<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "journalpublishing3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="en" article-type="review-article">
<?release-delay 0|0?>
<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">OR</journal-id>
<journal-title-group>
<journal-title>Oncology Reports</journal-title>
</journal-title-group>
<issn pub-type="ppub">1021-335X</issn>
<issn pub-type="epub">1791-2431</issn>
<publisher>
<publisher-name>D.A. Spandidos</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3892/or.2026.9112</article-id>
<article-id pub-id-type="publisher-id">OR-55-6-09112</article-id>
<article-categories>
<subj-group>
<subject>Review</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>Role of CHD4 in tumor progression, DNA damage response and treatment resistance (Review)</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author"><name><surname>Li</surname><given-names>Shuo</given-names></name>
<xref rid="af1-or-55-6-09112" ref-type="aff">1</xref></contrib>
<contrib contrib-type="author"><name><surname>Ma</surname><given-names>Quan</given-names></name>
<xref rid="af2-or-55-6-09112" ref-type="aff">2</xref></contrib>
<contrib contrib-type="author"><name><surname>Lian</surname><given-names>Keying</given-names></name>
<xref rid="af1-or-55-6-09112" ref-type="aff">1</xref></contrib>
<contrib contrib-type="author"><name><surname>Jiang</surname><given-names>Zhisheng</given-names></name>
<xref rid="af3-or-55-6-09112" ref-type="aff">3</xref></contrib>
<contrib contrib-type="author"><name><surname>Ma</surname><given-names>Yun</given-names></name>
<xref rid="af1-or-55-6-09112" ref-type="aff">1</xref>
<xref rid="af3-or-55-6-09112" ref-type="aff">3</xref>
<xref rid="c1-or-55-6-09112" ref-type="corresp"/></contrib>
</contrib-group>
<aff id="af1-or-55-6-09112"><label>1</label>Institute of Biochemistry and Molecular Biology, Hengyang Medical College, University of South China, Hengyang, Hunan 421001, P.R. China</aff>
<aff id="af2-or-55-6-09112"><label>2</label>Nuclear Power Institute of China, Chengdu, Sichuan 610213, P.R. China</aff>
<aff id="af3-or-55-6-09112"><label>3</label>Department of Biochemistry and Molecular Biology, Laboratory of Nuclear Radiation DNA Damage and Repair, School of Basic Medicine, Hengyang Medical School, University of South China, Hengyang, Hunan 421001, P.R. China</aff>
<author-notes>
<corresp id="c1-or-55-6-09112"><italic>Correspondence to:</italic> Dr Yun Ma, Institute of Biochemistry and Molecular Biology, Hengyang Medical College, University of South China, 28 Changsheng West Road, Hengyang, Hunan 421001, P.R. China, E-mail: <email>fxsnhdx@126.com</email></corresp>
</author-notes>
<pub-date pub-type="collection"><month>06</month><year>2026</year></pub-date>
<pub-date pub-type="epub"><day>02</day><month>04</month><year>2026</year></pub-date>
<volume>55</volume>
<issue>6</issue>
<elocation-id>107</elocation-id>
<history>
<date date-type="received"><day>19</day><month>12</month><year>2025</year></date>
<date date-type="accepted"><day>19</day><month>03</month><year>2026</year></date>
</history>
<permissions>
<copyright-statement>Copyright: &#x00A9; Li et al.</copyright-statement>
<copyright-year>2026</copyright-year>
<license license-type="open-access">
<license-p>This is an open access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by-nc-nd/4.0/">Creative Commons Attribution-NonCommercial-NoDerivs License</ext-link>, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.</license-p></license>
</permissions>
<abstract>
<p>Chromodomain helicase DNA-binding protein 4 (CHD4) is a core adenosine triphosphate (ATP)-dependent chromatin-remodeling factor of the nucleosome-remodeling and deacetylase (NuRD) complex. It plays a crucial role in chromatin structure regulation, gene expression regulation, and DNA damage response. It has been demonstrated that CHD4 has context-dependent functions in tumor development and progression. It can influence tumor progression via such mechanisms as regulating tumor-related signaling pathways, maintaining the silencing of tumor suppressor genes, and promoting metabolic adaptation; it can also exert tumor-suppressive effects in specific transcriptional regulatory environments. Additionally, during DNA damage response, CHD4 participates in chromatin remodeling at damage sites, in cell cycle recovery, and in repair pathway selection. It is also involved in the development of tumor treatment resistance through mechanisms that include regulation of DNA repair, cell cycle progression, drug efflux, the tumor immune microenvironment, and replication fork stability. It has also been shown that various non-coding RNAs participate in the functional regulation of CHD4 by modulating its expression, localization, and protein stability. In summary, as a key node connecting chromatin regulation, genome stability, and tumor treatment response, CHD4 holds significant importance in tumor progression and treatment.</p>
</abstract>
<kwd-group>
<kwd>chromodomain helicase DNA-binding protein 4</kwd>
<kwd>nucleosome remodeling and deacetylase complex</kwd>
<kwd>chromatin remodeling</kwd>
<kwd>DNA damage response</kwd>
<kwd>tumor progression</kwd>
<kwd>treatment resistance</kwd>
<kwd>non-coding RNA</kwd>
</kwd-group>
<funding-group>
<award-group>
<funding-source>National Natural Science Foundation of China</funding-source>
<award-id>81971087</award-id>
</award-group>
<funding-statement>The present study was supported by the National Natural Science Foundation of China (grant no. 81971087).</funding-statement>
</funding-group>
</article-meta>
</front>
<body>
<sec sec-type="intro">
<label>1.</label>
<title>Introduction</title>
<p>The occurrence and development of tumors are complex processes driven by multiple factors, including accumulation of gene mutations (<xref rid="b1-or-55-6-09112" ref-type="bibr">1</xref>), imbalance in epigenetic regulation (<xref rid="b2-or-55-6-09112" ref-type="bibr">2</xref>), and abnormalities in key signaling pathways (<xref rid="b3-or-55-6-09112" ref-type="bibr">3</xref>). Although high-throughput sequencing technology has systematically depicted the mutation landscapes of different tumor types (<xref rid="b4-or-55-6-09112" ref-type="bibr">4</xref>), gene mutations alone are insufficient to fully explain the high degree of plasticity and adaptability exhibited by tumor cells under different microenvironments and treatment pressures. By contrast, epigenetic regulation is dynamic and reversible, enabling tumor cells to rapidly reshape their transcriptional processes without altering the DNA sequence, which allows them to adapt to environmental changes and gain survival advantages (<xref rid="b5-or-55-6-09112" ref-type="bibr">5</xref>). Therefore, chromatin-level regulation is an important mechanistic basis for understanding tumor progression and differences in treatment responses.</p>
<p>Of numerous chromatin-remodeling complexes, the nucleosome-remodeling and deacetylase (NuRD) complex holds a unique position due to its simultaneous adenosine triphosphate (ATP)-dependent chromatin-remodeling activity and histone deacetylase (HDAC) activity (<xref rid="b6-or-55-6-09112" ref-type="bibr">6</xref>). Structural studies have revealed that the NuRD complex has a highly modular organizational form. The HDAC-metastasis-associated protein (MTA)-retinoblastoma-binding protein subunits form a relatively stable deacetylase core, while chromodomain helicase DNA-binding protein 3 or 4 (CHD3, CHD4) constitutes the ATP-dependent chromatin-remodeling module. The selective assembly of different subunits determines the functional characteristics of different NuRD subtypes (<xref rid="b7-or-55-6-09112" ref-type="bibr">7</xref>) (<xref rid="f1-or-55-6-09112" ref-type="fig">Fig. 1</xref>).</p>
<p>CHD4 belongs to the CHD family of chromatin-remodeling proteins and contains multiple conserved functional domains. Its N-terminus has two tandem plant homeodomain (PHD) finger domains that can recognize histone H3 tail modifications, thereby promoting localization of the NuRD complex to chromatin regions associated with gene silencing (<xref rid="b8-or-55-6-09112" ref-type="bibr">8</xref>). Following the PHD finger domains, CHD4 has two tandem chromodomains that can interact with nucleosomal DNA and participate in regulation of ATPase activity. Its central region encompasses a highly conserved sucrose non-fermentable 2 (SNF2) family ATPase/helicase domain, which provides energy via ATP hydrolysis to drive nucleosome sliding (<xref rid="b9-or-55-6-09112" ref-type="bibr">9</xref>). In addition to the ATPase core domain, multiple auxiliary regions of CHD4 are also involved in its functional regulation. For example, the N-terminal disordered region can enhance chromatin-remodeling activity, while the C-terminal region has a certain self-inhibitory effect, thereby limiting the catalytic ability of the ATPase. When the SWItch 3-adenosine deaminase 2-nuclear receptor corepressor 1-transcription factor IIIB/SANT-like Imitation SWItch domain (SANT/SLIDE) DNA-binding domain binds to DNA, this self-inhibitory state can be relieved, thereby activating the nucleosome-remodeling function of CHD4 (<xref rid="b10-or-55-6-09112" ref-type="bibr">10</xref>). Through the synergistic action of these domains, CHD4 plays important roles in gene expression regulation (<xref rid="b11-or-55-6-09112" ref-type="bibr">11</xref>), DNA damage response (DDR) (<xref rid="b12-or-55-6-09112" ref-type="bibr">12</xref>), and chromatin structure regulation (<xref rid="b13-or-55-6-09112" ref-type="bibr">13</xref>,<xref rid="b14-or-55-6-09112" ref-type="bibr">14</xref>). Therefore, abnormal expression or gene mutations of <italic>Chd4</italic> are closely associated with various human diseases, including congenital developmental defects and neurological disorders (<xref rid="b6-or-55-6-09112" ref-type="bibr">6</xref>). Meanwhile, an increasing number of studies have shown that CHD4 also plays a key role in tumor initiation, tumor evolution, and the development of treatment resistance (<xref rid="b15-or-55-6-09112" ref-type="bibr">15</xref>).</p>
</sec>
<sec>
<label>2.</label>
<title>Context-dependent roles of CHD4 in tumor progression</title>
<p>CHD4 is a typical context-dependent epigenetic regulator. In different cell types, chromatin environments, and signaling pathways, CHD4 can either promote tumorigenesis or exhibit tumor-suppressive functions (<xref rid="b16-or-55-6-09112" ref-type="bibr">16</xref>).</p>
<sec>
<title/>
<sec>
<title>Molecular mechanisms by which CHD4 promotes tumor progression</title>
<p>In various solid tumors, high expression of CHD4 is often associated with increased tumor aggressiveness, enhanced metastatic potential, and poor prognosis, suggesting that its role in tumor progression is crucial (<xref rid="b17-or-55-6-09112" ref-type="bibr">17</xref>). Recent studies have shown that CHD4 does not function through a single molecular pathway but is more likely to influence tumor cell behavior by regulating multiple interconnected transcriptional processes (<xref rid="b18-or-55-6-09112" ref-type="bibr">18</xref>&#x2013;<xref rid="b20-or-55-6-09112" ref-type="bibr">20</xref>).</p>
<p>Of these transcriptional regulatory networks (TRNs), oncogenic signaling pathways form an important basis for CHD4&#x2032;s involvement in tumor migration and invasion. Wingless/Integrated (Wnt)/&#x03B2;-catenin is a typical signaling pathway through which CHD4 regulates tumor metastasis. In gastric cancer (GC), CHD4 interacts with myosin heavy chain 9, thereby inhibiting the activity of glycogen synthase kinase-3&#x03B2; and stabilizing &#x03B2;-catenin, which activates the Wnt/epithelial-mesenchymal transition (EMT) signaling pathway, thereby promoting tumor invasion and metastasis (<xref rid="b18-or-55-6-09112" ref-type="bibr">18</xref>). Similar regulatory patterns can also be observed in ovarian cancer, where CHD4 enhances nuclear accumulation and transcriptional activity of &#x03B2;-catenin through the enhancer of zeste homolog 2 (EZH2)/&#x03B2;-catenin signaling axis (<xref rid="b19-or-55-6-09112" ref-type="bibr">19</xref>). These studies suggest that CHD4 may repeatedly participate in the regulation of &#x03B2;-catenin-related transcriptional processes in different tumor types, thereby promoting EMT and tumor metastasis. In addition to the Wnt/&#x03B2;-catenin pathway, CHD4&#x2032;s influence on tumor cell migration is also closely related to cytoskeleton-related signaling pathways. In non-small cell lung cancer, CHD4 activates the <italic>Ras</italic> homolog gene family, member A (RhoA)/&#x03C1;-associated protein kinase signaling pathway by regulating PHD finger protein 5A, thereby enhancing the proliferation and migratory ability of tumor cells (<xref rid="b20-or-55-6-09112" ref-type="bibr">20</xref>). This mechanism suggests that CHD4 might help regulate tumor cell movement by affecting cytoskeletal dynamics and act as a bridge between different signaling networks.</p>
<p>The regulatory role of CHD4 is not limited to cell migration but also extends to regulation of tumor cell proliferation. For example, in breast cancer (BC), CHD4 upregulates the transcriptional levels of estrogen receptor-&#x03B1; (ER&#x03B1;) and inhibits its ubiquitination degradation, thereby continuously enhancing the transcriptional activity of the ER&#x03B1; signaling pathway (<xref rid="b21-or-55-6-09112" ref-type="bibr">21</xref>). This phenomenon indicates that CHD4 can not only regulate classical signaling pathways but might also further amplify oncogenic signals by stabilizing key transcription factors (TFs).</p>
