lpage>1351</lpage><year>2017</year><pub-id pub-id-type="pmid">28623396</pub-id><pub-id pub-id-type="doi">10.1007/s00277-017-3043-5</pub-id></element-citation></ref>
<ref id="b17-MCO-16-4-02519"><label>17</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>El Messaoudi</surname><given-names>S</given-names></name><name><surname>Mouliere</surname><given-names>F</given-names></name><name><surname>Du Manoir</surname><given-names>S</given-names></name><name><surname>Bascoul-Mollevi</surname><given-names>C</given-names></name><name><surname>Gillet</surname><given-names>B</given-names></name><name><surname>Nouaille</surname><given-names>M</given-names></name><name><surname>Fiess</surname><given-names>C</given-names></name><name><surname>Crapez</surname><given-names>E</given-names></name><name><surname>Bibeau</surname><given-names>F</given-names></name><name><surname>Theillet</surname><given-names>C</given-names></name><etal/></person-group><article-title>Circulating DNA as a strong multimarker prognostic tool for metastatic colorectal cancer patient management care</article-title><source>Clin Cancer Res</source><volume>22</volume><fpage>3067</fpage><lpage>3077</lpage><year>2016</year><pub-id pub-id-type="pmid">26847055</pub-id><pub-id pub-id-type="doi">10.1158/1078-0432.CCR-15-0297</pub-id></element-citation></ref>
<ref id="b18-MCO-16-4-02519"><label>18</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Cheng</surname><given-names>J</given-names></name><name><surname>Holland-Letz</surname><given-names>T</given-names></name><name><surname>Wallwiener</surname><given-names>M</given-names></name><name><surname>Surowy</surname><given-names>H</given-names></name><name><surname>Cuk</surname><given-names>K</given-names></name><name><surname>Schott</surname><given-names>S</given-names></name><name><surname>Trumpp</surname><given-names>A</given-names></name><name><surname>Pantel</surname><given-names>K</given-names></name><name><surname>Sohn</surname><given-names>C</given-names></name><name><surname>Schneeweiss</surname><given-names>A</given-names></name><name><surname>Burwinkel</surname><given-names>B</given-names></name></person-group><article-title>Circulating free DNA integrity and concentration as independent prognostic markers in metastatic breast cancer</article-title><source>Breast Cancer Res Treat</source><volume>169</volume><fpage>69</fpage><lpage>82</lpage><year>2018</year><pub-id pub-id-type="pmid">29340881</pub-id><pub-id pub-id-type="doi">10.1007/s10549-018-4666-5</pub-id></element-citation></ref>
<ref id="b19-MCO-16-4-02519"><label>19</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Habeeb</surname><given-names>WH</given-names></name><name><surname>Suleiman</surname><given-names>AA</given-names></name><name><surname>Al-Hitawee</surname><given-names>HT</given-names></name></person-group><article-title>Exploration of the beta-actin DNA integrity index as early genetic marker of presence of breast cancer</article-title><source>Electron J Gen Med</source><volume>17</volume><issue>em188</issue><year>2020</year></element-citation></ref>
<ref id="b20-MCO-16-4-02519"><label>20</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Akca</surname><given-names>H</given-names></name><name><surname>Demiray</surname><given-names>A</given-names></name><name><surname>Yaren</surname><given-names>A</given-names></name><name><surname>Bir</surname><given-names>F</given-names></name><name><surname>Koseler</surname><given-names>A</given-names></name><name><surname>Iwakawa</surname><given-names>R</given-names></name><name><surname>Bagci</surname><given-names>G</given-names></name><name><surname>Yokota</surname><given-names>J</given-names></name></person-group><article-title>Utility of serum DNA and pyrosequencing for the detection of EGFR mutations in non-small cell lung cancer</article-title><source>Cancer Genet</source><volume>206</volume><fpage>73</fpage><lpage>80</lpage><year>2013</year><pub-id pub-id-type="pmid">23491080</pub-id><pub-id pub-id-type="doi">10.1016/j.cancergen.2013.01.005</pub-id></element-citation></ref>
<ref id="b21-MCO-16-4-02519"><label>21</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Iqbal</surname><given-names>S</given-names></name><name><surname>Vishnubhatla</surname><given-names>S</given-names></name><name><surname>Raina</surname><given-names>V</given-names></name><name><surname>Sharma</surname><given-names>S</given-names></name><name><surname>Gogia</surname><given-names>A</given-names></name><name><surname>Deo</surname><given-names>SS</given-names></name><name><surname>Mathur</surname><given-names>S</given-names></name><name><surname>Shukla</surname><given-names>NK</given-names></name></person-group><article-title>Circulating cell-free DNA and its integrity as a prognostic marker for breast cancer</article-title><source>Springerplus</source><volume>4</volume><issue>265</issue><year>2015</year><pub-id pub-id-type="pmid">26090312</pub-id><pub-id pub-id-type="doi">10.1186/s40064-015-1071-y</pub-id></element-citation></ref>
<ref id="b22-MCO-16-4-02519"><label>22</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Mandel</surname><given-names>P</given-names></name><name><surname>Metais</surname><given-names>P</given-names></name></person-group><article-title>Nuclear Acids In Human Blood Plasma</article-title><source>C R Seances Soc Biol Fil</source><volume>14</volume><fpage>241</fpage><lpage>243</lpage><year>1948</year><pub-id pub-id-type="pmid">18875018</pub-id><comment>(In French)</comment></element-citation></ref>
<ref id="b23-MCO-16-4-02519"><label>23</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Tan</surname><given-names>EM</given-names></name><name><surname>Schur</surname><given-names>PH</given-names></name><name><surname>Carr</surname><given-names>RI</given-names></name><name><surname>Kunkel</surname><given-names>HG</given-names></name></person-group><article-title>Deoxybonucleic acid (DNA) and antibodies to DNA in the serum of patients with systemic lupus erythematosus</article-title><source>J Clin Invest</source><volume>45</volume><fpage>1732</fpage><lpage>1740</lpage><year>1966</year><pub-id pub-id-type="pmid">4959277</pub-id><pub-id pub-id-type="doi">10.1172/JCI105479</pub-id></element-citation></ref>
<ref id="b24-MCO-16-4-02519"><label>24</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Leon</surname><given-names>SA</given-names></name><name><surname>Shapiro</surname><given-names>B</given-names></name><name><surname>Sklaroff</surname><given-names>DM</given-names></name><name><surname>Yaros</surname><given-names>MJ</given-names></name></person-group><article-title>Free DNA in the serum of cancer patients and the effect of therapy</article-title><source>Cancer Res</source><volume>37</volume><fpage>646</fpage><lpage>650</lpage><year>1977</year><pub-id pub-id-type="pmid">837366</pub-id></element-citation></ref>
<ref id="b25-MCO-16-4-02519"><label>25</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Fleischhacker</surname><given-names>M</given-names></name><name><surname>Schmidt</surname><given-names>B</given-names></name></person-group><article-title>Circulating nucleic acids (CNAs) and cancer-A survey</article-title><source>Biochim Biophys Acta</source><volume>1775</volume><fpage>181</fpage><lpage>232</lpage><year>2007</year><pub-id pub-id-type="pmid">17137717</pub-id><pub-id pub-id-type="doi">10.1016/j.bbcan.2006.10.001</pub-id></element-citation></ref>
<ref id="b26-MCO-16-4-02519"><label>26</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Jahr</surname><given-names>S</given-names></name><name><surname>Hentze</surname><given-names>H</given-names></name><name><surname>Englisch</surname><given-names>S</given-names></name><name><surname>Hardt</surname><given-names>D</given-names></name><name><surname>Fackelmayer</surname><given-names>FO</given-names></name><name><surname>Hesch</surname><given-names>RD</given-names></name><name><surname>Knippers</surname><given-names>R</given-names></name></person-group><article-title>DNA fragments in the blood plasma of cancer patients: Quantitations and evidence for their origin from apoptotic and necrotic cells</article-title><source>Cancer Res</source><volume>61</volume><fpage>1659</fpage><lpage>1665</lpage><year>2001</year><pub-id pub-id-type="pmid">11245480</pub-id></element-citation></ref>
<ref id="b27-MCO-16-4-02519"><label>27</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Umetani</surname><given-names>N</given-names></name><name><surname>Giuliano</surname><given-names>AE</given-names></name><name><surname>Hiramatsu</surname><given-names>SH</given-names></name><name><surname>Amersi</surname><given-names>F</given-names></name><name><surname>Nakagawa</surname><given-names>T</given-names></name><name><surname>Martino</surname><given-names>S</given-names></name><name><surname>Hoon</surname><given-names>DSB</given-names></name></person-group><article-title>Prediction of breast tumor progression by integrity of free circulating DNA in serum</article-title><source>J Clin Oncol</source><volume>24</volume><fpage>4270</fpage><lpage>4276</lpage><year>2006</year><pub-id pub-id-type="pmid">16963729</pub-id><pub-id pub-id-type="doi">10.1200/JCO.2006.05.9493</pub-id></element-citation></ref>
<ref id="b28-MCO-16-4-02519"><label>28</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Diehl</surname><given-names>F</given-names></name><name><surname>Li</surname><given-names>M</given-names></name><name><surname>Dressman</surname><given-names>D</given-names></name><name><surname>He</surname><given-names>Y</given-names></name><name><surname>Shen</surname><given-names>D</given-names></name><name><surname>Szabo</surname><given-names>S</given-names></name><name><surname>Diaz</surname><given-names>LA Jr</given-names></name><name><surname>Goodman</surname><given-names>SN</given-names></name><name><surname>David</surname><given-names>KA</given-names></name><name><surname>Juhl</surname><given-names>H</given-names></name><etal/></person-group><article-title>Detection and quantification of mutations in the plasma of patients with colorectal tumors</article-title><source>Proc Natl Acad Sci USA</source><volume>102</volume><fpage>16368</fpage><lpage>16373</lpage><year>2005</year><pub-id pub-id-type="pmid">16258065</pub-id><pub-id pub-id-type="doi">10.1073/pnas.0507904102</pub-id></element-citation></ref>
<ref id="b29-MCO-16-4-02519"><label>29</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Stamenkovic</surname><given-names>S</given-names></name><name><surname>Cheng</surname><given-names>J</given-names></name><name><surname>Surowy</surname><given-names>H</given-names></name><name><surname>Burwinkel</surname><given-names>B</given-names></name><name><surname>G&#x00FC;ndert</surname><given-names>M</given-names></name></person-group><article-title>Circulating cell-free DNA variables as marker of ovarian cancer patients: A pilot study</article-title><source>Cancer Biomark</source><volume>28</volume><fpage>159</fpage><lpage>167</lpage><year>2020</year><pub-id pub-id-type="pmid">32176629</pub-id><pub-id pub-id-type="doi">10.3233/CBM-191018</pub-id></element-citation></ref>
<ref id="b30-MCO-16-4-02519"><label>30</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Hao</surname><given-names>TB</given-names></name><name><surname>Shi</surname><given-names>W</given-names></name><name><surname>Shen</surname><given-names>XJ</given-names></name><name><surname>Shen</surname><given-names>XJ</given-names></name><name><surname>Qi</surname><given-names>J</given-names></name><name><surname>Wu</surname><given-names>XH</given-names></name><name><surname>Wu</surname><given-names>Y</given-names></name><name><surname>Tang</surname><given-names>YY</given-names></name><name><surname>Ju</surname><given-names>SQ</given-names></name></person-group><article-title>Circulating cell-free DNA in serum as a biomarker for diagnosis and prognostic prediction of colorectal cancer</article-title><source>Br J Cancer</source><volume>111</volume><fpage>1482</fpage><lpage>1489</lpage><year>2014</year><pub-id pub-id-type="pmid">25157833</pub-id><pub-id pub-id-type="doi">10.1038/bjc.2014.470</pub-id></element-citation></ref>
<ref id="b31-MCO-16-4-02519"><label>31</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Leng</surname><given-names>S</given-names></name><name><surname>Zheng</surname><given-names>J</given-names></name><name><surname>Jin</surname><given-names>Y</given-names></name><name><surname>Zhang</surname><given-names>H</given-names></name><name><surname>Zhu</surname><given-names>Y</given-names></name><name><surname>Wu</surname><given-names>J</given-names></name><name><surname>Xu</surname><given-names>Y</given-names></name><name><surname>Zhang</surname><given-names>P</given-names></name></person-group><article-title>Plasma cell-free DNA level and its integrity as biomarkers to distinguish non-small cell lung cancer from tuberculosis</article-title><source>Clin Chim Acta</source><volume>477</volume><fpage>160</fpage><lpage>165</lpage><year>2018</year><pub-id pub-id-type="pmid">29113814</pub-id><pub-id pub-id-type="doi">10.1016/j.cca.2017.11.003</pub-id></element-citation></ref>
<ref id="b32-MCO-16-4-02519"><label>32</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Vizza</surname><given-names>E</given-names></name><name><surname>Corrado</surname><given-names>G</given-names></name><name><surname>De Angeli</surname><given-names>M</given-names></name><name><surname>Carosi</surname><given-names>M</given-names></name><name><surname>Mancini</surname><given-names>E</given-names></name><name><surname>Baiocco</surname><given-names>E</given-names></name><name><surname>Chiofalo</surname><given-names>B</given-names></name><name><surname>Patrizi</surname><given-names>L</given-names></name><name><surname>Zampa</surname><given-names>A</given-names></name><name><surname>Piaggio</surname><given-names>G</given-names></name><name><surname>Cicchillitti</surname><given-names>L</given-names></name></person-group><article-title>Serum DNA integrity index as a potential molecular biomarker in endometrial cancer</article-title><source>J Exp Clin Cancer Res</source><volume>37</volume><issue>16</issue><year>2018</year><pub-id pub-id-type="pmid">29382392</pub-id><pub-id pub-id-type="doi">10.1186/s13046-018-0688-4</pub-id></element-citation></ref>
<ref id="b33-MCO-16-4-02519"><label>33</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Thakur</surname><given-names>S</given-names></name><name><surname>Tobey</surname><given-names>A</given-names></name><name><surname>Daley</surname><given-names>B</given-names></name><name><surname>Auh</surname><given-names>S</given-names></name><name><surname>Walter</surname><given-names>M</given-names></name><name><surname>Patel</surname><given-names>D</given-names></name><name><surname>Nilubol</surname><given-names>N</given-names></name><name><surname>Kebebew</surname><given-names>E</given-names></name><name><surname>Patel</surname><given-names>A</given-names></name><name><surname>Jensen</surname><given-names>K</given-names></name><etal/></person-group><article-title>Limited utility of circulating cell-free dna integrity as a diagnostic tool for differentiating between malignant and benign thyroid nodules with indeterminate cytology (Bethesda Category III)</article-title><source>Front Oncol</source><volume>9</volume><issue>905</issue><year>2019</year><pub-id pub-id-type="pmid">31620364</pub-id><pub-id pub-id-type="doi">10.3389/fonc.2019.00905</pub-id></element-citation></ref>
<ref id="b34-MCO-16-4-02519"><label>34</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Park</surname><given-names>MK</given-names></name><name><surname>Lee</surname><given-names>JC</given-names></name><name><surname>Lee</surname><given-names>JW</given-names></name><name><surname>Hwang</surname><given-names>SJ</given-names></name></person-group><article-title>Alu cell-free DNA concentration, Alu index, and LINE-1 hypomethylation as a cancer predictor</article-title><source>Clin Biochem</source><volume>94</volume><fpage>67</fpage><lpage>73</lpage><year>2021</year><pub-id pub-id-type="pmid">33901468</pub-id><pub-id pub-id-type="doi">10.1016/j.clinbiochem.2021.04.021</pub-id></element-citation></ref>
<ref id="b35-MCO-16-4-02519"><label>35</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Salem</surname><given-names>R</given-names></name><name><surname>Ahmed</surname><given-names>R</given-names></name><name><surname>Shaheen</surname><given-names>K</given-names></name><name><surname>Abdalmegeed</surname><given-names>M</given-names></name><name><surname>Hassan</surname><given-names>H</given-names></name></person-group><article-title>DNA integrity index as a potential molecular biomarker in colorectal cancer</article-title><source>Egypt J Med Hum Genet</source><volume>21</volume><issue>38</issue><year>2020</year></element-citation></ref>