<p>A hypoxic state in the tumor microenvironment (TME) further expands the functions of CHD4, which can co-activate hypoxia-inducible factors 1&#x03B1; and 2&#x03B1; (HIF-1&#x03B1;, HIF-2&#x03B1;), synergistically promoting the transcription of hypoxia-responsive genes with the HIF complex. Under normoxic conditions, CHD4 is already enriched in the promoter regions of HIF target genes and promotes the loading of RNA polymerase II via p300, while HIF activation under hypoxic conditions further enhances the recruitment of CHD4 to chromatin, forming a positive-feedback regulatory loop and amplifying the hypoxia response signal (<xref rid="b22-or-55-6-09112" ref-type="bibr">22</xref>). This process suggests that the chromatin-binding and transcriptional regulatory activity of CHD4 may be further enhanced under hypoxic conditions. Such changes may further affect the downstream TRN of CHD4. For example, CHD4 can promote citrullination of the key glycolytic enzyme pyruvate kinase muscle isozyme 2 (PKM2) by regulating the expression of peptidyl arginine deiminases 1 and 3 (PADI1, PADI3), thereby altering PKM2&#x2032;s metabolic regulatory mode and enhancing glycolytic activity (<xref rid="b23-or-55-6-09112" ref-type="bibr">23</xref>). Given that enhanced glycolysis is an important means by which tumor cells adapt to hypoxic environments, this CHD4-PADI1/3-PKM2 regulatory axis may be a mechanism by which CHD4 participates in tumor metabolic adaptation under hypoxic conditions.</p>
<p>In addition to signaling and metabolic regulation, CHD4 also participates in tumorigenesis by maintaining the silencing of tumor suppressor genes. In colorectal cancer (CRC), CHD4 is recruited to DNA damage sites and further recruits DNA methyltransferases (DNMTs) to establish abnormal DNA methylation and maintain suppressive chromatin structures at the promoter regions of multiple tumor suppressor genes (<xref rid="b24-or-55-6-09112" ref-type="bibr">24</xref>). Moreover, CHD4 can synergize with DNMT1 and DNMT3B to jointly maintain the stable silencing of tumor suppressor genes through multiple epigenetic mechanisms, including DNA methylation, histone deacetylation, and nucleosome remodeling (<xref rid="b25-or-55-6-09112" ref-type="bibr">25</xref>).</p>
<p>It is worth noting that in certain tumor types, CHD4 also helps maintain chromatin structural homeostasis. For example, in Ewing sarcoma, CHD4 deletion leads to chromatin structural disorders and induces spontaneous DNA damage accumulation, thereby significantly inhibiting tumor cell proliferation (<xref rid="b13-or-55-6-09112" ref-type="bibr">13</xref>). This phenomenon suggests that the role of CHD4 may be highly dependent on the context of the specific tumor environment.</p>
<p>Taken together, these studies paint an increasingly clearer picture: CHD4 reshapes tumor cell behavior through multiple mechanisms, including regulation of signaling pathways, microenvironment adaptation, metabolic reprogramming, and epigenetic regulation, thereby promoting tumor progression.</p>
</sec>
<sec>
<title>Tumor-suppressive role of CHD4 in specific transcriptional environments</title>
<p>Although numerous studies have shown that CHD4 has oncogenic effects in various tumors, under specific transcriptional regulatory conditions, it may also exhibit tumor-suppressive functions. For example, in luminal-type BC, the TF transcriptional repressor GATA binding 1 (TRPS1) can recruit the CHD4/NuRD (MTA2) complex to the promoter region of tp63, inhibiting tp63 expression via chromatin remodeling and thereby limiting tumor cell migration and invasion (<xref rid="b26-or-55-6-09112" ref-type="bibr">26</xref>). Further research has found that TRPS1 can also recruit CHD4 to the regulatory region of sex-determining region Y (SRY)-related high-mobility group (HMG) box 2 (SOX2), inhibiting SOX2 transcription by altering local chromatin structure (<xref rid="b27-or-55-6-09112" ref-type="bibr">27</xref>). Since SOX2 is an important factor for maintaining cancer stem cell characteristics, the TRPS1-CHD4-SOX2 regulatory axis can exert tumor-suppressive effects by limiting tumor stemness. In addition, CHD4 can help inhibit tumor progression by regulating enhancer activity. Studies have shown that AT-rich interactive domain-containing protein 1A (ARID1A) promotes the binding of the CHD4-zinc finger myeloid, Nervy, and deformed epidermal autoregulatory factor 1 homolog, or MYND, type containing 8 (ZMYND8) complex to super-enhancers by maintaining the distribution of the histone variant H3.3 on chromatin, thereby exerting transcriptional inhibitory effects on genes related to EMT and cell migration. When ARID1A function is lost, the transcriptional inhibition mediated by CHD4-ZMYND8 is disrupted, leading to excessive activation of super-enhancers and promoting tumor cell migration and invasion (<xref rid="b16-or-55-6-09112" ref-type="bibr">16</xref>).</p>
<p>The results of the aforementioned studies indicate that when CHD4 synergizes with specific TFs or chromatin regulators, it can limit the activation of abnormal transcriptional processes by maintaining suppressive chromatin structures, thereby exerting tumor-suppressive effects under specific contexts.</p>
</sec>
<sec>
<title>Effect of Chd4 mutations on tumor progression</title>
<p>In addition to changes in expression levels, mutations to the <italic>Chd4</italic> gene can also reshape the TRN related to tumor progression. It has been shown that <italic>Chd4</italic> mutations do not necessarily lead to complete loss of its function but may reshape the cell&#x0027;s transcriptional process by altering its chromatin-remodeling activity or target gene selectivity. This view was first supported by functional studies. Researchers used the <italic>Drosophila</italic> homolog dMi-2 as a model to systematically analyze various missense mutations of <italic>Chd4</italic> obtained from patients with tumors. The results revealed that these mutations could alter the ATPase activity, nucleosome-binding ability, and nucleosome-sliding efficiency of <italic>Chd4</italic> in a mutation-specific manner. Some mutations reduce ATP hydrolysis ability or weaken chromatin-remodeling efficiency, while others may enhance related activities (<xref rid="b28-or-55-6-09112" ref-type="bibr">28</xref>). Similar mutation effects have also been observed in human tumors. For example, in endometrial cancer, the common mutations R975H and R1162W can reduce CHD4 protein stability and weaken its function, thereby activating the transforming growth factor-&#x03B2; signaling pathway and enhancing cancer cell stemness characteristics (<xref rid="b29-or-55-6-09112" ref-type="bibr">29</xref>). Another study also found that the R975H mutation could activate multiple oncogenic signaling pathways, such as tumor necrosis factor-&#x03B1;/nuclear factor &#x03BA;-light-chain-enhancer of activated B cells, Kirsten <italic>Ras</italic> oncogene homolog, mammalian target of rapamycin, and myelocytomatosis oncogene; and promote polarization of tumor-associated macrophages toward an immunosuppressive M2 phenotype, thereby enhancing tumor immune escape ability (<xref rid="b15-or-55-6-09112" ref-type="bibr">15</xref>). In addition to missense mutations, some truncating mutations located in the SNF2 domain (such as p.Trp736Ter) may also disrupt the integrity of the NuRD complex and lead to abnormal chromatin remodeling, thereby promoting tumorigenesis and metastasis (<xref rid="b30-or-55-6-09112" ref-type="bibr">30</xref>). In conclusion, the effects of <italic>Chd4</italic> mutations on tumor progression show significant heterogeneity.</p>
</sec>
</sec>
</sec>
<sec>
<label>3.</label>
<title>CHD4 in DDR and tumor treatment resistance</title>
<sec>
<title/>
<sec>
<title>Regulatory role of CHD4 in DDR</title>
<p>DDR, the core defense system allowing cells to maintain genomic integrity, encompasses multiple stages such as damage recognition, signal transduction, chromatin remodeling and DNA repair (<xref rid="b31-or-55-6-09112" ref-type="bibr">31</xref>). It has been shown that dynamic changes in chromatin structure are an indispensable regulatory link in the DDR chain. As an important chromatin-remodeling factor, CHD4 plays a crucial role in this process (<xref rid="b32-or-55-6-09112" ref-type="bibr">32</xref>).</p>
<p>After the occurrence of DNA double-strand breaks (DSBs), cells first rapidly recognize the damaged sites through poly [adenosine diphosphate (ADP)-ribose] polymerase 1/2 (PARP1/2)-mediated poly-ADP-ribosylation reactions. Poly [adenosine diphosphate (ADP)-ribose] (PAR) chains not only serve as a scaffold for recruiting DNA repair factors but they can also induce local chromatin relaxation, thereby promoting recruitment of repair factors (<xref rid="b33-or-55-6-09112" ref-type="bibr">33</xref>). Studies have demonstrated that at this stage, CHD4 can be rapidly recruited to DNA damage sites in a PAR-dependent manner and participate in early chromatin remodeling (<xref rid="b32-or-55-6-09112" ref-type="bibr">32</xref>). In the early stages of DDR, CHD4 usually works in concert with the acetyltransferase p300. P300 reduces chromatin compaction through histone acetylation, while CHD4 relies on its ATPase activity to regulate nucleosome positions. This maintains a relatively open and dynamic chromatin state in the damaged region, thereby providing optimal conditions for the entry of DNA repair factors (<xref rid="b34-or-55-6-09112" ref-type="bibr">34</xref>).</p>
<p>As DDR signals are further amplified, ataxia telangiectasia mutated protein (ATM) kinase is activated and initiates a series of signal cascades. Really Interesting New Gene finger protein 8 (RNF8)-mediated histone ubiquitination is considered an important step in signal amplification. RNF8 can catalyze the ubiquitination modification of H2A and H2A histone family member X, providing a molecular platform for the stable binding of DNA repair complexes such as breast cancer type 1 (BRCA1) (<xref rid="b35-or-55-6-09112" ref-type="bibr">35</xref>). During this catalytic process, CHD4 enhances the spatial accessibility between RNF8 and its substrates by regulating the chromatin structure around the damaged sites, thereby promoting formation of ubiquitin chains. Meanwhile, RNF8 can also promote recruitment of additional CHD4 to the damaged region via a non-catalytic mechanism, forming a positive-feedback regulatory loop at damaged sites and further stabilizing the assembly of DNA repair complexes (<xref rid="b36-or-55-6-09112" ref-type="bibr">36</xref>).</p>
<p>Regulation of DDR also relies on the synergistic action of multiple chromatin regulatory factors. For example, the silent mating type information regulation 2 homolog 6 (SIRT6)/CHD4 pathway is considered an important regulatory branch for DSB repair. SIRT6 can act as a damage sensor and promote early signal amplification by activating PARP1 (<xref rid="b37-or-55-6-09112" ref-type="bibr">37</xref>); under ATM-dependent conditions, interaction between SIRT6 and CHD4 is significantly enhanced, and they jointly promote chromatin remodeling at the damaged sites and homologous recombination repair (HRR). When ATM activity is inhibited or absent, this synergistic effect is significantly weakened, leading to a decrease in HRR efficiency (<xref rid="b38-or-55-6-09112" ref-type="bibr">38</xref>). In addition, it has been demonstrated that CHD4-mediated chromatin remodeling may also affect the choice of DNA repair pathways via regulation of R-loop-related mechanisms. When DSBs occur in transcriptionally active chromatin regions, the bromodomain and extra-terminal domain family protein bromodomain-containing protein 3 can recruit CHD4 and work in concert with the Tat interacting protein, 60 kDa complex to initiate chromatin remodeling, promoting histone H4-lysine 16 acetylation and expelling heterochromatin protein 1. This inhibits the binding of p53 binding protein 1 at damaged sites and promotes the recruitment of BRCA1 and R-loop-related repair factors (<xref rid="b39-or-55-6-09112" ref-type="bibr">39</xref>), a process that ultimately promotes R-loop-mediated HRR. Taken together, these findings suggest that CHD4 can affect DNA repair pathway selection by regulating R-loop-related chromatin remodeling, thereby maintaining genomic stability.</p>
<p>As DNA damage is gradually repaired, cells must terminate DDR signals in a timely manner and restore normal cell cycle progression. The ATM-checkpoint kinase 2-p53 signaling axis plays a central role in this process: p53 can induce p21 expression to mediate G1/S checkpoint arrest, thereby providing a window of time for DNA repair (<xref rid="b40-or-55-6-09112" ref-type="bibr">40</xref>). It has been revealed that as a core subunit of the NuRD complex, CHD4 can mediate p53 deacetylation and inhibit its transcriptional activity (<xref rid="b41-or-55-6-09112" ref-type="bibr">41</xref>). This suggests that CHD4 may be involved in terminating DDR signals and restoring cell cycle after DNA repair is completed.</p>
<p>In the more complex chromatin regulatory network (CRN), the overall synergistic action of the NuRD complex is also crucial for DDR. For example, the R-loop structure formed on DNA damage can promote the establishment of chromatin boundaries via the GATA zinc finger domain containing 2B/NuRD complex in the damaged region, thereby limiting excessive DNA end resection and maintaining the stability of the repair process (<xref rid="b42-or-55-6-09112" ref-type="bibr">42</xref>). In addition, in the PARP-dependent repair pathway, chromatin regulatory factors such as lysine (K)-specific demethylase 5A and ZMYND8 can further stabilize the enrichment of CHD4 at damaged sites by interacting with NuRD complex subunits (<xref rid="b43-or-55-6-09112" ref-type="bibr">43</xref>). The aforementioned CRNs jointly participate in the dynamic remodeling of chromatin structure in the damaged region, thereby affecting the localization of DNA repair factors and choice of repair pathways (<xref rid="f2-or-55-6-09112" ref-type="fig">Fig. 2</xref>).</p>
</sec>
<sec>
<title>CHD4 and tumor treatment resistance</title>
<p>Abnormal CHD4 expression is closely related to insensitivity of tumors to radiotherapy (<xref rid="b44-or-55-6-09112" ref-type="bibr">44</xref>) and chemotherapy (CT) (<xref rid="b45-or-55-6-09112" ref-type="bibr">45</xref>), suggesting that it plays an important role in the development of tumor treatment resistance. In the context of DNA-damaging treatment, CHD4 can regulate chromatin structure to keep DDR-related genes ready to be rapidly activated, thereby enhancing tumor cells&#x0027; ability to repair treatment-induced DNA damage. This effect is relatively typical in glioblastoma, where CHD4 maintains the expression of key HRR factors such as RAD51, thereby increasing tumor cell resistance to radiotherapy and DNA-damaging CT drugs (<xref rid="b46-or-55-6-09112" ref-type="bibr">46</xref>). This phenomenon suggests that the treatment resistance mediated by CHD4 is not merely due to changes in a single repair factor but rather reflects CHD4&#x2032;s regulation of the DNA repair transcriptional process&#x0027;s overall accessibility.</p>
<p>In addition to enhanced DNA repair ability, CHD4 can also participate in CT resistance by regulating pro-survival signaling pathways and drug efflux mechanisms. In GC, high CHD4 expression is closely related to tumor progression and CT resistance. CHD4 promotes the interaction between mitogen-activated protein kinase (MEK1/2) and extracellular signal-regulated kinase 1/2 (ERK1/2) and activates the MEK/ERK signaling pathway, thereby maintaining continuous phosphorylation of ERK and enhancing the proliferation and survival ability of tumor cells. Meanwhile, this pathway can also upregulate major vault protein expression, promote drug efflux, and reduce the intracellular concentration of CT drugs (for example, cisplatin), ultimately leading to CT resistance in GC cells (<xref rid="b47-or-55-6-09112" ref-type="bibr">47</xref>). Similar drug efflux mechanisms can also be observed in ovarian cancer, where high CHD4 expression can upregulate that of multidrug resistance mutation 1 and enhance drug efflux ability, thereby reducing the accumulation of cisplatin in cells and leading to platinum-based CT resistance (<xref rid="b48-or-55-6-09112" ref-type="bibr">48</xref>). These findings collectively indicate that CHD4 not only affects the DNA repair ability of tumor cells but may also expand drug resistance by remodeling the intracellular-drug disposition and survival signaling networks.</p>
<p>The effect of CHD4 on treatment response also extends to the level of cell cycle regulation. In BC, CHD4 forms the NuRD complex with HDAC1 and acts on the p21 promoter region, inhibiting the transcription and expression of p21 via chromatin remodeling and histone deacetylation (<xref rid="b49-or-55-6-09112" ref-type="bibr">49</xref>). Since p21 is an important cell cycle inhibitor, such a decrease in its expression can promote cell cycle progression, making tumor cells more likely to bypass cell cycle checkpoints after DNA damage and thereby enhancing their resistance to CT drugs. This shows that CHD4-mediated treatment resistance not only depends on &#x2018;repairing more damage&#x2019; but also involves the reshaping of cell cycle timing, enabling tumor cells to maintain a proliferative advantage under treatment pressure.</p>
<p>In addition to the intrinsic mechanisms of tumor cells, CHD4 can also affect the response to immunotherapy by regulating the tumor immune microenvironment. In microsatellite-stable CRC, CHD4 can recruit the histone methyltransferase euchromatic histone lysine methyltransferase 2 (EHMT2) to form a co-transcriptional inhibitory complex, thereby inhibiting the expression of galectin-7 (GAL7) and maintaining an immunosuppressive &#x2018;cold-tumor&#x2019; microenvironment. Inhibition of EHMT2 can restore GAL7 expression and enhance Cluster of Differentiation 8<sup>&#x002B;</sup> (CD8<sup>&#x002B;</sup>) T-cell-mediated antitumor immune responses, thereby increasing sensitivity to programmed cell death protein 1 inhibitor therapy (<xref rid="b50-or-55-6-09112" ref-type="bibr">50</xref>). Pan-cancer data analysis further supports the important role of CHD4 in tumor treatment resistance. CHD4 promotes the development of genomic-instability characteristics via epigenetic regulation while shaping an immunosuppressive TME characterized by reduced CD8<sup>&#x002B;</sup> T-cell infiltration and increased immune escape (<xref rid="b51-or-55-6-09112" ref-type="bibr">51</xref>). This suggests that the role of CHD4 extends beyond tumor cells themselves to the tumor immune system interactions on which treatment responses depend.</p>
<p>Notably, CHD4&#x2032;s effect on treatment resistance does not always manifest in the same way but is shaped by specific genetic backgrounds. In BRCA1/2-deficient tumors, CHD4 deletion does not restore HRR ability but instead enhances replication fork stability by inhibiting meiotic recombination 11 homolog 1-mediated replication fork degradation, thereby increasing the resistance of tumor cells to cisplatin and PARP inhibitors (<xref rid="b52-or-55-6-09112" ref-type="bibr">52</xref>). This phenomenon shows that the role of CHD4 cannot be simply summarized as &#x2018;promoting repair&#x2019; or &#x2018;inhibiting repair&#x2019;; its deeper function may lie in regulating how tumor cells respond to replication and treatment stresses. Therefore, its role in tumor treatment resistance is obviously context dependent, and its biological consequences depend on the specifics of the genetic background, repair pathway state, and TME characteristics (<xref rid="f3-or-55-6-09112" ref-type="fig">Fig. 3</xref>).</p>
</sec>
</sec>
</sec>
<sec>
<label>4.</label>
<title>Non-coding RNA (ncRNA)-mediated regulatory network of CHD4</title>
<p>Although CHD4 plays a crucial role in chromatin remodeling, DDR, and tumor therapy resistance, its function is not solely determined by the protein complex itself. In recent years, ncRNAs have increasingly been recognized as significant regulators of CHD4, a key epigenetic hub (<xref rid="b53-or-55-6-09112" ref-type="bibr">53</xref>). In transcriptionally active regions, RNA molecules can directly bind to CHD4, thereby influencing its chromatin-binding capacity and nucleosome-remodeling activity. Studies have shown that CHD4 exhibits a high affinity for RNA molecules rich in guanine (G) and that RNA binding inhibits CHD4&#x2032;s interaction with chromatin and weakens its nucleosome-remodeling ability. Mechanistically, RNA and CHD4 have a competitive binding relationship, which hinders CHD4 from establishing repressive chromatin structures in transcriptional regions and maintains a relatively open chromatin state (<xref rid="b54-or-55-6-09112" ref-type="bibr">54</xref>). Under DNA damage conditions, long ncRNAs can also participate in functional regulation of CHD4. For example, nuclear paraspeckle assembly transcript 1 (<italic>Neat1</italic>) undergoes spatial relocation via N6-methyladenosine modification after DNA damage and acts as a &#x2018;molecular scaffold&#x2019; at the damage site, thereby redistributing the subnuclear localization of CHD4. This process not only helps amplify the damage signal but also promotes assembly of DNA repair complexes (<xref rid="b53-or-55-6-09112" ref-type="bibr">53</xref>). Another class of ncRNAs with active regulatory roles is developmental pluripotency associated 2 upstream binding RNA (<italic>Dubr</italic>). Research has found that <italic>Dubr</italic> can directly interact with the NuRD complex and inhibit the expression of genes related to cell differentiation and morphogenesis by regulating chromatin accessibility at activator protein 1 enhancer regions (<xref rid="b55-or-55-6-09112" ref-type="bibr">55</xref>).</p>
<p>In addition to directly regulating CHD4 activity, various microRNAs (miRNAs or miRs) and circular RNAs (circRNAs) can modulate CHD4 expression levels by affecting its transcription, mRNA stability, or protein degradation. In GC, <italic>circFBXL4</italic> acts as a competing endogenous RNA for miR-146a-5p, relieving its inhibition of signal transducer and activator of transcription 1 and thereby indirectly promoting CHD4 transcription (<xref rid="b56-or-55-6-09112" ref-type="bibr">56</xref>). Meanwhile, hsa-circ-0007396 can &#x2018;adsorb&#x2019; miR-767-3p, weakening its targeting effect on CHD4 mRNA and thus upregulating CHD4 expression (<xref rid="b57-or-55-6-09112" ref-type="bibr">57</xref>). In oral squamous-cell carcinoma, hsa-miR-194-5p can directly target CHD4 and regulate the phosphoinositide 3-kinase/protein kinase B signaling pathway, thereby enhancing cell anti-apoptotic ability and promoting drug resistance (<xref rid="b58-or-55-6-09112" ref-type="bibr">58</xref>). Furthermore, some circRNAs can participate in tumor progression by regulating CHD4 protein stability. For example, in CRC, <italic>circWBSCR22</italic> can inhibit up-frameshift mutation 1 homolog (UPF1)-mediated CHD4 ubiquitination and degradation by binding to UPF1, thereby stabilizing CHD4 protein and promoting EMT, cell invasion and tumor metastasis (<xref rid="b59-or-55-6-09112" ref-type="bibr">59</xref>) (<xref rid="f4-or-55-6-09112" ref-type="fig">Fig. 4</xref>).</p>
<p>In summary, these ncRNAs construct a multi-layered regulatory network by modulating CHD4 localization, activity, transcriptional level and protein stability. This network plays a crucial role in shaping the context-dependent functions of CHD4 and provides new insights into understanding the high plasticity exhibited by tumor cells under therapeutic pressure. Moreover, the interaction between RNA and CHD4 may also serve as a potential therapeutic-intervention target, particularly in tumor therapy resistance and DDR regulation.</p>
</sec>
<sec sec-type="discussion">
<label>5.</label>
<title>Discussion</title>
<p>Recent studies have revealed the high functional plasticity of CHD4 in different biological contexts, a characteristic that has been demonstrated with relative clarity in developmental systems. For example, during cardiac development, CHD4 can form specific regulatory complexes with different TFs, resulting in different transcriptional regulatory outcomes. Studies have shown that the TF T-box transcription factor 5 can recruit CHD4 to the regulatory regions of atrial-related genes, promoting atrial-specific gene expression and maintaining cardiac-rhythm homeostasis in a specific chromatin environment (<xref rid="b60-or-55-6-09112" ref-type="bibr">60</xref>). In other developmental contexts, CHD4 can synergize with TFs such as SET and MYND domain containing 1 (<xref rid="b61-or-55-6-09112" ref-type="bibr">61</xref>) or GATA4/natural killer 2 homeobox 5 (<xref rid="b62-or-55-6-09112" ref-type="bibr">62</xref>) to inhibit non-myocardial-gene expression through the NuRD complex, thereby maintaining the specific transcriptional process of myocardial cells. These studies suggest that the biological function of CHD4 largely depends on its binding TF partners and the local chromatin environment.</p>
<p>Similar context-dependent regulation is also greatly significant in tumors. Current research indicates that CHD4 function shows obvious context dependence by tumor type, which is mainly reflected in tumor progression and therapy resistance. During tumor progression, CHD4-mediated chromatin remodeling (<xref rid="b11-or-55-6-09112" ref-type="bibr">11</xref>) and transcriptional regulation (<xref rid="b13-or-55-6-09112" ref-type="bibr">13</xref>) promote tumor cell proliferation, migration and invasion. However, in specific TRNs, CHD4 may also limit tumor progression by inhibiting abnormal transcriptional processes. In terms of therapy resistance, high expression of CHD4 is usually associated with enhanced DDR capacity (<xref rid="b46-or-55-6-09112" ref-type="bibr">46</xref>) and CT resistance (<xref rid="b47-or-55-6-09112" ref-type="bibr">47</xref>), while against certain genetic backgrounds, CHD4 functional loss may generate alternative drug resistance mechanisms by altering DDR modes or replication fork stability. Therefore, the role of CHD4 in tumors is not unidirectional but is instead influenced by multiple factors such as genetic background, TRNs and chromatin environment.</p>
<p>From the perspective of epigenetic regulation, CHD4 can integrate multiple chromatin modification mechanisms to shape transcriptional states. For example, CHD4 can synergize with HDAC1/2 to regulate chromatin compaction, thereby inhibiting gene transcription. Meanwhile, it can also work with histone methyltransferases [for example, SET domain bifurcated histone lysine methyltransferase 1 (SETDB1) (<xref rid="b63-or-55-6-09112" ref-type="bibr">63</xref>) or EHMT2] to further reinforce gene silencing by maintaining repressive chromatin marks like histone H3-lysine 9 (H3K9) methylation. In addition, in some tumors, CHD4 can synergize with DNA methyltransferases DNMT1 and DNMT3B to maintain abnormal DNA methylation states at the promoter regions of tumor suppressor genes, thereby strengthening transcriptional repression. These different levels of epigenetic modifications jointly determine the transcriptional regulatory effects of CHD4.</p>
<p>In addition to the aforementioned epigenetic modifications, the local chromatin environment may also affect recruitment and function of CHD4. For example, some cancer-associated histone mutations (such as H3.3 G34R) can alter the conformation and dynamic behavior of the histone tail, thereby affecting the interactions between chromatin regulatory proteins such as CHD4 and nucleosomes (<xref rid="b64-or-55-6-09112" ref-type="bibr">64</xref>). Furthermore, studies on SelectID technology have found that the CHD4/NuRD complex can be significantly enriched in methylated DNA regions (<xref rid="b65-or-55-6-09112" ref-type="bibr">65</xref>), suggesting that DNA methylation may help regulate gene expression by recruiting chromatin-remodeling complexes.</p>
<p>At the therapeutic level, the CRN mediated by CHD4 may provide new interventional ideas for epigenetic targeted therapy. For example, the HDAC subunits in the NuRD complex are already important targets of various antitumor drugs, indicating that interfering with CHD4/NuRD complex function may affect tumor-related transcriptional processes. In addition, it has been identified that synthetic-lethality relationships may exist between CHD4 and other epigenetic regulatory factors. For example, dual inactivation of CHD4 and the H3K9 methyltransferase SETDB1 can significantly reduce tumor cell viability (<xref rid="b63-or-55-6-09112" ref-type="bibr">63</xref>). These findings suggest that exploiting the dependencies within the epigenetic regulatory network may provide an important theoretical basis for new combination therapy strategies. The abnormalities of <italic>Chd4</italic> in different tumor types and their corresponding mechanisms are summarized in <xref rid="tI-or-55-6-09112" ref-type="table">Table I</xref>.</p>