<ref id="b36-MCO-16-4-02519"><label>36</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Lander</surname><given-names>ES</given-names></name><name><surname>Linton</surname><given-names>LM</given-names></name><name><surname>Birren</surname><given-names>B</given-names></name><name><surname>Nusbaum</surname><given-names>C</given-names></name><name><surname>Zody</surname><given-names>MC</given-names></name><name><surname>Baldwin</surname><given-names>J</given-names></name><name><surname>Devon</surname><given-names>K</given-names></name><name><surname>Dewar</surname><given-names>K</given-names></name><name><surname>Doyle</surname><given-names>M</given-names></name><name><surname>FitzHugh</surname><given-names>W</given-names></name><etal/></person-group><article-title>Initial sequencing and analysis of the human genome</article-title><source>Nature</source><volume>409</volume><fpage>860</fpage><lpage>921</lpage><year>2001</year><pub-id pub-id-type="pmid">11237011</pub-id><pub-id pub-id-type="doi">10.1038/35057062</pub-id></element-citation></ref>
<ref id="b37-MCO-16-4-02519"><label>37</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Cheng</surname><given-names>J</given-names></name><name><surname>Tang</surname><given-names>Q</given-names></name><name><surname>Cao</surname><given-names>X</given-names></name><name><surname>Burwinkel</surname><given-names>B</given-names></name></person-group><article-title>Cell-free circulating DNA integrity based on peripheral blood as a biomarker for diagnosis of cancer: A systematic review</article-title><source>Cancer Epidemiol Biomarkers Prev</source><volume>26</volume><fpage>1595</fpage><lpage>1602</lpage><year>2017</year><pub-id pub-id-type="pmid">28830871</pub-id><pub-id pub-id-type="doi">10.1158/1055-9965.EPI-17-0502</pub-id></element-citation></ref>
<ref id="b38-MCO-16-4-02519"><label>38</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Umetani</surname><given-names>N</given-names></name><name><surname>Kim</surname><given-names>J</given-names></name><name><surname>Hiramatsu</surname><given-names>S</given-names></name><name><surname>Reber</surname><given-names>HA</given-names></name><name><surname>Hines</surname><given-names>OJ</given-names></name><name><surname>Bilchik</surname><given-names>AJ</given-names></name><name><surname>Hoon</surname><given-names>DSB</given-names></name></person-group><article-title>Increased integrity of free circulating DNA in sera of patients with colorectal or periampullary cancer: Direct quantitative PCR for ALU repeats</article-title><source>Clin Chem</source><volume>52</volume><fpage>1062</fpage><lpage>1069</lpage><year>2006</year><pub-id pub-id-type="pmid">16723681</pub-id><pub-id pub-id-type="doi">10.1373/clinchem.2006.068577</pub-id></element-citation></ref>
<ref id="b39-MCO-16-4-02519"><label>39</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Wang</surname><given-names>BG</given-names></name><name><surname>Huang</surname><given-names>HY</given-names></name><name><surname>Chen</surname><given-names>YC</given-names></name><name><surname>Bristow</surname><given-names>RE</given-names></name><name><surname>Kassauei</surname><given-names>K</given-names></name><name><surname>Cheng</surname><given-names>CC</given-names></name><name><surname>Roden</surname><given-names>R</given-names></name><name><surname>Sokoll</surname><given-names>LJ</given-names></name><name><surname>Chan</surname><given-names>DW</given-names></name><name><surname>Shih</surname><given-names>IeM</given-names></name></person-group><article-title>Increased plasma DNA integrity in cancer patients</article-title><source>Cancer Res</source><volume>63</volume><fpage>3966</fpage><lpage>3968</lpage><year>2003</year><pub-id pub-id-type="pmid">12873992</pub-id></element-citation></ref>
<ref id="b40-MCO-16-4-02519"><label>40</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Holdenrieder</surname><given-names>S</given-names></name><name><surname>Burges</surname><given-names>A</given-names></name><name><surname>Reich</surname><given-names>O</given-names></name><name><surname>Spelsberg</surname><given-names>FW</given-names></name><name><surname>Stieber</surname><given-names>P</given-names></name></person-group><article-title>DNA integrity in plasma and serum of patients with malignant and benign diseases</article-title><source>Ann N Y Acad Sci</source><volume>1137</volume><fpage>162</fpage><lpage>170</lpage><year>2008</year><pub-id pub-id-type="pmid">18837942</pub-id><pub-id pub-id-type="doi">10.1196/annals.1448.013</pub-id></element-citation></ref>
<ref id="b41-MCO-16-4-02519"><label>41</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Boddy</surname><given-names>JL</given-names></name><name><surname>Gal</surname><given-names>S</given-names></name><name><surname>Malone</surname><given-names>PR</given-names></name><name><surname>Shaida</surname><given-names>N</given-names></name><name><surname>Wainscoat</surname><given-names>JS</given-names></name><name><surname>Harris</surname><given-names>AL</given-names></name></person-group><article-title>The role of cell-free DNA size distribution in the management of prostate cancer</article-title><source>Oncol Res</source><volume>16</volume><fpage>35</fpage><lpage>41</lpage><year>2006</year><pub-id pub-id-type="pmid">16783966</pub-id><pub-id pub-id-type="doi">10.3727/000000006783981297</pub-id></element-citation></ref>
<ref id="b42-MCO-16-4-02519"><label>42</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Schmidt</surname><given-names>B</given-names></name><name><surname>Weickmann</surname><given-names>S</given-names></name><name><surname>Witt</surname><given-names>C</given-names></name><name><surname>Fleischhacker</surname><given-names>M</given-names></name></person-group><article-title>Integrity of cell-free plasma DNA in patients with lung cancer and nonmalignant lung disease</article-title><source>Ann N Y Acad Sci</source><volume>1137</volume><fpage>207</fpage><lpage>213</lpage><year>2008</year><pub-id pub-id-type="pmid">18837948</pub-id><pub-id pub-id-type="doi">10.1196/annals.1448.034</pub-id></element-citation></ref>
<ref id="b43-MCO-16-4-02519"><label>43</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Agostini</surname><given-names>M</given-names></name><name><surname>Enzo</surname><given-names>MV</given-names></name><name><surname>Bedin</surname><given-names>C</given-names></name><name><surname>Belardinelli</surname><given-names>V</given-names></name><name><surname>Goldin</surname><given-names>E</given-names></name><name><surname>Del Bianco</surname><given-names>P</given-names></name><name><surname>Maschietto</surname><given-names>E</given-names></name><name><surname>D&#x0027;Angelo</surname><given-names>E</given-names></name><name><surname>Izzi</surname><given-names>L</given-names></name><name><surname>Saccani</surname><given-names>A</given-names></name><etal/></person-group><article-title>Circulating cell-free DNA: A promising marker of regional lymphonode metastasis in breast cancer patients</article-title><source>Cancer Biomark</source><volume>11</volume><fpage>89</fpage><lpage>98</lpage><year>2012</year><pub-id pub-id-type="pmid">23011155</pub-id><pub-id pub-id-type="doi">10.3233/CBM-2012-0263</pub-id></element-citation></ref>
<ref id="b44-MCO-16-4-02519"><label>44</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Lehner</surname><given-names>J</given-names></name><name><surname>St&#x00F6;tzer</surname><given-names>OJ</given-names></name><name><surname>Fersching</surname><given-names>D</given-names></name><name><surname>Nagel</surname><given-names>D</given-names></name><name><surname>Holdenrieder</surname><given-names>S</given-names></name></person-group><article-title>Circulating plasma DNA and DNA integrity in breast cancer patients undergoing neoadjuvant chemotherapy</article-title><source>Clin Chim Acta</source><volume>425</volume><fpage>206</fpage><lpage>211</lpage><year>2013</year><pub-id pub-id-type="pmid">23916787</pub-id><pub-id pub-id-type="doi">10.1016/j.cca.2013.07.027</pub-id></element-citation></ref>
<ref id="b45-MCO-16-4-02519"><label>45</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>St&#x00F6;tzer</surname><given-names>OJ</given-names></name><name><surname>Lehner</surname><given-names>J</given-names></name><name><surname>Fersching-Gierlich</surname><given-names>D</given-names></name><name><surname>Nagel</surname><given-names>D</given-names></name><name><surname>Holdenrieder</surname><given-names>S</given-names></name></person-group><article-title>Diagnostic relevance of plasma DNA and DNA integrity for breast cancer</article-title><source>Tumor Biol</source><volume>35</volume><fpage>1183</fpage><lpage>1191</lpage><year>2014</year><pub-id pub-id-type="pmid">24018822</pub-id><pub-id pub-id-type="doi">10.1007/s13277-013-1158-4</pub-id></element-citation></ref>