<p>In conclusion, the research value of CHD4 lies not only in whether it can be directly targeted but also in how it, as an integration node of the CRN, reshapes the stress response trajectory of tumor cells in different contexts. Future research should analyze the context-dependent regulatory mechanisms of CHD4 at the system level by, for example, systematically analyzing its chromatin-binding profile, NuRD complex assembly mode, and DNA repair pathway selection and combining emerging technologies such as single-cell multi-omics and spatial transcriptomics to provide new theoretical bases for CRN-based intervention strategies in precision tumor therapy.</p>
</sec>
</body>
<back>
<ack>
<title>Acknowledgements</title>
<p>Not applicable.</p>
</ack>
<sec sec-type="data-availability">
<title>Availability of data and materials</title>
<p>Not applicable.</p>
</sec>
<sec>
<title>Authors&#x0027; contributions</title>
<p>SL contributed to the conception and design of the review, performed comprehensive literature analysis and interpretation, and drafted the manuscript. QM contributed to literature acquisition, analysis and interpretation, and participated in manuscript drafting and revision. KL contributed to literature analysis and organization, figure and table preparation, and manuscript revision. ZJ contributed to critical analysis and interpretation of the literature and revised the manuscript critically for important intellectual content. YM conceived and supervised the study, contributed to interpretation of the literature, critically revised the manuscript, and gave final approval of the version to be published. All authors read and approved the final version of the manuscript and agree to be accountable for all aspects of the work. Data authentication is not applicable.</p>
</sec>
<sec>
<title>Ethics approval and consent to participate</title>
<p>Not applicable.</p>
</sec>
<sec>
<title>Patient consent for publication</title>
<p>Not applicable.</p>
</sec>
<sec sec-type="COI-statement">
<title>Competing interests</title>
<p>The authors declare that they have no competing interests.</p>
</sec>
<ref-list>
<title>References</title>
<ref id="b1-or-55-6-09112"><label>1</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Hanahan</surname><given-names>D</given-names></name></person-group><article-title>Hallmarks of cancer: New dimensions</article-title><source>Cancer Discov</source><volume>12</volume><fpage>31</fpage><lpage>46</lpage><year>2022</year><pub-id pub-id-type="doi">10.1158/2159-8290.CD-21-1059</pub-id><pub-id pub-id-type="pmid">35022204</pub-id></element-citation></ref>
<ref id="b2-or-55-6-09112"><label>2</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Esteller</surname><given-names>M</given-names></name><name><surname>Dawson</surname><given-names>MA</given-names></name><name><surname>Kadoch</surname><given-names>C</given-names></name><name><surname>Rassool</surname><given-names>FV</given-names></name><name><surname>Jones</surname><given-names>PA</given-names></name><name><surname>Baylin</surname><given-names>SB</given-names></name></person-group><article-title>The epigenetic hallmarks of cancer</article-title><source>Cancer Discov</source><volume>14</volume><fpage>1783</fpage><lpage>1809</lpage><year>2024</year><pub-id pub-id-type="doi">10.1158/2159-8290.CD-24-0296</pub-id><pub-id pub-id-type="pmid">39363741</pub-id></element-citation></ref>
<ref id="b3-or-55-6-09112"><label>3</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Sanchez-Vega</surname><given-names>F</given-names></name><name><surname>Mina</surname><given-names>M</given-names></name><name><surname>Armenia</surname><given-names>J</given-names></name><name><surname>Chatila</surname><given-names>WK</given-names></name><name><surname>Luna</surname><given-names>A</given-names></name><name><surname>La</surname><given-names>KC</given-names></name><name><surname>Dimitriadoy</surname><given-names>S</given-names></name><name><surname>Liu</surname><given-names>DL</given-names></name><name><surname>Kantheti</surname><given-names>HS</given-names></name><name><surname>Saghafinia</surname><given-names>S</given-names></name><etal/></person-group><article-title>Oncogenic signaling pathways in the cancer genome atlas</article-title><source>Cell</source><volume>173</volume><fpage>321</fpage><lpage>337.e10</lpage><year>2018</year><pub-id pub-id-type="doi">10.1016/j.cell.2018.03.035</pub-id><pub-id pub-id-type="pmid">29625050</pub-id></element-citation></ref>
<ref id="b4-or-55-6-09112"><label>4</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>ICGC/TCGA Pan-Cancer Analysis of Whole Genomes</surname><given-names>Consortium</given-names></name></person-group><article-title>Pan-cancer analysis of whole genomes</article-title><source>Nature</source><volume>578</volume><fpage>82</fpage><lpage>93</lpage><year>2020</year><pub-id pub-id-type="doi">10.1038/s41586-020-1969-6</pub-id><pub-id pub-id-type="pmid">32025007</pub-id></element-citation></ref>
<ref id="b5-or-55-6-09112"><label>5</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Xu</surname><given-names>X</given-names></name><name><surname>Peng</surname><given-names>Q</given-names></name><name><surname>Jiang</surname><given-names>X</given-names></name><name><surname>Tan</surname><given-names>S</given-names></name><name><surname>Yang</surname><given-names>Y</given-names></name><name><surname>Yang</surname><given-names>W</given-names></name><name><surname>Han</surname><given-names>Y</given-names></name><name><surname>Chen</surname><given-names>Y</given-names></name><name><surname>Oyang</surname><given-names>L</given-names></name><name><surname>Lin</surname><given-names>J</given-names></name><etal/></person-group><article-title>Metabolic reprogramming and epigenetic modifications in cancer: From the impacts and mechanisms to the treatment potential</article-title><source>Exp Mol Med</source><volume>55</volume><fpage>1357</fpage><lpage>1370</lpage><year>2023</year><pub-id pub-id-type="doi">10.1038/s12276-023-01020-1</pub-id><pub-id pub-id-type="pmid">37394582</pub-id></element-citation></ref>
<ref id="b6-or-55-6-09112"><label>6</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Boulasiki</surname><given-names>P</given-names></name><name><surname>Tan</surname><given-names>XW</given-names></name><name><surname>Spinelli</surname><given-names>M</given-names></name><name><surname>Riccio</surname><given-names>A</given-names></name></person-group><article-title>The NuRD complex in neurodevelopment and disease: A case of sliding doors</article-title><source>Cells</source><volume>12</volume><fpage>1179</fpage><year>2023</year><pub-id pub-id-type="doi">10.3390/cells12081179</pub-id><pub-id pub-id-type="pmid">37190088</pub-id></element-citation></ref>
<ref id="b7-or-55-6-09112"><label>7</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Low</surname><given-names>JKK</given-names></name><name><surname>Silva</surname><given-names>APG</given-names></name><name><surname>Sharifi Tabar</surname><given-names>M</given-names></name><name><surname>Torrado</surname><given-names>M</given-names></name><name><surname>Webb</surname><given-names>SR</given-names></name><name><surname>Parker</surname><given-names>BL</given-names></name><name><surname>Sana</surname><given-names>M</given-names></name><name><surname>Smits</surname><given-names>C</given-names></name><name><surname>Schmidberger</surname><given-names>JW</given-names></name><name><surname>Brillault</surname><given-names>L</given-names></name><etal/></person-group><article-title>The nucleosome remodeling and deacetylase complex has an asymmetric, dynamic, and modular architecture</article-title><source>Cell Rep</source><volume>33</volume><fpage>108450</fpage><year>2020</year><pub-id pub-id-type="doi">10.1016/j.celrep.2020.108450</pub-id><pub-id pub-id-type="pmid">33264611</pub-id></element-citation></ref>
<ref id="b8-or-55-6-09112"><label>8</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Musselman</surname><given-names>CA</given-names></name><name><surname>Ram&#x00ED;rez</surname><given-names>J</given-names></name><name><surname>Sims</surname><given-names>JK</given-names></name><name><surname>Mansfield</surname><given-names>RE</given-names></name><name><surname>Oliver</surname><given-names>SS</given-names></name><name><surname>Denu</surname><given-names>JM</given-names></name><name><surname>Mackay</surname><given-names>JP</given-names></name><name><surname>Wade</surname><given-names>PA</given-names></name><name><surname>Hagman</surname><given-names>J</given-names></name><name><surname>Kutateladze</surname><given-names>TG</given-names></name></person-group><article-title>Bivalent recognition of nucleosomes by the tandem PHD fingers of the CHD4 ATPase is required for CHD4-mediated repression</article-title><source>Proc Natl Acad Sci USA</source><volume>109</volume><fpage>787</fpage><lpage>792</lpage><year>2012</year><pub-id pub-id-type="doi">10.1073/pnas.1113655109</pub-id><pub-id pub-id-type="pmid">22215588</pub-id></element-citation></ref>
<ref id="b9-or-55-6-09112"><label>9</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Farnung</surname><given-names>L</given-names></name><name><surname>Ochmann</surname><given-names>M</given-names></name><name><surname>Cramer</surname><given-names>P</given-names></name></person-group><article-title>Nucleosome-CHD4 chromatin remodeler structure maps human disease mutations</article-title><source>eLife</source><volume>9</volume><fpage>e56178</fpage><year>2020</year><pub-id pub-id-type="doi">10.7554/eLife.56178</pub-id><pub-id pub-id-type="pmid">32543371</pub-id></element-citation></ref>
<ref id="b10-or-55-6-09112"><label>10</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Zhong</surname><given-names>Y</given-names></name><name><surname>Moghaddas Sani</surname><given-names>H</given-names></name><name><surname>Paudel</surname><given-names>BP</given-names></name><name><surname>Low</surname><given-names>JKK</given-names></name><name><surname>Silva</surname><given-names>APG</given-names></name><name><surname>Mueller</surname><given-names>S</given-names></name><name><surname>Deshpande</surname><given-names>C</given-names></name><name><surname>Panjikar</surname><given-names>S</given-names></name><name><surname>Reid</surname><given-names>XJ</given-names></name><name><surname>Bedward</surname><given-names>MJ</given-names></name><etal/></person-group><article-title>The role of auxiliary domains in modulating CHD4 activity suggests mechanistic commonality between enzyme families</article-title><source>Nat Commun</source><volume>13</volume><fpage>7524</fpage><year>2022</year><pub-id pub-id-type="doi">10.1038/s41467-022-35002-0</pub-id><pub-id pub-id-type="pmid">36473839</pub-id></element-citation></ref>
<ref id="b11-or-55-6-09112"><label>11</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Saotome</surname><given-names>M</given-names></name><name><surname>Poduval</surname><given-names>DB</given-names></name><name><surname>Grimm</surname><given-names>SA</given-names></name><name><surname>Nagornyuk</surname><given-names>A</given-names></name><name><surname>Gunarathna</surname><given-names>S</given-names></name><name><surname>Shimbo</surname><given-names>T</given-names></name><name><surname>Wade</surname><given-names>PA</given-names></name><name><surname>Takaku</surname><given-names>M</given-names></name></person-group><article-title>Genomic transcription factor binding site selection is edited by the chromatin remodeling factor CHD4</article-title><source>Nucleic Acids Res</source><volume>52</volume><fpage>3607</fpage><lpage>3622</lpage><year>2024</year><pub-id pub-id-type="doi">10.1093/nar/gkae025</pub-id><pub-id pub-id-type="pmid">38281186</pub-id></element-citation></ref>
<ref id="b12-or-55-6-09112"><label>12</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Pan</surname><given-names>MR</given-names></name><name><surname>Hsieh</surname><given-names>HJ</given-names></name><name><surname>Dai</surname><given-names>H</given-names></name><name><surname>Hung</surname><given-names>WC</given-names></name><name><surname>Li</surname><given-names>K</given-names></name><name><surname>Peng</surname><given-names>G</given-names></name><name><surname>Lin</surname><given-names>SY</given-names></name></person-group><article-title>Chromodomain helicase DNA-binding protein 4 (CHD4) regulates homologous recombination DNA repair, and its deficiency sensitizes cells to poly(ADP-ribose) polymerase (PARP) inhibitor treatment</article-title><source>J Biol Chem</source><volume>287</volume><fpage>6764</fpage><lpage>6772</lpage><year>2012</year><pub-id pub-id-type="doi">10.1074/jbc.M111.287037</pub-id><pub-id pub-id-type="pmid">22219182</pub-id></element-citation></ref>
<ref id="b13-or-55-6-09112"><label>13</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Graca Marques</surname><given-names>J</given-names></name><name><surname>Pavlovic</surname><given-names>B</given-names></name><name><surname>Ngo</surname><given-names>QA</given-names></name><name><surname>Pedot</surname><given-names>G</given-names></name><name><surname>Roemmele</surname><given-names>M</given-names></name><name><surname>Volken</surname><given-names>L</given-names></name><name><surname>Kisele</surname><given-names>S</given-names></name><name><surname>Perbet</surname><given-names>R</given-names></name><name><surname>Wachtel</surname><given-names>M</given-names></name><name><surname>Sch&#x00E4;fer</surname><given-names>BW</given-names></name></person-group><article-title>The chromatin remodeler CHD4 sustains ewing sarcoma cell survival by controlling global chromatin architecture</article-title><source>Cancer Res</source><volume>84</volume><fpage>241</fpage><lpage>257</lpage><year>2024</year><pub-id pub-id-type="doi">10.1158/0008-5472.CAN-22-3950</pub-id><pub-id pub-id-type="pmid">37963210</pub-id></element-citation></ref>
<ref id="b14-or-55-6-09112"><label>14</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Sperlazza</surname><given-names>J</given-names></name><name><surname>Rahmani</surname><given-names>M</given-names></name><name><surname>Beckta</surname><given-names>J</given-names></name><name><surname>Aust</surname><given-names>M</given-names></name><name><surname>Hawkins</surname><given-names>E</given-names></name><name><surname>Wang</surname><given-names>SZ</given-names></name><name><surname>Zu Zhu</surname><given-names>S</given-names></name><name><surname>Podder</surname><given-names>S</given-names></name><name><surname>Dumur</surname><given-names>C</given-names></name><name><surname>Archer</surname><given-names>K</given-names></name><etal/></person-group><article-title>Depletion of the chromatin remodeler CHD4 sensitizes AML blasts to genotoxic agents and reduces tumor formation</article-title><source>Blood</source><volume>126</volume><fpage>1462</fpage><lpage>1472</lpage><year>2015</year><pub-id pub-id-type="doi">10.1182/blood-2015-03-631606</pub-id><pub-id pub-id-type="pmid">26265695</pub-id></element-citation></ref>