<ref id="b46-MCO-16-4-02519"><label>46</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Cheng</surname><given-names>J</given-names></name><name><surname>Cuk</surname><given-names>K</given-names></name><name><surname>Heil</surname><given-names>J</given-names></name><name><surname>Golatta</surname><given-names>M</given-names></name><name><surname>Schott</surname><given-names>S</given-names></name><name><surname>Sohn</surname><given-names>C</given-names></name><name><surname>Schneeweiss</surname><given-names>A</given-names></name><name><surname>Burwinkel</surname><given-names>B</given-names></name><name><surname>Surowy</surname><given-names>H</given-names></name></person-group><article-title>Cell-free circulating DNA integrity is an independent predictor of impending breast cancer recurrence</article-title><source>Oncotarget</source><volume>8</volume><fpage>54537</fpage><lpage>54547</lpage><year>2017</year><pub-id pub-id-type="pmid">28903362</pub-id><pub-id pub-id-type="doi">10.18632/oncotarget.17384</pub-id></element-citation></ref>
<ref id="b47-MCO-16-4-02519"><label>47</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Hussein</surname><given-names>NA</given-names></name><name><surname>Mohamed</surname><given-names>SN</given-names></name><name><surname>Ahmed</surname><given-names>MA</given-names></name></person-group><article-title>Plasma ALU-247, ALU-115, and cfDNA integrity as diagnostic and prognostic biomarkers for breast cancer</article-title><source>Appl Biochem Biotechnol</source><volume>187</volume><fpage>1028</fpage><lpage>1045</lpage><year>2019</year><pub-id pub-id-type="pmid">30151636</pub-id><pub-id pub-id-type="doi">10.1007/s12010-018-2858-4</pub-id></element-citation></ref>
<ref id="b48-MCO-16-4-02519"><label>48</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Feng</surname><given-names>J</given-names></name><name><surname>Gang</surname><given-names>F</given-names></name><name><surname>Li</surname><given-names>X</given-names></name><name><surname>Jin</surname><given-names>T</given-names></name><name><surname>Houbao</surname><given-names>H</given-names></name><name><surname>Yu</surname><given-names>C</given-names></name><name><surname>Guorong</surname><given-names>L</given-names></name></person-group><article-title>Plasma cell-free DNA and its DNA integrity as biomarker to distinguish prostate cancer from benign prostatic hyperplasia in patients with increased serum prostate-specific antigen</article-title><source>Int Urol Nephrol</source><volume>45</volume><fpage>1023</fpage><lpage>1028</lpage><year>2013</year><pub-id pub-id-type="pmid">23779229</pub-id><pub-id pub-id-type="doi">10.1007/s11255-013-0491-2</pub-id></element-citation></ref>
<ref id="b49-MCO-16-4-02519"><label>49</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Fawzy</surname><given-names>A</given-names></name><name><surname>Sweify</surname><given-names>KM</given-names></name><name><surname>El-Fayoumy</surname><given-names>HM</given-names></name><name><surname>Nofal</surname><given-names>N</given-names></name></person-group><article-title>Quantitative analysis of plasma cell-free DNA and its DNA integrity in patients with metastatic prostate cancer using ALU sequence</article-title><source>J Egypt Natl Canc Inst</source><volume>28</volume><fpage>235</fpage><lpage>242</lpage><year>2016</year><pub-id pub-id-type="pmid">27634416</pub-id><pub-id pub-id-type="doi">10.1016/j.jnci.2016.08.003</pub-id></element-citation></ref>
<ref id="b50-MCO-16-4-02519"><label>50</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Khani</surname><given-names>M</given-names></name><name><surname>Hosseini</surname><given-names>J</given-names></name><name><surname>Mirfakhraie</surname><given-names>R</given-names></name><name><surname>Habibi</surname><given-names>M</given-names></name><name><surname>Azargashb</surname><given-names>E</given-names></name><name><surname>Pouresmaeili</surname><given-names>F</given-names></name></person-group><article-title>The value of the plasma circulating cell-free DNA concentration and integrity index as a clinical tool for prostate cancer diagnosis: A prospective case-control cohort study in an Iranian population</article-title><source>Cancer Manag Res</source><volume>11</volume><fpage>4549</fpage><lpage>4556</lpage><year>2019</year><pub-id pub-id-type="pmid">31191016</pub-id><pub-id pub-id-type="doi">10.2147/CMAR.S192646</pub-id></element-citation></ref>
<ref id="b51-MCO-16-4-02519"><label>51</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Zhang</surname><given-names>R</given-names></name><name><surname>Pu</surname><given-names>W</given-names></name><name><surname>Zhang</surname><given-names>S</given-names></name><name><surname>Chen</surname><given-names>L</given-names></name><name><surname>Zhu</surname><given-names>W</given-names></name><name><surname>Xiao</surname><given-names>L</given-names></name><name><surname>Xing</surname><given-names>C</given-names></name><name><surname>Li</surname><given-names>K</given-names></name></person-group><article-title>Clinical value of ALU concentration and integrity index for the early diagnosis of ovarian cancer: A retrospective cohort trial</article-title><source>PLoS One</source><volume>13</volume><issue>e0191756</issue><year>2018</year><pub-id pub-id-type="pmid">29401471</pub-id><pub-id pub-id-type="doi">10.1371/journal.pone.0191756</pub-id></element-citation></ref>
<ref id="b52-MCO-16-4-02519"><label>52</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Tanaka</surname><given-names>H</given-names></name><name><surname>Tsuda</surname><given-names>H</given-names></name><name><surname>Nishimura</surname><given-names>S</given-names></name><name><surname>Nomura</surname><given-names>H</given-names></name><name><surname>Kataoka</surname><given-names>F</given-names></name><name><surname>Chiyoda</surname><given-names>T</given-names></name><name><surname>Tanaka</surname><given-names>K</given-names></name><name><surname>Iguchi</surname><given-names>Y</given-names></name><name><surname>Susumu</surname><given-names>N</given-names></name><name><surname>Aoki</surname><given-names>D</given-names></name></person-group><article-title>Role of circulating free Alu DNA in endometrial cancer</article-title><source>Int J Gynecol Cancer</source><volume>22</volume><fpage>82</fpage><lpage>86</lpage><year>2012</year><pub-id pub-id-type="pmid">22146763</pub-id><pub-id pub-id-type="doi">10.1097/IGC.0b013e3182328c94</pub-id></element-citation></ref>
<ref id="b53-MCO-16-4-02519"><label>53</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Waki</surname><given-names>K</given-names></name><name><surname>Yokomizo</surname><given-names>K</given-names></name><name><surname>Kawano</surname><given-names>K</given-names></name><name><surname>Tsuda</surname><given-names>N</given-names></name><name><surname>Komatsu</surname><given-names>N</given-names></name><name><surname>Yamada</surname><given-names>A</given-names></name></person-group><article-title>Integrity of plasma cell-free DNA as a prognostic factor for vaccine therapy in patients with endometrial cancer</article-title><source>Mol Clin Oncol</source><volume>14</volume><issue>29</issue><year>2021</year><pub-id pub-id-type="pmid">33414910</pub-id><pub-id pub-id-type="doi">10.3892/mco.2020.2191</pub-id></element-citation></ref>
<ref id="b54-MCO-16-4-02519"><label>54</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Sikora</surname><given-names>K</given-names></name><name><surname>Bedin</surname><given-names>C</given-names></name><name><surname>Vicentini</surname><given-names>C</given-names></name><name><surname>Malpeli</surname><given-names>G</given-names></name><name><surname>D&#x0027;Angelo</surname><given-names>E</given-names></name><name><surname>Sperandio</surname><given-names>N</given-names></name><name><surname>Lawlor</surname><given-names>RT</given-names></name><name><surname>Bassi</surname><given-names>C</given-names></name><name><surname>Tortora</surname><given-names>G</given-names></name><name><surname>Nitti</surname><given-names>D</given-names></name><etal/></person-group><article-title>Evaluation of cell-free DNA as a biomarker for pancreatic malignancies</article-title><source>Int J Biol Markers</source><volume>30</volume><fpage>e136</fpage><lpage>e141</lpage><year>2015</year><pub-id pub-id-type="pmid">24832178</pub-id><pub-id pub-id-type="doi">10.5301/jbm.5000088</pub-id></element-citation></ref>
<ref id="b55-MCO-16-4-02519"><label>55</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Utomo</surname><given-names>WK</given-names></name><name><surname>Janmaat</surname><given-names>VT</given-names></name><name><surname>Verhaar</surname><given-names>AP</given-names></name><name><surname>Cros</surname><given-names>J</given-names></name><name><surname>L&#x00E9;vy</surname><given-names>P</given-names></name><name><surname>Ruszniewski</surname><given-names>P</given-names></name><name><surname>den Berg</surname><given-names>MS</given-names></name><name><surname>Jenster</surname><given-names>G</given-names></name><name><surname>Bruno</surname><given-names>MJ</given-names></name><name><surname>Braat</surname><given-names>H</given-names></name><etal/></person-group><article-title>DNA integrity as biomarker in pancreatic cyst fluid</article-title><source>Am J Cancer Res</source><volume>6</volume><fpage>1837</fpage><lpage>1841</lpage><year>2016</year><pub-id pub-id-type="pmid">27648370</pub-id></element-citation></ref>
<ref id="b56-MCO-16-4-02519"><label>56</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Mead</surname><given-names>R</given-names></name><name><surname>Duku</surname><given-names>M</given-names></name><name><surname>Bhandari</surname><given-names>P</given-names></name><name><surname>Cree</surname><given-names>IA</given-names></name></person-group><article-title>Circulating tumour markers can define patients with normal colons, benign polyps, and cancers</article-title><source>Br J Cancer</source><volume>105</volume><fpage>239</fpage><lpage>245</lpage><year>2011</year><pub-id pub-id-type="pmid">21712823</pub-id><pub-id pub-id-type="doi">10.1038/bjc.2011.230</pub-id></element-citation></ref>
<ref id="b57-MCO-16-4-02519"><label>57</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Leszinski</surname><given-names>G</given-names></name><name><surname>Lehner</surname><given-names>J</given-names></name><name><surname>Gezer</surname><given-names>U</given-names></name><name><surname>Holdenrieder</surname><given-names>S</given-names></name></person-group><article-title>Increased DNA integrity in colorectal cancer</article-title><source>In Vivo</source><volume>28</volume><fpage>299</fpage><lpage>303</lpage><year>2014</year><pub-id pub-id-type="pmid">24815830</pub-id></element-citation></ref>
<ref id="b58-MCO-16-4-02519"><label>58</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>El-Gayar</surname><given-names>D</given-names></name><name><surname>El-Abd</surname><given-names>N</given-names></name><name><surname>Hassan</surname><given-names>N</given-names></name><name><surname>Ali</surname><given-names>R</given-names></name></person-group><article-title>Increased free circulating DNA integrity index as a serum biomarker in patients with colorectal carcinoma</article-title><source>Asian Pacific J Cancer Prev</source><volume>17</volume><fpage>939</fpage><lpage>944</lpage><year>2016</year><pub-id pub-id-type="pmid">27039817</pub-id><pub-id pub-id-type="doi">10.7314/apjcp.2016.17.3.939</pub-id></element-citation></ref>
<ref id="b59-MCO-16-4-02519"><label>59</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Bedin</surname><given-names>C</given-names></name><name><surname>Enzo</surname><given-names>MV</given-names></name><name><surname>Del Bianco</surname><given-names>P</given-names></name><name><surname>Pucciarelli</surname><given-names>S</given-names></name><name><surname>Nitti</surname><given-names>D</given-names></name><name><surname>Agostini</surname><given-names>M</given-names></name></person-group><article-title>Diagnostic and prognostic role of cell-free DNA testing for colorectal cancer patients</article-title><source>Int J Cancer</source><volume>140</volume><fpage>1888</fpage><lpage>1898</lpage><year>2017</year><pub-id pub-id-type="pmid">27943272</pub-id><pub-id pub-id-type="doi">10.1002/ijc.30565</pub-id></element-citation></ref>
<ref id="b60-MCO-16-4-02519"><label>60</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Zhu</surname><given-names>F</given-names></name><name><surname>Ma</surname><given-names>J</given-names></name><name><surname>Ru</surname><given-names>D</given-names></name><name><surname>Wu</surname><given-names>N</given-names></name><name><surname>Zhang</surname><given-names>Y</given-names></name><name><surname>Li</surname><given-names>H</given-names></name><name><surname>Liu</surname><given-names>X</given-names></name><name><surname>Li</surname><given-names>J</given-names></name><name><surname>Zhang</surname><given-names>H</given-names></name><name><surname>Xu</surname><given-names>Y</given-names></name><etal/></person-group><article-title>Plasma DNA Integrity as a prognostic biomarker for colorectal cancer chemotherapy</article-title><source>J Oncol</source><volume>2021</volume><issue>5569783</issue><year>2021</year><pub-id pub-id-type="pmid">34135960</pub-id><pub-id pub-id-type="doi">10.1155/2021/5569783</pub-id></element-citation></ref>
<ref id="b61-MCO-16-4-02519"><label>61</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Soliman</surname><given-names>SES</given-names></name><name><surname>Alhanafy</surname><given-names>AM</given-names></name><name><surname>Habib</surname><given-names>MSE</given-names></name><name><surname>Hagag</surname><given-names>M</given-names></name><name><surname>Ibrahem</surname><given-names>RAL</given-names></name></person-group><article-title>Serum circulating cell free DNA as potential diagnostic and prognostic biomarker in non small cell lung cancer</article-title><source>Biochem Biophys Rep</source><volume>15</volume><fpage>45</fpage><lpage>51</lpage><year>2018</year><pub-id pub-id-type="pmid">29984326</pub-id><pub-id pub-id-type="doi">10.1016/j.bbrep.2018.06.002</pub-id></element-citation></ref>
<ref id="b62-MCO-16-4-02519"><label>62</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Waki</surname><given-names>K</given-names></name><name><surname>Yokomizo</surname><given-names>K</given-names></name><name><surname>Yoshiyama</surname><given-names>K</given-names></name><name><surname>Takamori</surname><given-names>S</given-names></name><name><surname>Komatsu</surname><given-names>N</given-names></name><name><surname>Yamada</surname><given-names>A</given-names></name></person-group><article-title>Integrity of circulating cell-free DNA as a prognostic biomarker for vaccine therapy in patients with nonsmall cell lung cancer</article-title><source>Immunopharmacol Immunotoxicol</source><volume>43</volume><fpage>176</fpage><lpage>182</lpage><year>2021</year><pub-id pub-id-type="pmid">33541161</pub-id><pub-id pub-id-type="doi">10.1080/08923973.2021.1872619</pub-id></element-citation></ref>
<ref id="b63-MCO-16-4-02519"><label>63</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Ren</surname><given-names>S</given-names></name><name><surname>Ren</surname><given-names>X</given-names></name><name><surname>Guo</surname><given-names>H</given-names></name><name><surname>Liang</surname><given-names>L</given-names></name><name><surname>Wei</surname><given-names>K</given-names></name><name><surname>Guo</surname><given-names>L</given-names></name><name><surname>Qu</surname><given-names>X</given-names></name><name><surname>Dai</surname><given-names>X</given-names></name><name><surname>Huang</surname><given-names>Q</given-names></name></person-group><article-title>Concentration and integrity indexes of urine cell-free DNA as promising biomarkers for early lung cancer diagnosis</article-title><source>Per Med</source><volume>18</volume><fpage>129</fpage><lpage>139</lpage><year>2021</year><pub-id pub-id-type="pmid">33565322</pub-id><pub-id pub-id-type="doi">10.2217/pme-2020-0019</pub-id></element-citation></ref>
<ref id="b64-MCO-16-4-02519"><label>64</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Jiang</surname><given-names>P</given-names></name><name><surname>Chan</surname><given-names>CW</given-names></name><name><surname>Chan</surname><given-names>KC</given-names></name><name><surname>Cheng</surname><given-names>SH</given-names></name><name><surname>Wong</surname><given-names>J</given-names></name><name><surname>Wong</surname><given-names>VW</given-names></name><name><surname>Wong</surname><given-names>GL</given-names></name><name><surname>Chan</surname><given-names>SL</given-names></name><name><surname>Mok</surname><given-names>TS</given-names></name><name><surname>Chan</surname><given-names>HL</given-names></name><etal/></person-group><article-title>Lengthening and shortening of plasma DNA in hepatocellular carcinoma patients</article-title><source>Proc Natl Acad Sci USA</source><volume>112</volume><fpage>E1317</fpage><lpage>E1325</lpage><year>2015</year><pub-id pub-id-type="pmid">25646427</pub-id><pub-id pub-id-type="doi">10.1073/pnas.1500076112</pub-id></element-citation></ref>
</ref-list>
</back>
<floats-group>
<fig id="f1-MCO-16-4-02519" position="float">
<label>Figure 1</label>
<caption><p>Flowchart of the present study showing how the 133 articles were selected.</p></caption>
<graphic xlink:href="mco-16-04-02519-g00.tif" />
</fig>
<table-wrap id="tI-MCO-16-4-02519" position="float">