<ref id="b15-or-55-6-09112"><label>15</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Zhang</surname><given-names>Q</given-names></name><name><surname>Zhu</surname><given-names>F</given-names></name><name><surname>Tong</surname><given-names>Y</given-names></name><name><surname>Shi</surname><given-names>D</given-names></name><name><surname>Zhang</surname><given-names>J</given-names></name></person-group><article-title>CHD4 R975H mutant activates tumorigenic pathways and promotes stemness and M2-like macrophage polarization in endometrial cancer</article-title><source>Sci Rep</source><volume>14</volume><fpage>18617</fpage><year>2024</year><pub-id pub-id-type="doi">10.1038/s41598-024-69233-6</pub-id><pub-id pub-id-type="pmid">39127769</pub-id></element-citation></ref>
<ref id="b16-or-55-6-09112"><label>16</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Reske</surname><given-names>JJ</given-names></name><name><surname>Wilson</surname><given-names>MR</given-names></name><name><surname>Armistead</surname><given-names>B</given-names></name><name><surname>Harkins</surname><given-names>S</given-names></name><name><surname>Perez</surname><given-names>C</given-names></name><name><surname>Hrit</surname><given-names>J</given-names></name><name><surname>Adams</surname><given-names>M</given-names></name><name><surname>Rothbart</surname><given-names>SB</given-names></name><name><surname>Missmer</surname><given-names>SA</given-names></name><name><surname>Fazleabas</surname><given-names>AT</given-names></name><name><surname>Chandler</surname><given-names>RL</given-names></name></person-group><article-title>ARID1A-dependent maintenance of H3.3 is required for repressive CHD4-ZMYND8 chromatin interactions at super-enhancers</article-title><source>BMC Biol</source><volume>20</volume><fpage>209</fpage><year>2022</year><pub-id pub-id-type="doi">10.1186/s12915-022-01407-y</pub-id><pub-id pub-id-type="pmid">36153585</pub-id></element-citation></ref>
<ref id="b17-or-55-6-09112"><label>17</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Goswami</surname><given-names>K</given-names></name><name><surname>Venkatachalam</surname><given-names>K</given-names></name><name><surname>Singh</surname><given-names>SP</given-names></name><name><surname>Rao</surname><given-names>CV</given-names></name><name><surname>Madka</surname><given-names>V</given-names></name></person-group><article-title>Chromatin Remodulator CHD4: A Potential Target for Cancer Interception</article-title><source>Genes (Basel)</source><volume>16</volume><fpage>225</fpage><year>2025</year><pub-id pub-id-type="doi">10.3390/genes16020225</pub-id><pub-id pub-id-type="pmid">40004553</pub-id></element-citation></ref>
<ref id="b18-or-55-6-09112"><label>18</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Shi</surname><given-names>Y</given-names></name><name><surname>Zhao</surname><given-names>Z</given-names></name><name><surname>Zhou</surname><given-names>S</given-names></name><name><surname>Zhou</surname><given-names>Z</given-names></name><name><surname>Huang</surname><given-names>Z</given-names></name><name><surname>Zhou</surname><given-names>Z</given-names></name><name><surname>Zhang</surname><given-names>C</given-names></name></person-group><article-title>CHD4 drives gastric cancer metastasis via MYH9/GSK3&#x03B2;/&#x03B2;-catenin axis and WNT/EMT pathway activation</article-title><source>Cancer Lett</source><volume>628</volume><fpage>217813</fpage><year>2025</year><pub-id pub-id-type="doi">10.1016/j.canlet.2025.217813</pub-id><pub-id pub-id-type="pmid">40480417</pub-id></element-citation></ref>
<ref id="b19-or-55-6-09112"><label>19</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Wang</surname><given-names>J</given-names></name><name><surname>Zhong</surname><given-names>F</given-names></name><name><surname>Li</surname><given-names>J</given-names></name><name><surname>Yue</surname><given-names>H</given-names></name><name><surname>Li</surname><given-names>W</given-names></name><name><surname>Lu</surname><given-names>X</given-names></name></person-group><article-title>The epigenetic factor CHD4 contributes to metastasis by regulating the EZH2/&#x03B2;-catenin axis and acts as a therapeutic target in ovarian cancer</article-title><source>J Transl Med</source><volume>21</volume><fpage>38</fpage><year>2023</year><pub-id pub-id-type="doi">10.1186/s12967-022-03854-1</pub-id><pub-id pub-id-type="pmid">36681835</pub-id></element-citation></ref>
<ref id="b20-or-55-6-09112"><label>20</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Xu</surname><given-names>N</given-names></name><name><surname>Liu</surname><given-names>F</given-names></name><name><surname>Wu</surname><given-names>S</given-names></name><name><surname>Ye</surname><given-names>M</given-names></name><name><surname>Ge</surname><given-names>H</given-names></name><name><surname>Zhang</surname><given-names>M</given-names></name><name><surname>Song</surname><given-names>Y</given-names></name><name><surname>Tong</surname><given-names>L</given-names></name><name><surname>Zhou</surname><given-names>J</given-names></name><name><surname>Bai</surname><given-names>C</given-names></name></person-group><article-title>CHD4 mediates proliferation and migration of non-small cell lung cancer via the RhoA/ROCK pathway by regulating PHF5A</article-title><source>BMC Cancer</source><volume>20</volume><fpage>262</fpage><year>2020</year><pub-id pub-id-type="doi">10.1186/s12885-020-06762-z</pub-id><pub-id pub-id-type="pmid">32228507</pub-id></element-citation></ref>
<ref id="b21-or-55-6-09112"><label>21</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Sattout</surname><given-names>A</given-names></name><name><surname>Yu</surname><given-names>X</given-names></name><name><surname>Sun</surname><given-names>Z</given-names></name><name><surname>Li</surname><given-names>Y</given-names></name><name><surname>Li</surname><given-names>Y</given-names></name><name><surname>Li</surname><given-names>S</given-names></name><name><surname>Huo</surname><given-names>W</given-names></name><name><surname>Wu</surname><given-names>H</given-names></name></person-group><article-title>CHD4-induced up-regulation of ER&#x03B1; activity contributes to breast cancer progression</article-title><source>Genes Dis</source><volume>11</volume><fpage>101108</fpage><year>2024</year><pub-id pub-id-type="doi">10.1016/j.gendis.2023.101108</pub-id><pub-id pub-id-type="pmid">38292202</pub-id></element-citation></ref>
<ref id="b22-or-55-6-09112"><label>22</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Wang</surname><given-names>Y</given-names></name><name><surname>Chen</surname><given-names>Y</given-names></name><name><surname>Bao</surname><given-names>L</given-names></name><name><surname>Zhang</surname><given-names>B</given-names></name><name><surname>Wang</surname><given-names>JE</given-names></name><name><surname>Kumar</surname><given-names>A</given-names></name><name><surname>Xing</surname><given-names>C</given-names></name><name><surname>Wang</surname><given-names>Y</given-names></name><name><surname>Luo</surname><given-names>W</given-names></name></person-group><article-title>CHD4 promotes breast cancer progression as a coactivator of Hypoxia-inducible factors</article-title><source>Cancer Res</source><volume>80</volume><fpage>3880</fpage><lpage>3891</lpage><year>2020</year><pub-id pub-id-type="doi">10.1158/0008-5472.CAN-20-1049</pub-id><pub-id pub-id-type="pmid">32699137</pub-id></element-citation></ref>
<ref id="b23-or-55-6-09112"><label>23</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Coassolo</surname><given-names>S</given-names></name><name><surname>Davidson</surname><given-names>G</given-names></name><name><surname>Negroni</surname><given-names>L</given-names></name><name><surname>Gambi</surname><given-names>G</given-names></name><name><surname>Daujat</surname><given-names>S</given-names></name><name><surname>Romier</surname><given-names>C</given-names></name><name><surname>Davidson</surname><given-names>I</given-names></name></person-group><article-title>Citrullination of pyruvate kinase M2 by PADI1 and PADI3 regulates glycolysis and cancer cell proliferation</article-title><source>Nat Commun</source><volume>12</volume><fpage>1718</fpage><year>2021</year><pub-id pub-id-type="doi">10.1038/s41467-021-21960-4</pub-id><pub-id pub-id-type="pmid">33741961</pub-id></element-citation></ref>
<ref id="b24-or-55-6-09112"><label>24</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Xia</surname><given-names>L</given-names></name><name><surname>Huang</surname><given-names>W</given-names></name><name><surname>Bellani</surname><given-names>M</given-names></name><name><surname>Seidman</surname><given-names>MM</given-names></name><name><surname>Wu</surname><given-names>K</given-names></name><name><surname>Fan</surname><given-names>D</given-names></name><name><surname>Nie</surname><given-names>Y</given-names></name><name><surname>Cai</surname><given-names>Y</given-names></name><name><surname>Zhang</surname><given-names>YW</given-names></name><name><surname>Yu</surname><given-names>LR</given-names></name><etal/></person-group><article-title>CHD4 has oncogenic functions in initiating and maintaining epigenetic suppression of multiple tumor suppressor genes</article-title><source>Cancer Cell</source><volume>31</volume><fpage>653</fpage><lpage>668.e7</lpage><year>2017</year><pub-id pub-id-type="doi">10.1016/j.ccell.2017.04.005</pub-id><pub-id pub-id-type="pmid">28486105</pub-id></element-citation></ref>
<ref id="b25-or-55-6-09112"><label>25</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Cai</surname><given-names>Y</given-names></name><name><surname>Geutjes</surname><given-names>EJ</given-names></name><name><surname>de Lint</surname><given-names>K</given-names></name><name><surname>Roepman</surname><given-names>P</given-names></name><name><surname>Bruurs</surname><given-names>L</given-names></name><name><surname>Yu</surname><given-names>LR</given-names></name><name><surname>Wang</surname><given-names>W</given-names></name><name><surname>van Blijswijk</surname><given-names>J</given-names></name><name><surname>Mohammad</surname><given-names>H</given-names></name><name><surname>de Rink</surname><given-names>I</given-names></name><etal/></person-group><article-title>The NuRD complex cooperates with DNMTs to maintain silencing of key colorectal tumor suppressor genes</article-title><source>Oncogene</source><volume>33</volume><fpage>2157</fpage><lpage>2168</lpage><year>2014</year><pub-id pub-id-type="doi">10.1038/onc.2013.178</pub-id><pub-id pub-id-type="pmid">23708667</pub-id></element-citation></ref>
<ref id="b26-or-55-6-09112"><label>26</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Wang</surname><given-names>Y</given-names></name><name><surname>Lin</surname><given-names>X</given-names></name><name><surname>Gong</surname><given-names>X</given-names></name><name><surname>Wu</surname><given-names>L</given-names></name><name><surname>Zhang</surname><given-names>J</given-names></name><name><surname>Liu</surname><given-names>W</given-names></name><name><surname>Li</surname><given-names>J</given-names></name><name><surname>Chen</surname><given-names>L</given-names></name></person-group><article-title>Atypical GATA transcription factor TRPS1 represses gene expression by recruiting CHD4/NuRD(MTA2) and suppresses cell migration and invasion by repressing TP63 expression</article-title><source>Oncogenesis</source><volume>7</volume><fpage>96</fpage><year>2018</year><pub-id pub-id-type="doi">10.1038/s41389-018-0108-9</pub-id><pub-id pub-id-type="pmid">30563971</pub-id></element-citation></ref>
<ref id="b27-or-55-6-09112"><label>27</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Zhang</surname><given-names>J</given-names></name><name><surname>Lv</surname><given-names>X</given-names></name><name><surname>Wei</surname><given-names>B</given-names></name><name><surname>Gong</surname><given-names>X</given-names></name><name><surname>Chen</surname><given-names>L</given-names></name></person-group><article-title>CHD4 mediates SOX2 transcription through TRPS1 in luminal breast cancer</article-title><source>Cell Signal</source><volume>100</volume><fpage>110464</fpage><year>2022</year><pub-id pub-id-type="doi">10.1016/j.cellsig.2022.110464</pub-id><pub-id pub-id-type="pmid">36075559</pub-id></element-citation></ref>
<ref id="b28-or-55-6-09112"><label>28</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Kova&#x010D;</surname><given-names>K</given-names></name><name><surname>Sauer</surname><given-names>A</given-names></name><name><surname>Ma&#x010D;inkovi&#x0107;</surname><given-names>I</given-names></name><name><surname>Awe</surname><given-names>S</given-names></name><name><surname>Finkernagel</surname><given-names>F</given-names></name><name><surname>Hoffmeister</surname><given-names>H</given-names></name><name><surname>Fuchs</surname><given-names>A</given-names></name><name><surname>M&#x00FC;ller</surname><given-names>R</given-names></name><name><surname>Rathke</surname><given-names>C</given-names></name><name><surname>L&#x00E4;ngst</surname><given-names>G</given-names></name><name><surname>Brehm</surname><given-names>A</given-names></name></person-group><article-title>Tumour-associated missense mutations in the dMi-2 ATPase alters nucleosome remodelling properties in a mutation-specific manner</article-title><source>Nat Commun</source><volume>9</volume><fpage>2112</fpage><year>2018</year><pub-id pub-id-type="doi">10.1038/s41467-018-04503-2</pub-id><pub-id pub-id-type="pmid">29844320</pub-id></element-citation></ref>