<label>Table I</label>
<caption><p>List of studies evaluating ALU in cancer.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="middle">Cancer type</th>
<th align="center" valign="middle">No. of subjects</th>
<th align="center" valign="middle">Source of DNA</th>
<th align="center" valign="middle">Ratio of DNA size</th>
<th align="center" valign="middle">Conclusions</th>
<th align="center" valign="middle">(Refs.)</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="middle" rowspan="3">Breast cancer</td>
<td align="left" valign="middle">(51) Controls</td>
<td align="left" valign="middle" rowspan="3">Serum</td>
<td align="center" valign="middle" rowspan="3">ALU 247/115</td>
<td align="left" valign="middle" rowspan="3">Serum circulating cfDI is a potential molecular biomarker for detecting the progression of BC and lymph node metastases</td>
<td align="center" valign="middle" rowspan="3">(<xref rid="b27-MCO-16-4-02519" ref-type="bibr">27</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(83) Preoperative</td>
</tr>
<tr>
<td align="left" valign="middle">(Stage 0 to IV primary BC)</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="2">Breast cancer</td>
<td align="left" valign="middle">(49) Controls</td>
<td align="left" valign="middle" rowspan="2">Plasma</td>
<td align="center" valign="middle" rowspan="2">ALU 247/115</td>
<td align="left" valign="middle" rowspan="2">According to the results, necrosis could be a possible source of cfDNA ALU 247; and a tumor biology phenotypic feature</td>
<td align="center" valign="middle" rowspan="2">(<xref rid="b43-MCO-16-4-02519" ref-type="bibr">43</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(39) BC patients</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="2">Breast cancer</td>
<td align="left" valign="middle">(65) BC patients undergoing neoadjuvant chemotherapy</td>
<td align="left" valign="middle" rowspan="2">Plasma</td>
<td align="center" valign="middle" rowspan="2">ALU 247/115</td>
<td align="left" valign="middle" rowspan="2">The study indicates circulating DNA biomarkers ALU (115 and 247) as two potential future markers for the assessment of neoadjuvant chemotherapy response in BC patients</td>
<td align="center" valign="middle" rowspan="2">(<xref rid="b44-MCO-16-4-02519" ref-type="bibr">44</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">No controls reported</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="4">Breast cancer</td>
<td align="left" valign="middle">(28) Controls</td>
<td align="left" valign="middle" rowspan="4">Plasma</td>
<td align="center" valign="middle" rowspan="4">ALU 247/115</td>
<td align="left" valign="middle" rowspan="4">Plasma DNA is helpful in the diagnosis of locally BC, however, in MBC, established tumor markers are the most informative</td>
<td align="center" valign="middle" rowspan="4">(<xref rid="b45-MCO-16-4-02519" ref-type="bibr">45</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(12) Benign BC patients,</td>
</tr>
<tr>
<td align="left" valign="middle">(65) Locally confined BC patients</td>
</tr>
<tr>
<td align="left" valign="middle">(47) Metastatic breast cancer patients</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="3">Breast cancer</td>
<td align="left" valign="middle">(100) Controls</td>
<td align="left" valign="middle" rowspan="3">Plasma</td>
<td align="center" valign="middle" rowspan="3">ALU 260/111</td>
<td align="left" valign="middle" rowspan="3">Study shows that cfDI was reduced and cfDNA level increased can be used as diagnostic biomarkers for both primary and metastatic breast cancer, and cfDI as an MBC prognostic marker, as a result, they&#x0027;re good candidates for blood-based multi-marker tests</td>
<td align="center" valign="middle" rowspan="3">(<xref rid="b10-MCO-16-4-02519" ref-type="bibr">10</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(82>) Primary BC patients</td>
</tr>
<tr>
<td align="left" valign="middle">(201) MBC patients</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="4">Breast cancer</td>
<td align="left" valign="middle">(51) Controls</td>
<td align="left" valign="middle" rowspan="4">Serum</td>
<td align="center" valign="middle" rowspan="4">ALU 247/115</td>
<td align="left" valign="middle" rowspan="4">In patients with primary BC, cfDNA level and cfDI were found to represent potential prognostic markers</td>
<td align="center" valign="middle" rowspan="4">(<xref rid="b21-MCO-16-4-02519" ref-type="bibr">21</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(148) BC patients</td>
</tr>
<tr>
<td align="left" valign="middle">(148) Baseline</td>
</tr>
<tr>
<td align="left" valign="middle">(47) Postoperative</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="3">Breast cancer</td>
<td align="left" valign="middle">(175) Non-recurrent BC patients</td>
<td align="left" valign="middle" rowspan="3">Plasma</td>
<td align="center" valign="middle" rowspan="3">ALU 260/111</td>
<td align="left" valign="middle" rowspan="3">In the clinic, cfDI could be a helpful biomarker for prognosis of BC recurrence when combined with other molecular markers</td>
<td align="center" valign="middle" rowspan="3">(<xref rid="b46-MCO-16-4-02519" ref-type="bibr">46</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(7) recurrent-BC patients</td>
</tr>
<tr>
<td align="left" valign="middle">No controls reported</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="2">Breast cancer</td>
<td align="left" valign="middle">(268) MBC patients</td>
<td align="left" valign="middle" rowspan="2">Plasma</td>
<td align="center" valign="middle" rowspan="2">ALU 260/111</td>
<td align="left" valign="middle" rowspan="2">At baseline and during systematic therapy, cfDNA variables can serve as attractive prognostic markers for MBC patients, especially when combined with other markers</td>
<td align="center" valign="middle" rowspan="2">(<xref rid="b18-MCO-16-4-02519" ref-type="bibr">18</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">No controls reported</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="2">Breast cancer</td>
<td align="left" valign="middle">(10) Controls</td>
<td align="left" valign="middle" rowspan="2">Plasma</td>
<td align="center" valign="middle" rowspan="2">ALU 247/115</td>
<td align="left" valign="middle" rowspan="2">Both ALU 247 and ALU 115 appear to be prognostic markers for BC preoperative</td>
<td align="center" valign="middle" rowspan="2">(<xref rid="b47-MCO-16-4-02519" ref-type="bibr">47</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(40) BC patients (2: stage I, 31: stage II, 2: stage III, and 5: stage IV)</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="3">Breast and prostate cancers</td>
<td align="left" valign="middle">(64) Females</td>
<td align="left" valign="middle" rowspan="3">Serum</td>
<td align="center" valign="middle" rowspan="3">ALU 247/115</td>
<td align="left" valign="middle" rowspan="3">cfDI increased with disease severity and higher staging in the prostate but not in BC</td>
<td align="center" valign="middle" rowspan="3">(<xref rid="b5-MCO-16-4-02519" ref-type="bibr">5</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(Consisting of 32 controls 32 and BC patients) and (61) Males</td>
</tr>
<tr>
<td align="left" valign="middle">(Consisting of 30 controls and 31 prostate cancer patients)</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="3">Breast and lung cancers</td>
<td align="left" valign="middle">(64) Controls</td>
<td align="left" valign="middle" rowspan="3">Plasma</td>
<td align="center" valign="middle" rowspan="3">ALU 263/58</td>
<td align="left" valign="middle" rowspan="3">This study suggested ALU index could be used as a test to discriminate cancer patients from healthy individuals</td>
<td align="center" valign="middle" rowspan="3">(<xref rid="b34-MCO-16-4-02519" ref-type="bibr">34</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(64) BC patients</td>
</tr>
<tr>
<td align="left" valign="middle">(64) Lung cancer patients</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="2">Prostate cancer</td>
<td align="left" valign="middle">(96) PC patients</td>
<td align="left" valign="middle" rowspan="2">Plasma</td>
<td align="center" valign="middle" rowspan="2">ALU 247/115</td>
<td align="left" valign="middle" rowspan="2">cfDNA and cfDI could be used to differentiate PC from BPH in patients with serum PSA C 4 ng/ml</td>
<td align="center" valign="middle" rowspan="2">(<xref rid="b48-MCO-16-4-02519" ref-type="bibr">48</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(112) Benign prostate hyperplasia</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="3">Prostate cancer</td>