<ref id="b29-or-55-6-09112"><label>29</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Li</surname><given-names>Y</given-names></name><name><surname>Liu</surname><given-names>Q</given-names></name><name><surname>McGrail</surname><given-names>DJ</given-names></name><name><surname>Dai</surname><given-names>H</given-names></name><name><surname>Li</surname><given-names>K</given-names></name><name><surname>Lin</surname><given-names>SY</given-names></name></person-group><article-title>CHD4 mutations promote endometrial cancer stemness by activating TGF-beta signaling</article-title><source>Am J Cancer Res</source><volume>8</volume><fpage>903</fpage><lpage>914</lpage><year>2018</year><pub-id pub-id-type="pmid">29888111</pub-id></element-citation></ref>
<ref id="b30-or-55-6-09112"><label>30</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Dong</surname><given-names>H</given-names></name><name><surname>Zhao</surname><given-names>J</given-names></name><name><surname>Zhang</surname><given-names>B</given-names></name><name><surname>Wu</surname><given-names>X</given-names></name><name><surname>Liu</surname><given-names>G</given-names></name></person-group><article-title>Case report: Novel mutation in CHD4 triggers occult breast cancer with bone metastases</article-title><source>Front Oncol</source><volume>15</volume><fpage>1682794</fpage><year>2025</year><pub-id pub-id-type="doi">10.3389/fonc.2025.1682794</pub-id><pub-id pub-id-type="pmid">41089506</pub-id></element-citation></ref>
<ref id="b31-or-55-6-09112"><label>31</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Gong</surname><given-names>P</given-names></name><name><surname>Guo</surname><given-names>Z</given-names></name><name><surname>Wang</surname><given-names>S</given-names></name><name><surname>Gao</surname><given-names>S</given-names></name><name><surname>Cao</surname><given-names>Q</given-names></name></person-group><article-title>Histone phosphorylation in DNA damage response</article-title><source>Int J Mol Sci</source><volume>26</volume><fpage>2405</fpage><year>2025</year><pub-id pub-id-type="doi">10.3390/ijms26062405</pub-id><pub-id pub-id-type="pmid">40141048</pub-id></element-citation></ref>
<ref id="b32-or-55-6-09112"><label>32</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Smith</surname><given-names>R</given-names></name><name><surname>Sellou</surname><given-names>H</given-names></name><name><surname>Chapuis</surname><given-names>C</given-names></name><name><surname>Huet</surname><given-names>S</given-names></name><name><surname>Timinszky</surname><given-names>G</given-names></name></person-group><article-title>CHD3 and CHD4 recruitment and chromatin remodeling activity at DNA breaks is promoted by early poly(ADP-ribose)-dependent chromatin relaxation</article-title><source>Nucleic Acids Res</source><volume>46</volume><fpage>6087</fpage><lpage>6098</lpage><year>2018</year><pub-id pub-id-type="doi">10.1093/nar/gky334</pub-id><pub-id pub-id-type="pmid">29733391</pub-id></element-citation></ref>
<ref id="b33-or-55-6-09112"><label>33</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Zhang</surname><given-names>H</given-names></name><name><surname>Zha</surname><given-names>S</given-names></name></person-group><article-title>The dynamics and regulation of PARP1 and PARP2 in response to DNA damage and during replication</article-title><source>DNA Repair (Amst)</source><volume>140</volume><fpage>103690</fpage><year>2024</year><pub-id pub-id-type="doi">10.1016/j.dnarep.2024.103690</pub-id><pub-id pub-id-type="pmid">38823186</pub-id></element-citation></ref>
<ref id="b34-or-55-6-09112"><label>34</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Qi</surname><given-names>W</given-names></name><name><surname>Chen</surname><given-names>H</given-names></name><name><surname>Xiao</surname><given-names>T</given-names></name><name><surname>Wang</surname><given-names>R</given-names></name><name><surname>Li</surname><given-names>T</given-names></name><name><surname>Han</surname><given-names>L</given-names></name><name><surname>Zeng</surname><given-names>X</given-names></name></person-group><article-title>Acetyltransferase p300 collaborates with chromodomain helicase DNA-binding protein 4 (CHD4) to facilitate DNA double-strand break repair</article-title><source>Mutagenesis</source><volume>31</volume><fpage>193</fpage><lpage>203</lpage><year>2016</year><pub-id pub-id-type="doi">10.1093/mutage/gev075</pub-id><pub-id pub-id-type="pmid">26546801</pub-id></element-citation></ref>
<ref id="b35-or-55-6-09112"><label>35</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Tan</surname><given-names>Q</given-names></name><name><surname>Niu</surname><given-names>K</given-names></name><name><surname>Zhu</surname><given-names>Y</given-names></name><name><surname>Chen</surname><given-names>Z</given-names></name><name><surname>Li</surname><given-names>Y</given-names></name><name><surname>Li</surname><given-names>M</given-names></name><name><surname>Wei</surname><given-names>D</given-names></name><name><surname>Balajee</surname><given-names>AS</given-names></name><name><surname>Fang</surname><given-names>H</given-names></name><name><surname>Zhao</surname><given-names>Y</given-names></name></person-group><article-title>RNF8 ubiquitinates RecQL4 and promotes its dissociation from DNA double strand breaks</article-title><source>Oncogenesis</source><volume>10</volume><fpage>24</fpage><year>2021</year><pub-id pub-id-type="doi">10.1038/s41389-021-00315-0</pub-id><pub-id pub-id-type="pmid">33674555</pub-id></element-citation></ref>
<ref id="b36-or-55-6-09112"><label>36</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Luijsterburg</surname><given-names>MS</given-names></name><name><surname>Acs</surname><given-names>K</given-names></name><name><surname>Ackermann</surname><given-names>L</given-names></name><name><surname>Wiegant</surname><given-names>WW</given-names></name><name><surname>Bekker-Jensen</surname><given-names>S</given-names></name><name><surname>Larsen</surname><given-names>DH</given-names></name><name><surname>Khanna</surname><given-names>KK</given-names></name><name><surname>van Attikum</surname><given-names>H</given-names></name><name><surname>Mailand</surname><given-names>N</given-names></name><name><surname>Dantuma</surname><given-names>NP</given-names></name></person-group><article-title>A new non-catalytic role for ubiquitin ligase RNF8 in unfolding higher-order chromatin structure</article-title><source>EMBO J</source><volume>31</volume><fpage>2511</fpage><lpage>2527</lpage><year>2012</year><pub-id pub-id-type="doi">10.1038/emboj.2012.104</pub-id><pub-id pub-id-type="pmid">22531782</pub-id></element-citation></ref>
<ref id="b37-or-55-6-09112"><label>37</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Onn</surname><given-names>L</given-names></name><name><surname>Portillo</surname><given-names>M</given-names></name><name><surname>Ilic</surname><given-names>S</given-names></name><name><surname>Cleitman</surname><given-names>G</given-names></name><name><surname>Stein</surname><given-names>D</given-names></name><name><surname>Kaluski</surname><given-names>S</given-names></name><name><surname>Shirat</surname><given-names>I</given-names></name><name><surname>Slobodnik</surname><given-names>Z</given-names></name><name><surname>Einav</surname><given-names>M</given-names></name><name><surname>Erdel</surname><given-names>F</given-names></name><etal/></person-group><article-title>SIRT6 is a DNA double-strand break sensor</article-title><source>ELife</source><volume>9</volume><fpage>e51636</fpage><year>2020</year><pub-id pub-id-type="doi">10.7554/eLife.51636</pub-id><pub-id pub-id-type="pmid">31995034</pub-id></element-citation></ref>
<ref id="b38-or-55-6-09112"><label>38</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Hou</surname><given-names>T</given-names></name><name><surname>Cao</surname><given-names>Z</given-names></name><name><surname>Zhang</surname><given-names>J</given-names></name><name><surname>Tang</surname><given-names>M</given-names></name><name><surname>Tian</surname><given-names>Y</given-names></name><name><surname>Li</surname><given-names>Y</given-names></name><name><surname>Lu</surname><given-names>X</given-names></name><name><surname>Chen</surname><given-names>Y</given-names></name><name><surname>Wang</surname><given-names>H</given-names></name><name><surname>Wei</surname><given-names>FZ</given-names></name><etal/></person-group><article-title>SIRT6 coordinates with CHD4 to promote chromatin relaxation and DNA repair</article-title><source>Nucleic Acids Res</source><volume>48</volume><fpage>2982</fpage><lpage>3000</lpage><year>2020</year><pub-id pub-id-type="doi">10.1093/nar/gkaa006</pub-id><pub-id pub-id-type="pmid">31970415</pub-id></element-citation></ref>
<ref id="b39-or-55-6-09112"><label>39</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Qian</surname><given-names>J</given-names></name><name><surname>Watanabe</surname><given-names>T</given-names></name><name><surname>Watanabe</surname><given-names>R</given-names></name><name><surname>Kanno</surname><given-names>SI</given-names></name><name><surname>Takahashi</surname><given-names>A</given-names></name><name><surname>Kohsaka</surname><given-names>S</given-names></name><name><surname>Yoshino</surname><given-names>Y</given-names></name><name><surname>Chiba</surname><given-names>N</given-names></name><name><surname>Tanaka</surname><given-names>K</given-names></name><name><surname>Kohno</surname><given-names>T</given-names></name><etal/></person-group><article-title>BET family BRD3 initiates DSB-induced chromatin remodeling with TIP60 to promote R-loop-mediated HR</article-title><source>Cell Reps</source><volume>44</volume><fpage>116461</fpage><year>2025</year><pub-id pub-id-type="doi">10.1016/j.celrep.2025.116461</pub-id><pub-id pub-id-type="pmid">41134669</pub-id></element-citation></ref>
<ref id="b40-or-55-6-09112"><label>40</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Neizer-Ashun</surname><given-names>F</given-names></name><name><surname>Bhattacharya</surname><given-names>R</given-names></name></person-group><article-title>Reality CHEK: Understanding the biology and clinical potential of CHK1</article-title><source>Cancer Lett</source><volume>497</volume><fpage>202</fpage><lpage>211</lpage><year>2021</year><pub-id pub-id-type="doi">10.1016/j.canlet.2020.09.016</pub-id><pub-id pub-id-type="pmid">32991949</pub-id></element-citation></ref>
<ref id="b41-or-55-6-09112"><label>41</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Geyer</surname><given-names>F</given-names></name><name><surname>Geyer</surname><given-names>M</given-names></name><name><surname>Reuning</surname><given-names>U</given-names></name><name><surname>Klapproth</surname><given-names>S</given-names></name><name><surname>Wolff</surname><given-names>KD</given-names></name><name><surname>Nieberler</surname><given-names>M</given-names></name></person-group><article-title>CHD4 acts as a prognostic factor and drives radioresistance in HPV negative HNSCC</article-title><source>Sci Rep</source><volume>14</volume><fpage>8286</fpage><year>2024</year><pub-id pub-id-type="doi">10.1038/s41598-024-58958-z</pub-id><pub-id pub-id-type="pmid">38594331</pub-id></element-citation></ref>
<ref id="b42-or-55-6-09112"><label>42</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Liu</surname><given-names>Z</given-names></name><name><surname>Ajit</surname><given-names>K</given-names></name><name><surname>Wu</surname><given-names>Y</given-names></name><name><surname>Zhu</surname><given-names>WG</given-names></name><name><surname>Gullerova</surname><given-names>M</given-names></name></person-group><article-title>The GATAD2B-NuRD complex drives DNA:RNA hybrid-dependent chromatin boundary formation upon DNA damage</article-title><source>EMBO J</source><volume>43</volume><fpage>2453</fpage><lpage>2485</lpage><year>2024</year><pub-id pub-id-type="doi">10.1038/s44318-024-00111-7</pub-id><pub-id pub-id-type="pmid">38719994</pub-id></element-citation></ref>
<ref id="b43-or-55-6-09112"><label>43</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Gong</surname><given-names>F</given-names></name><name><surname>Clouaire</surname><given-names>T</given-names></name><name><surname>Aguirrebengoa</surname><given-names>M</given-names></name><name><surname>Legube</surname><given-names>G</given-names></name><name><surname>Miller</surname><given-names>KM</given-names></name></person-group><article-title>Histone demethylase KDM5A regulates the ZMYND8-NuRD chromatin remodeler to promote DNA repair</article-title><source>J Cell Biol</source><volume>216</volume><fpage>1959</fpage><lpage>1974</lpage><year>2017</year><pub-id pub-id-type="doi">10.1083/jcb.201611135</pub-id><pub-id pub-id-type="pmid">28572115</pub-id></element-citation></ref>
<ref id="b44-or-55-6-09112"><label>44</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Wang</surname><given-names>HC</given-names></name><name><surname>Chou</surname><given-names>CL</given-names></name><name><surname>Yang</surname><given-names>CC</given-names></name><name><surname>Huang</surname><given-names>WL</given-names></name><name><surname>Hsu</surname><given-names>YC</given-names></name><name><surname>Luo</surname><given-names>CW</given-names></name><name><surname>Chen</surname><given-names>TJ</given-names></name><name><surname>Li</surname><given-names>CF</given-names></name><name><surname>Pan</surname><given-names>MR</given-names></name></person-group><article-title>Over-Expression of CHD4 is an independent biomarker of poor prognosis in patients with rectal cancers receiving concurrent chemoradiotherapy</article-title><source>Int J Mol Sci</source><volume>20</volume><fpage>4087</fpage><year>2019</year><pub-id pub-id-type="doi">10.3390/ijms20174087</pub-id><pub-id pub-id-type="pmid">31438571</pub-id></element-citation></ref>
<ref id="b45-or-55-6-09112"><label>45</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Chang</surname><given-names>CL</given-names></name><name><surname>Huang</surname><given-names>CR</given-names></name><name><surname>Chang</surname><given-names>SJ</given-names></name><name><surname>Wu</surname><given-names>CC</given-names></name><name><surname>Chen</surname><given-names>HH</given-names></name><name><surname>Luo</surname><given-names>CW</given-names></name><name><surname>Yip</surname><given-names>HK</given-names></name></person-group><article-title>CHD4 as an important mediator in regulating the malignant behaviors of colorectal cancer</article-title><source>Int J Biol Sci</source><volume>17</volume><fpage>1660</fpage><lpage>1670</lpage><year>2021</year><pub-id pub-id-type="doi">10.7150/ijbs.56976</pub-id><pub-id pub-id-type="pmid">33994851</pub-id></element-citation></ref>