<td align="left" valign="middle">(30) Controls</td>
<td align="left" valign="middle" rowspan="3">Serum</td>
<td align="center" valign="middle" rowspan="3">ALU 247/115</td>
<td align="left" valign="middle" rowspan="3">ALU 115 could be a useful biomarker for identifying patients that are at high risk, pointing to early tumor cell spread as a possible seed for future metastases</td>
<td align="center" valign="middle" rowspan="3">(<xref rid="b49-MCO-16-4-02519" ref-type="bibr">49</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(50) PC patients</td>
</tr>
<tr>
<td align="left" valign="middle">(25) BPH</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="3">Prostate cancer</td>
<td align="left" valign="middle">(30) Controls</td>
<td align="left" valign="middle" rowspan="3">Plasma</td>
<td align="center" valign="middle" rowspan="3">ALU 247/115</td>
<td align="left" valign="middle" rowspan="3">A significant relationship between cfDNA concentration, its integrity, and PC suggests that the liquid biopsy can be usedas a non- invasive early diagnostic biomarker</td>
<td align="center" valign="middle" rowspan="3">(<xref rid="b50-MCO-16-4-02519" ref-type="bibr">50</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(30) PC patients</td>
</tr>
<tr>
<td align="left" valign="middle">(40) BPH</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="3">Ovarian cancer</td>
<td align="left" valign="middle">(12) Controls</td>
<td align="left" valign="middle" rowspan="3">Plasma</td>
<td align="center" valign="middle" rowspan="3">ALU 219/115</td>
<td align="left" valign="middle" rowspan="3">Monitoring ALU concentrations, alone or in combination with other tumor markers, could be used for subsidiary diagnosis and prognosis of ovarian cancer</td>
<td align="center" valign="middle" rowspan="3">(<xref rid="b51-MCO-16-4-02519" ref-type="bibr">51</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(24) Ovariancancer patients</td>
</tr>
<tr>
<td align="left" valign="middle">(12) Benign ovarian cysts patients</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="2">Ovarian cancer</td>
<td align="left" valign="middle">(28) Controls</td>
<td align="left" valign="middle" rowspan="2">Plasma</td>
<td align="center" valign="middle" rowspan="2">ALU 260/111</td>
<td align="left" valign="middle" rowspan="2">In combination with other molecular markers, cfDNA variables could be used as diagnostic biomarkers in ovarian cancer</td>
<td align="center" valign="middle" rowspan="2">(<xref rid="b29-MCO-16-4-02519" ref-type="bibr">29</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(37) Ovarian cancer patients</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="3">Endometrial cancer</td>
<td align="left" valign="middle">(15) Controls</td>
<td align="left" valign="middle" rowspan="3">Plasma</td>
<td align="center" valign="middle" rowspan="3">-</td>
<td align="left" valign="middle" rowspan="3">Although cfDNA measurement is not effective for EC screening, the change in cfDNA in a patient could be a prognostic biomarker for EC</td>
<td align="center" valign="middle" rowspan="3">(<xref rid="b52-MCO-16-4-02519" ref-type="bibr">52</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(53) EC patients</td>
</tr>
<tr>
<td align="left" valign="middle">(9) Benign gynecologic disease patients</td>
</tr>
<tr>
<td align="left" valign="middle">Endometrial cancer</td>
<td align="left" valign="middle">(60) Controls and EC patients</td>
<td align="left" valign="middle">Serum</td>
<td align="center" valign="middle">ALU 247/115</td>
<td align="left" valign="middle">The study noted the potential use of serum cfDI as a noninvasive molecular biomarker in EC. And a correlation analysis between cfDNA quantitative and qualitative content and clinicopathologic characteristics, such as body mass index, blood pressure level, and lymphovascular space invasion status</td>
<td align="center" valign="middle">(<xref rid="b32-MCO-16-4-02519" ref-type="bibr">32</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="2">Endometrial cancer</td>
<td align="left" valign="middle">(32) EC patients</td>
<td align="left" valign="middle" rowspan="2">Plasma</td>
<td align="center" valign="middle" rowspan="2">ALU 247/115</td>
<td align="left" valign="middle" rowspan="2">Decreased plasma cfDI during vaccination and the cfDI was related to prognosis. Another cancer study has confirmed some of these findings, as a result, the cfDI could be a potential biomarker for future cancer vaccination therapies</td>
<td align="center" valign="middle" rowspan="2">(<xref rid="b53-MCO-16-4-02519" ref-type="bibr">53</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">No controls reported</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="4">Pancreatic malignancies</td>
<td align="left" valign="middle">(23) Controls</td>
<td align="left" valign="middle" rowspan="4">Plasma</td>
<td align="center" valign="middle" rowspan="4">ALU 244/83</td>
<td align="left" valign="middle" rowspan="4">The lack of detectable cfDNA levels in pancreatic diseases has a significant impact on the clinical usage of such a biomarker in pancreatic ductal adenocarcinoma patients When evaluating the diagnostic value of cfDNA in pancreas pathology, different methods of analysis should be used</td>
<td align="center" valign="middle" rowspan="4">(<xref rid="b54-MCO-16-4-02519" ref-type="bibr">54</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(50) Pancreatic ductal adenocarcinoma patients</td>
</tr>
<tr>
<td align="left" valign="middle">(23) Pancreatic neuroendocrine tumor patients</td>
</tr>
<tr>
<td align="left" valign="middle">(20) Chronic pancreatitis patients</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="2">Pancreatic cancer</td>
<td align="left" valign="middle">(19) Controls</td>
<td align="left" valign="middle" rowspan="2">Serum</td>
<td align="center" valign="middle" rowspan="2">ALU 247/115</td>
<td align="left" valign="middle" rowspan="2">cfDI is not a useful biomarker to detect premalignant pancreatic tumors</td>
<td align="center" valign="middle" rowspan="2">(<xref rid="b55-MCO-16-4-02519" ref-type="bibr">55</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(19) Pancreatic cancer patients</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="2">Pancreatic cancer</td>
<td align="left" valign="middle">(32) Control adjacent pancreatic tissue specimens</td>
<td align="left" valign="middle" rowspan="2">Tissue</td>
<td align="center" valign="middle" rowspan="2">ALU 247/115</td>
<td align="left" valign="middle" rowspan="2">cfDI (ALU 247/115 ratio) was no significant difference between pancreatic cancer patients and controls</td>
<td align="center" valign="middle" rowspan="2">(<xref rid="b14-MCO-16-4-02519" ref-type="bibr">14</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(42) The tumors samples</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="3">Colorectal cancer and periampullary cancer</td>
<td align="left" valign="middle">(51) Controls</td>
<td align="left" valign="middle" rowspan="3">Serum</td>
<td align="center" valign="middle" rowspan="3">ALU 247/115</td>
<td align="left" valign="middle" rowspan="3">cfDI is a promising serum biomarker for colorectal and periampullary cancer detection and evaluation</td>
<td align="center" valign="middle" rowspan="3">(<xref rid="b38-MCO-16-4-02519" ref-type="bibr">38</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(32) CRC patients</td>
</tr>
<tr>
<td align="left" valign="middle">(19) Periampullary cancer patients</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="3">Colorectal cancer</td>
<td align="left" valign="middle">(35) Patients without endoscopic abnormality</td>
<td align="left" valign="middle" rowspan="3">Serum and plasma</td>
<td align="center" valign="middle" rowspan="3">ALU 247/115</td>
<td align="left" valign="middle" rowspan="3">In patients with positive fecal occult blood tests, the circulating marker, in combination with other markers, offers the possibility of a simple blood test as a secondary screen for CRC and polyps</td>
<td align="center" valign="middle" rowspan="3">(<xref rid="b56-MCO-16-4-02519" ref-type="bibr">56</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(26) Benign colorectal adenomas patients</td>
</tr>
<tr>
<td align="left" valign="middle">(24) CRC patients</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="3">Colorectal cancer</td>
<td align="left" valign="middle">(24) Controls</td>
<td align="left" valign="middle" rowspan="3">Serum</td>
<td align="center" valign="middle" rowspan="3">ALU 247/115</td>
<td align="left" valign="middle" rowspan="3">cfDI is significantly higher in CRC patients and could be useful in future studies</td>