<ref id="b46-or-55-6-09112"><label>46</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>McKenzie</surname><given-names>LD</given-names></name><name><surname>LeClair</surname><given-names>JW</given-names></name><name><surname>Miller</surname><given-names>KN</given-names></name><name><surname>Strong</surname><given-names>AD</given-names></name><name><surname>Chan</surname><given-names>HL</given-names></name><name><surname>Oates</surname><given-names>EL</given-names></name><name><surname>Ligon</surname><given-names>KL</given-names></name><name><surname>Brennan</surname><given-names>CW</given-names></name><name><surname>Chheda</surname><given-names>MG</given-names></name></person-group><article-title>CHD4 regulates the DNA damage response and RAD51 expression in glioblastoma</article-title><source>Sci Rep</source><volume>9</volume><fpage>4444</fpage><year>2019</year><pub-id pub-id-type="doi">10.1038/s41598-019-40327-w</pub-id><pub-id pub-id-type="pmid">30872624</pub-id></element-citation></ref>
<ref id="b47-or-55-6-09112"><label>47</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Wu</surname><given-names>J</given-names></name><name><surname>Zhou</surname><given-names>Z</given-names></name><name><surname>Li</surname><given-names>J</given-names></name><name><surname>Liu</surname><given-names>H</given-names></name><name><surname>Zhang</surname><given-names>H</given-names></name><name><surname>Zhang</surname><given-names>J</given-names></name><name><surname>Huang</surname><given-names>W</given-names></name><name><surname>He</surname><given-names>Y</given-names></name><name><surname>Zhu</surname><given-names>S</given-names></name><name><surname>Huo</surname><given-names>M</given-names></name><etal/></person-group><article-title>CHD4 promotes acquired chemoresistance and tumor progression by activating the MEK/ERK axis</article-title><source>Drug Resist Updat</source><volume>66</volume><fpage>100913</fpage><year>2023</year><pub-id pub-id-type="doi">10.1016/j.drup.2022.100913</pub-id><pub-id pub-id-type="pmid">36603431</pub-id></element-citation></ref>
<ref id="b48-or-55-6-09112"><label>48</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Oyama</surname><given-names>Y</given-names></name><name><surname>Shigeta</surname><given-names>S</given-names></name><name><surname>Tokunaga</surname><given-names>H</given-names></name><name><surname>Tsuji</surname><given-names>K</given-names></name><name><surname>Ishibashi</surname><given-names>M</given-names></name><name><surname>Shibuya</surname><given-names>Y</given-names></name><name><surname>Shimada</surname><given-names>M</given-names></name><name><surname>Yasuda</surname><given-names>J</given-names></name><name><surname>Yaegashi</surname><given-names>N</given-names></name></person-group><article-title>CHD4 regulates platinum sensitivity through MDR1 expression in ovarian cancer: A potential role of CHD4 inhibition as a combination therapy with platinum agents</article-title><source>PLoS One</source><volume>16</volume><fpage>e0251079</fpage><year>2021</year><pub-id pub-id-type="doi">10.1371/journal.pone.0251079</pub-id><pub-id pub-id-type="pmid">34161330</pub-id></element-citation></ref>
<ref id="b49-or-55-6-09112"><label>49</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Hou</surname><given-names>MF</given-names></name><name><surname>Luo</surname><given-names>CW</given-names></name><name><surname>Chang</surname><given-names>TM</given-names></name><name><surname>Hung</surname><given-names>WC</given-names></name><name><surname>Chen</surname><given-names>TY</given-names></name><name><surname>Tsai</surname><given-names>YL</given-names></name><name><surname>Chai</surname><given-names>CY</given-names></name><name><surname>Pan</surname><given-names>MR</given-names></name></person-group><article-title>The NuRD complex-mediated p21 suppression facilitates chemoresistance in BRCA-proficient breast cancer</article-title><source>Exp Cell Res</source><volume>359</volume><fpage>458</fpage><lpage>465</lpage><year>2017</year><pub-id pub-id-type="doi">10.1016/j.yexcr.2017.08.029</pub-id><pub-id pub-id-type="pmid">28842166</pub-id></element-citation></ref>
<ref id="b50-or-55-6-09112"><label>50</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Sun</surname><given-names>L</given-names></name><name><surname>Liu</surname><given-names>R</given-names></name><name><surname>Wu</surname><given-names>ZJ</given-names></name><name><surname>Liu</surname><given-names>ZY</given-names></name><name><surname>Wan</surname><given-names>AH</given-names></name><name><surname>Yan</surname><given-names>S</given-names></name><name><surname>Liu</surname><given-names>C</given-names></name><name><surname>Liang</surname><given-names>H</given-names></name><name><surname>Xiao</surname><given-names>M</given-names></name><name><surname>You</surname><given-names>N</given-names></name><etal/></person-group><article-title>Galectin-7 Induction by EHMT2 inhibition enhances immunity in microsatellite stability colorectal cancer</article-title><source>Gastroenterology</source><volume>166</volume><fpage>466</fpage><lpage>482</lpage><year>2024</year><pub-id pub-id-type="doi">10.1053/j.gastro.2023.11.294</pub-id><pub-id pub-id-type="pmid">38065340</pub-id></element-citation></ref>
<ref id="b51-or-55-6-09112"><label>51</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Fu</surname><given-names>G</given-names></name><name><surname>Tao</surname><given-names>Y</given-names></name><name><surname>Feng</surname><given-names>K</given-names></name><name><surname>Chen</surname><given-names>Y</given-names></name><name><surname>Zhang</surname><given-names>W</given-names></name><name><surname>Zhang</surname><given-names>Z</given-names></name><name><surname>Hu</surname><given-names>G</given-names></name><name><surname>Ou</surname><given-names>Y</given-names></name></person-group><article-title>CHD4 epigenetically coordinates genomic instability and immunosuppression to drive pan-cancer progression and confer HDAC inhibitor sensitivity</article-title><source>Clin Exp Med</source><volume>26</volume><fpage>150</fpage><year>2026</year><pub-id pub-id-type="doi">10.1007/s10238-026-02081-y</pub-id><pub-id pub-id-type="pmid">41680566</pub-id></element-citation></ref>
<ref id="b52-or-55-6-09112"><label>52</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Ray Chaudhuri</surname><given-names>A</given-names></name><name><surname>Callen</surname><given-names>E</given-names></name><name><surname>Ding</surname><given-names>X</given-names></name><name><surname>Gogola</surname><given-names>E</given-names></name><name><surname>Duarte</surname><given-names>AA</given-names></name><name><surname>Lee</surname><given-names>JE</given-names></name><name><surname>Wong</surname><given-names>N</given-names></name><name><surname>Lafarga</surname><given-names>V</given-names></name><name><surname>Calvo</surname><given-names>JA</given-names></name><name><surname>Panzarino</surname><given-names>NJ</given-names></name><etal/></person-group><article-title>Replication fork stability confers chemoresistance in BRCA-deficient cells</article-title><source>Nature</source><volume>535</volume><fpage>382</fpage><lpage>387</lpage><year>2016</year><pub-id pub-id-type="doi">10.1038/nature18325</pub-id><pub-id pub-id-type="pmid">27443740</pub-id></element-citation></ref>
<ref id="b53-or-55-6-09112"><label>53</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Mamontova</surname><given-names>V</given-names></name><name><surname>Trifault</surname><given-names>B</given-names></name><name><surname>Gribling-Burrer</surname><given-names>AS</given-names></name><name><surname>Bohn</surname><given-names>P</given-names></name><name><surname>Boten</surname><given-names>L</given-names></name><name><surname>Preckwinkel</surname><given-names>P</given-names></name><name><surname>Gallant</surname><given-names>P</given-names></name><name><surname>Solvie</surname><given-names>D</given-names></name><name><surname>Ade</surname><given-names>CP</given-names></name><name><surname>Papadopoulos</surname><given-names>D</given-names></name><etal/></person-group><article-title>NEAT1 promotes genome stability via m6A methylation-dependent regulation of CHD4</article-title><source>Genes Dev</source><volume>38</volume><fpage>915</fpage><lpage>930</lpage><year>2024</year><pub-id pub-id-type="doi">10.1101/gad.351913.124</pub-id><pub-id pub-id-type="pmid">39362776</pub-id></element-citation></ref>
<ref id="b54-or-55-6-09112"><label>54</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Ullah</surname><given-names>I</given-names></name><name><surname>Th&#x00F6;lken</surname><given-names>C</given-names></name><name><surname>Zhong</surname><given-names>Y</given-names></name><name><surname>John</surname><given-names>M</given-names></name><name><surname>Rossbach</surname><given-names>O</given-names></name><name><surname>Lenz</surname><given-names>J</given-names></name><name><surname>G&#x00F6;&#x00DF;ringer</surname><given-names>M</given-names></name><name><surname>Nist</surname><given-names>A</given-names></name><name><surname>Albert</surname><given-names>L</given-names></name><name><surname>Stiewe</surname><given-names>T</given-names></name><etal/></person-group><article-title>RNA inhibits dMi-2/CHD4 chromatin binding and nucleosome remodeling</article-title><source>Cell Rep</source><volume>39</volume><fpage>110895</fpage><year>2022</year><pub-id pub-id-type="doi">10.1016/j.celrep.2022.110895</pub-id><pub-id pub-id-type="pmid">35649367</pub-id></element-citation></ref>
<ref id="b55-or-55-6-09112"><label>55</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Hall</surname><given-names>SD</given-names></name><name><surname>Tran</surname><given-names>K</given-names></name><name><surname>Zhu</surname><given-names>J</given-names></name><name><surname>Su</surname><given-names>T</given-names></name><name><surname>McHugh</surname><given-names>CA</given-names></name></person-group><article-title>DUBR non-coding RNA regulates gene expression by affecting AP-1 enhancer accessibility</article-title><source>Funct Integr Genomics</source><volume>25</volume><fpage>68</fpage><year>2025</year><pub-id pub-id-type="doi">10.1007/s10142-025-01582-5</pub-id><pub-id pub-id-type="pmid">40117000</pub-id></element-citation></ref>
<ref id="b56-or-55-6-09112"><label>56</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Zhang</surname><given-names>Y</given-names></name><name><surname>Feng</surname><given-names>Z</given-names></name><name><surname>Xu</surname><given-names>Y</given-names></name><name><surname>Jiang</surname><given-names>S</given-names></name><name><surname>Zhang</surname><given-names>Q</given-names></name><name><surname>Zhang</surname><given-names>Z</given-names></name><name><surname>Wang</surname><given-names>K</given-names></name><name><surname>Li</surname><given-names>X</given-names></name><name><surname>Xu</surname><given-names>L</given-names></name><name><surname>Yuan</surname><given-names>M</given-names></name><etal/></person-group><article-title>Novel roles of LSECtin in gastric cancer cell adhesion, migration, invasion, and lymphatic metastasis</article-title><source>Cell Death Dis</source><volume>13</volume><fpage>593</fpage><year>2022</year><pub-id pub-id-type="doi">10.1038/s41419-022-05026-x</pub-id><pub-id pub-id-type="pmid">35821222</pub-id></element-citation></ref>
<ref id="b57-or-55-6-09112"><label>57</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Wang</surname><given-names>Y</given-names></name><name><surname>Huang</surname><given-names>X</given-names></name><name><surname>Wang</surname><given-names>P</given-names></name><name><surname>Zeng</surname><given-names>Y</given-names></name><name><surname>Zhou</surname><given-names>G</given-names></name></person-group><article-title>The hsa_circ_0007396-miR-767-3p-CHD4 axis is involved in the progression and carcinogenesis of gastric cancer</article-title><source>J Gastrointest Oncol</source><volume>13</volume><fpage>2885</fpage><lpage>2902</lpage><year>2022</year><pub-id pub-id-type="doi">10.21037/jgo-22-1218</pub-id><pub-id pub-id-type="pmid">36636050</pub-id></element-citation></ref>
<ref id="b58-or-55-6-09112"><label>58</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Li</surname><given-names>Q</given-names></name><name><surname>Wang</surname><given-names>K</given-names></name><name><surname>Shen</surname><given-names>Y</given-names></name><name><surname>Lin</surname><given-names>C</given-names></name><name><surname>Miao</surname><given-names>J</given-names></name><name><surname>Hu</surname><given-names>X</given-names></name></person-group><article-title>Bioinformatics based exploration of hsa-miR-194-5p regulation of CHD4 through PI3K/AKT signal pathway to enhance tumor resistance to apoptosis due to loss of nests and participate in poor prognosis of oral squamous cell carcinoma</article-title><source>Ann Transl Med</source><volume>11</volume><fpage>107</fpage><year>2023</year><pub-id pub-id-type="doi">10.21037/atm-22-6332</pub-id><pub-id pub-id-type="pmid">36819582</pub-id></element-citation></ref>
<ref id="b59-or-55-6-09112"><label>59</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Luo</surname><given-names>J</given-names></name><name><surname>Xu</surname><given-names>S</given-names></name><name><surname>Wang</surname><given-names>J</given-names></name><name><surname>He</surname><given-names>L</given-names></name><name><surname>Li</surname><given-names>Z</given-names></name></person-group><article-title>Circular RNA circWBSCR22 facilitates colorectal cancer metastasis by enhancing CHD4&#x2032;s protein stability</article-title><source>Int J Biol Macromol</source><volume>282</volume><fpage>137135</fpage><year>2024</year><pub-id pub-id-type="doi">10.1016/j.ijbiomac.2024.137135</pub-id><pub-id pub-id-type="pmid">39486700</pub-id></element-citation></ref>