<td align="center" valign="middle" rowspan="3">(<xref rid="b57-MCO-16-4-02519" ref-type="bibr">57</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(24) CRC patients</td>
</tr>
<tr>
<td align="left" valign="middle">(11) Benign gastrointestinal diseases patients</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="5">Colorectal cancer</td>
<td align="left" valign="middle">(110) Controls</td>
<td align="left" valign="middle" rowspan="5">Serum</td>
<td align="center" valign="middle" rowspan="5">ALU 247/115</td>
<td align="left" valign="middle" rowspan="5">Combined with ALU 115, the ratio of ALU 247/115 and carcinoembryonic antigen detection could enhance CRC diagnostic efficiency. Serum cfDNA and cfDI may be valuable in early diagnosis and monitoring of CRC progression and prognosis</td>
<td align="center" valign="middle" rowspan="5">(<xref rid="b30-MCO-16-4-02519" ref-type="bibr">30</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(104) Primary CRC patients</td>
</tr>
<tr>
<td align="left" valign="middle">(85) Operated colorectal cancer patients</td>
</tr>
<tr>
<td align="left" valign="middle">(16) Recurrent/metastatic CRC patients</td>
</tr>
<tr>
<td align="left" valign="middle">(63) Intestinal polyps&#x0027; patients</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="3">Colorectal cancer</td>
<td align="left" valign="middle">(20) Controls</td>
<td align="left" valign="middle" rowspan="3">Serum</td>
<td align="center" valign="middle" rowspan="3">ALU 247/115</td>
<td align="left" valign="middle" rowspan="3">As a potential serum biomarker, the cfDI outperforms the absolute DNA level for CRC diagnosis. It could also be used as a marker for monitoring the progression of CRC patients</td>
<td align="center" valign="middle" rowspan="3">(<xref rid="b58-MCO-16-4-02519" ref-type="bibr">58</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(50) CRCpatients</td>
</tr>
<tr>
<td align="left" valign="middle">(10) Benign colonic polyp&#x0027;s patients</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="3">Colorectal cancer</td>
<td align="left" valign="middle">(56) Controls</td>
<td align="left" valign="middle" rowspan="3">Serum</td>
<td align="center" valign="middle" rowspan="3">ALU 244/83</td>
<td align="left" valign="middle" rowspan="3">Serum cfDNA concentrations may be an effective source of non-invasive cancer biomarkers</td>
<td align="center" valign="middle" rowspan="3">(<xref rid="b59-MCO-16-4-02519" ref-type="bibr">59</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(114) CRC patients</td>
</tr>
<tr>
<td align="left" valign="middle">(22) Adenomatous lesion patients</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="3">Colorectal cancer</td>
<td align="left" valign="middle">(30) Controls</td>
<td align="left" valign="middle" rowspan="3">Serum</td>
<td align="center" valign="middle" rowspan="3">ALU 247/115</td>
<td align="left" valign="middle" rowspan="3">According to the study, cfDI is better to carcinoembryonic antigen as an early biomarker for detecting CRC and its potential to be employed as a biomarker for malignancy</td>
<td align="center" valign="middle" rowspan="3">(<xref rid="b35-MCO-16-4-02519" ref-type="bibr">35</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(90) CRC patients</td>
</tr>
<tr>
<td align="left" valign="middle">(30) Benigncolorectal mass patients</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="2">Colorectal cancer</td>
<td align="left" valign="middle">(76) Primary CRC patients who underwent surgery, including (60) with chemotherapy and (43) with follow-up</td>
<td align="left" valign="middle" rowspan="2">Serum</td>
<td align="center" valign="middle" rowspan="2">ALU 247/115</td>
<td align="left" valign="middle" rowspan="2">Serum cfDI may be a promising candidate biomarker for prognostic prediction in CRC patients who have had chemotherapy and are being followed-up for a short time</td>
<td align="center" valign="middle" rowspan="2">(<xref rid="b60-MCO-16-4-02519" ref-type="bibr">60</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">No controls reported</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="3">Thyroid cancer</td>
<td align="left" valign="middle">(29) Benign nodules patients</td>
<td align="left" valign="middle" rowspan="3">Plasma</td>
<td align="center" valign="middle" rowspan="3">ALU 247/115</td>
<td align="left" valign="middle" rowspan="3">Measured the integrity index in the vein draining the thyroid is similar to that measured in the antecubital vein, using a peripheral liquid biopsy to validate cfDI measurements. In opposition to its diagnostic efficacy in aggressive cancers, cfDI has limited utility as a biomarker of malignancy in cytologically indeterminate thyroid nodules</td>
<td align="center" valign="middle" rowspan="3">(<xref rid="b33-MCO-16-4-02519" ref-type="bibr">33</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(38) Malignant lesions patients</td>
</tr>
<tr>
<td align="left" valign="middle">No controls reported</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="3">Non-small cell lung cancer</td>
<td align="left" valign="middle">(40) Controls</td>
<td align="left" valign="middle" rowspan="3">Serum</td>
<td align="center" valign="middle" rowspan="3">ALU 247/115</td>
<td align="left" valign="middle" rowspan="3">Serum cfDNA level, its integrity may be an effective tool of NSCLC early diagnosis and prognosis of the disease</td>
<td align="center" valign="middle" rowspan="3">(<xref rid="b61-MCO-16-4-02519" ref-type="bibr">61</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(60) Non-small cell lung cancer patients</td>
</tr>
<tr>
<td align="left" valign="middle">(40) Chronic obstructive pulmonary disease patients</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="3">Non-small cell lung cancer</td>
<td align="left" valign="middle">(107) Controls</td>
<td align="left" valign="middle" rowspan="3">Plasma</td>
<td align="center" valign="middle" rowspan="3">ALU 247/115</td>
<td align="left" valign="middle" rowspan="3">NSCLC may be identified from tuberculosis with cfDNA and cfDI as indicators. Furthermore, the integrity index had a significant effect on traditional tumor markers in distinguishing NSCLC from tuberculosis</td>
<td align="center" valign="middle" rowspan="3">(<xref rid="b31-MCO-16-4-02519" ref-type="bibr">31</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(106) NSCLCpatients</td>
</tr>
<tr>
<td align="left" valign="middle">(105) Tuberculosis patients</td>
</tr>
<tr>
<td align="left" valign="middle">Non-small cell lung cancer</td>
<td align="left" valign="middle">(130) NSCLC patients</td>
<td align="left" valign="middle">Plasma</td>
<td align="center" valign="middle">ALU 247/115</td>
<td align="left" valign="middle">The findings show that cfDI could be used as a prognostic biomarker in patients who received a personalized peptidevaccine</td>
<td align="center" valign="middle">(<xref rid="b62-MCO-16-4-02519" ref-type="bibr">62</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="2">Lung cancer</td>
<td align="left" valign="middle">(19) Controls</td>
<td align="left" valign="middle" rowspan="2">Plasma</td>
<td align="center" valign="middle" rowspan="2">ALU 247/115</td>
<td align="left" valign="middle" rowspan="2">The study suggests that ALU repeat ratios could be used for prognostic purposes in the advanced setting for patients of lung cancer patients</td>
<td align="center" valign="middle" rowspan="2">(<xref rid="b15-MCO-16-4-02519" ref-type="bibr">15</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(29) Lung cancer patients</td>
</tr>
<tr>
<td align="left" valign="middle" rowspan="2">Lung cancer</td>
<td align="left" valign="middle">(35) Controls</td>
<td align="left" valign="middle" rowspan="2">Urine</td>
<td align="center" valign="middle" rowspan="2">ALU-60, 115 and 247</td>
<td align="left" valign="middle" rowspan="2">cfDNA concentration index could serve as promising diagnostic biomarkers for lung cancer</td>
<td align="center" valign="middle" rowspan="2">(<xref rid="b63-MCO-16-4-02519" ref-type="bibr">63</xref>)</td>
</tr>
<tr>
<td align="left" valign="middle">(55) Lung cancer patients</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn><p>ALU, <italic>Arthrobacter luteus</italic>; BC, breast cancer; MBC, metastatic breast cancer; PC, prostate cancer; BPH, benign prostate hyperplasia; EC, endometrial cancer; CRC, colorectal cancer; NSCLC, non-small cell lung cancer; cfDNA, cell-free DNA; cfDI, circulating-free DNA integrity.</p></fn>
</table-wrap-foot>
</table-wrap>
</floats-group>
</article>