<ref id="b60-or-55-6-09112"><label>60</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Sweat</surname><given-names>ME</given-names></name><name><surname>Shi</surname><given-names>W</given-names></name><name><surname>Sweat</surname><given-names>YY</given-names></name><name><surname>Li</surname><given-names>J</given-names></name><name><surname>Li</surname><given-names>J</given-names></name><name><surname>Keating</surname><given-names>EM</given-names></name><name><surname>Ponek</surname><given-names>A</given-names></name><name><surname>Ma</surname><given-names>Q</given-names></name><name><surname>Park</surname><given-names>C</given-names></name><name><surname>Trembley</surname><given-names>MA</given-names></name><etal/></person-group><article-title>TBX5 and CHD4 coordinately activate atrial cardiomyocyte genes to maintain cardiac rhythm homeostasis</article-title><source>Circulation</source><volume>152</volume><fpage>784</fpage><lpage>801</lpage><year>2025</year><pub-id pub-id-type="doi">10.1161/CIRCULATIONAHA.125.073833</pub-id><pub-id pub-id-type="pmid">40799140</pub-id></element-citation></ref>
<ref id="b61-or-55-6-09112"><label>61</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Shi</surname><given-names>W</given-names></name><name><surname>Wasson</surname><given-names>LK</given-names></name><name><surname>Dorr</surname><given-names>KM</given-names></name><name><surname>Robbe</surname><given-names>ZL</given-names></name><name><surname>Wilczewski</surname><given-names>CM</given-names></name><name><surname>Hepperla</surname><given-names>AJ</given-names></name><name><surname>Davis</surname><given-names>IJ</given-names></name><name><surname>Seidman</surname><given-names>CE</given-names></name><name><surname>Seidman</surname><given-names>JG</given-names></name><name><surname>Conlon</surname><given-names>FL</given-names></name></person-group><article-title>CHD4 and SMYD1 repress common transcriptional programs in the developing heart</article-title><source>Development</source><volume>151</volume><fpage>dev202505</fpage><year>2024</year><pub-id pub-id-type="doi">10.1242/dev.202505</pub-id><pub-id pub-id-type="pmid">38619323</pub-id></element-citation></ref>
<ref id="b62-or-55-6-09112"><label>62</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Robbe</surname><given-names>ZL</given-names></name><name><surname>Shi</surname><given-names>W</given-names></name><name><surname>Wasson</surname><given-names>LK</given-names></name><name><surname>Scialdone</surname><given-names>AP</given-names></name><name><surname>Wilczewski</surname><given-names>CM</given-names></name><name><surname>Sheng</surname><given-names>X</given-names></name><name><surname>Hepperla</surname><given-names>AJ</given-names></name><name><surname>Akerberg</surname><given-names>BN</given-names></name><name><surname>Pu</surname><given-names>WT</given-names></name><name><surname>Cristea</surname><given-names>IM</given-names></name><etal/></person-group><article-title>CHD4 is recruited by GATA4 and NKX2-5 to repress noncardiac gene programs in the developing heart</article-title><source>Genes Dev</source><volume>36</volume><fpage>468</fpage><lpage>482</lpage><year>2022</year><pub-id pub-id-type="doi">10.1101/gad.349154.121</pub-id><pub-id pub-id-type="pmid">35450884</pub-id></element-citation></ref>
<ref id="b63-or-55-6-09112"><label>63</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Moraes-Almeida</surname><given-names>MS</given-names></name><name><surname>Sogayar</surname><given-names>MC</given-names></name><name><surname>Demasi</surname><given-names>MAA</given-names></name></person-group><article-title>Evidence of a synthetic lethality interaction between SETDB1 histone methyltransferase and CHD4 chromatin remodeling protein in a triple negative breast cancer cell line</article-title><source>Braz J Med Biol Res</source><volume>56</volume><fpage>e12854</fpage><year>2023</year><pub-id pub-id-type="doi">10.1590/1414-431x2023e12854</pub-id><pub-id pub-id-type="pmid">37970920</pub-id></element-citation></ref>
<ref id="b64-or-55-6-09112"><label>64</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Fuchs</surname><given-names>HA</given-names></name><name><surname>Peng</surname><given-names>Y</given-names></name><name><surname>Ayyapan</surname><given-names>S</given-names></name><name><surname>Rosas</surname><given-names>R</given-names></name><name><surname>Zhang</surname><given-names>H</given-names></name><name><surname>Panchenko</surname><given-names>AR</given-names></name><name><surname>Musselman</surname><given-names>CA</given-names></name></person-group><article-title>G34R cancer mutation alters the conformational ensemble and dynamics of the histone H3.3 tails</article-title><source>Nucleic Acids Res</source><volume>54</volume><fpage>gkaf1381</fpage><year>2026</year><pub-id pub-id-type="doi">10.1093/nar/gkaf1381</pub-id><pub-id pub-id-type="pmid">41533587</pub-id></element-citation></ref>
<ref id="b65-or-55-6-09112"><label>65</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Qian</surname><given-names>W</given-names></name><name><surname>Jiang</surname><given-names>P</given-names></name><name><surname>Niu</surname><given-names>M</given-names></name><name><surname>Fu</surname><given-names>Y</given-names></name><name><surname>Huang</surname><given-names>D</given-names></name><name><surname>Zhang</surname><given-names>D</given-names></name><name><surname>Liang</surname><given-names>Y</given-names></name><name><surname>Wang</surname><given-names>Q</given-names></name><name><surname>Han</surname><given-names>Y</given-names></name><name><surname>Zeng</surname><given-names>X</given-names></name><etal/></person-group><article-title>Selective identification of epigenetic regulators at methylated genomic sites by SelectID</article-title><source>Nat Commun</source><volume>16</volume><fpage>3709</fpage><year>2025</year><pub-id pub-id-type="doi">10.1038/s41467-025-59002-y</pub-id><pub-id pub-id-type="pmid">40251151</pub-id></element-citation></ref>
<ref id="b66-or-55-6-09112"><label>66</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Kim</surname><given-names>MS</given-names></name><name><surname>Chung</surname><given-names>NG</given-names></name><name><surname>Kang</surname><given-names>MR</given-names></name><name><surname>Yoo</surname><given-names>NJ</given-names></name><name><surname>Lee</surname><given-names>SH</given-names></name></person-group><article-title>Genetic and expressional alterations of CHD genes in gastric and colorectal cancers</article-title><source>Histopathology</source><volume>58</volume><fpage>660</fpage><lpage>668</lpage><year>2011</year><pub-id pub-id-type="doi">10.1111/j.1365-2559.2011.03819.x</pub-id><pub-id pub-id-type="pmid">21447119</pub-id></element-citation></ref>
<ref id="b67-or-55-6-09112"><label>67</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Luo</surname><given-names>CW</given-names></name><name><surname>Wu</surname><given-names>CC</given-names></name><name><surname>Chang</surname><given-names>SJ</given-names></name><name><surname>Chang</surname><given-names>TM</given-names></name><name><surname>Chen</surname><given-names>TY</given-names></name><name><surname>Chai</surname><given-names>CY</given-names></name><name><surname>Chang</surname><given-names>CL</given-names></name><name><surname>Hou</surname><given-names>MF</given-names></name><name><surname>Pan</surname><given-names>MR</given-names></name></person-group><article-title>CHD4-mediated loss of E-cadherin determines metastatic ability in triple-negative breast cancer cells</article-title><source>Exp Cell Res</source><volume>363</volume><fpage>65</fpage><lpage>72</lpage><year>2018</year><pub-id pub-id-type="doi">10.1016/j.yexcr.2017.12.032</pub-id><pub-id pub-id-type="pmid">29305962</pub-id></element-citation></ref>
<ref id="b68-or-55-6-09112"><label>68</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Ou-Yang</surname><given-names>F</given-names></name><name><surname>Pan</surname><given-names>MR</given-names></name><name><surname>Chang</surname><given-names>SJ</given-names></name><name><surname>Wu</surname><given-names>CC</given-names></name><name><surname>Fang</surname><given-names>SY</given-names></name><name><surname>Li</surname><given-names>CL</given-names></name><name><surname>Hou</surname><given-names>MF</given-names></name><name><surname>Luo</surname><given-names>CW</given-names></name></person-group><article-title>Identification of CHD4-&#x03B2;1 integrin axis as a prognostic marker in triple-negative breast cancer using next-generation sequencing and bioinformatics</article-title><source>Life Sci</source><volume>238</volume><fpage>116963</fpage><year>2019</year><pub-id pub-id-type="doi">10.1016/j.lfs.2019.116963</pub-id><pub-id pub-id-type="pmid">31639396</pub-id></element-citation></ref>
<ref id="b69-or-55-6-09112"><label>69</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Pratheeshkumar</surname><given-names>P</given-names></name><name><surname>Siraj</surname><given-names>AK</given-names></name><name><surname>Divya</surname><given-names>SP</given-names></name><name><surname>Parvathareddy</surname><given-names>SK</given-names></name><name><surname>Alobaisi</surname><given-names>K</given-names></name><name><surname>Al-Sobhi</surname><given-names>SS</given-names></name><name><surname>Al-Dayel</surname><given-names>F</given-names></name><name><surname>Al-Kuraya</surname><given-names>KS</given-names></name></person-group><article-title>CHD4 predicts aggressiveness in PTC patients and promotes cancer stemness and EMT in PTC cells</article-title><source>Int J Mol Sci</source><volume>22</volume><fpage>504</fpage><year>2021</year><pub-id pub-id-type="doi">10.3390/ijms22020504</pub-id><pub-id pub-id-type="pmid">33419089</pub-id></element-citation></ref>
<ref id="b70-or-55-6-09112"><label>70</label><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Nio</surname><given-names>K</given-names></name><name><surname>Yamashita</surname><given-names>T</given-names></name><name><surname>Okada</surname><given-names>H</given-names></name><name><surname>Kondo</surname><given-names>M</given-names></name><name><surname>Hayashi</surname><given-names>T</given-names></name><name><surname>Hara</surname><given-names>Y</given-names></name><name><surname>Nomura</surname><given-names>Y</given-names></name><name><surname>Zeng</surname><given-names>SS</given-names></name><name><surname>Yoshida</surname><given-names>M</given-names></name><name><surname>Hayashi</surname><given-names>T</given-names></name><etal/></person-group><article-title>Defeating EpCAM(&#x002B;) liver cancer stem cells by targeting chromatin remodeling enzyme CHD4 in human hepatocellular carcinoma</article-title><source>J Hepatol</source><volume>63</volume><fpage>1164</fpage><lpage>1172</lpage><year>2015</year><pub-id pub-id-type="doi">10.1016/j.jhep.2015.06.009</pub-id><pub-id pub-id-type="pmid">26095183</pub-id></element-citation></ref>
</ref-list>
</back>
<floats-group>
<fig id="f1-or-55-6-09112" position="float">
<label>Figure 1.</label>
<caption><p>Modular organization of the NuRD Complex. CHD3 and CHD4 constitute the ATP-dependent chromatin-remodeling module, which interacts with GATAD2A/B and MBD2/3. The deacetylase module contains HDAC1/2, MTA1/2/3 and RBBP4/7. NuRD, nucleosome remodeling and deacetylase; CHD3, chromodomain helicase DNA-binding protein 3; CHD4, chromodomain helicase DNA-binding protein 4; GATAD2A, GATA zinc finger domain containing 2A; GATAD2B, GATA zinc finger domain containing 2B; MBD2, methyl-CpG-binding domain protein 2; MBD3, methyl-CpG-binding domain protein 3; HDAC1, histone deacetylase 1; HDAC2, histone deacetylase 2; MTA1/2/3, metastasis-associated proteins 1/2/3; RBBP4, retinoblastoma-binding protein 4; RBBP7, retinoblastoma-binding protein 7.</p></caption>
<alt-text>Modular organization of the NuRD Complex. CHD3 and CHD4 constitute the ATP-dependent chromatin-remodeling module, which interacts with GATAD2A/B and MBD2/3. The deacetylase module ...</alt-text>
<graphic xlink:href="or-55-06-09112-g00.tif"/>
</fig>
<fig id="f2-or-55-6-09112" position="float">
<label>Figure 2.</label>
<caption><p>CHD4&#x2032;s involvement in DDR. (A) After DNA damage occurs, PARP is activated and recruits the CHD4/p300 complex or the ZMYND8/NuRD complex, thereby promoting DNA repair. (B) ATM drives chromatin remodeling mediated by RNF8-CHD4 or SIRT6-CHD4. (C) CHD4 is involved in R-loop-mediated DNA repair. (D) After DNA repair is completed, CHD4/NuRD inhibits p53 activity via deacetylation, thereby terminating DDR signals. DSB, DNA double-strand break; PARP1, poly(ADP-ribose) polymerase 1; PAR, poly(ADP-ribose); P300, E1A binding protein p300; CHD4, chromodomain helicase DNA-binding protein 4; KDM5A, lysine-specific demethylase 5A; H3K4, histone H3 lysine 4; me3, trimethylation; NuRD, nucleosome remodeling and deacetylase complex; ZMYND8, zinc finger MYND-type containing 8; ATM, ataxia telangiectasia mutated; RNF8, RING finger protein 8; MDC1, mediator of DNA damage checkpoint 1; &#x03B3;H2AX, phosphorylated H2A histone family member X; Ub, ubiquitin; SIRT6, sirtuin 6; HP1, heterochromatin protein 1; Ac, acetylation; BRD3, bromodomain-containing protein 3; TIP60, Tat interacting protein, 60 kDa; R-loop, RNA-DNA hybrid structure; BRCA1, breast cancer type 1 susceptibility protein; GATAD2B, GATA zinc finger domain containing 2B; Chk2, checkpoint kinase 2; p53, tumor protein p53; p21, cyclin-dependent kinase inhibitor 1A.</p></caption>
<alt-text>CHD4&#x2032;s involvement in DDR. (A) After DNA damage occurs, PARP is activated and recruits the CHD4/p300 complex or the ZMYND8/NuRD complex, thereby promoting DNA repair. (B) AT...</alt-text>
<graphic xlink:href="or-55-06-09112-g01.tif"/>
</fig>
<fig id="f3-or-55-6-09112" position="float">
<label>Figure 3.</label>
<caption><p>Role of CHD4 in tumor therapy resistance. CHD4 mediates tumor therapy resistance via regulation of DNA repair, drug efflux, cell cycle progression, immune evasion and replication fork stability. CHD4, chromodomain helicase DNA-binding protein 4; RAD51, RAD51 recombinase; MEK, mitogen-activated protein kinase; ERK, extracellular signal-regulated kinase; MVP, major vault protein; HDAC, histone deacetylase; EHMT2, euchromatic histone lysine methyltransferase 2; MRE11, MRE11 homolog double-strand break repair nuclease; p21, cyclin-dependent kinase inhibitor 1A.</p></caption>
<alt-text>Role of CHD4 in tumor therapy resistance. CHD4 mediates tumor therapy resistance via regulation of DNA repair, drug efflux, cell cycle progression, immune evasion and replication...</alt-text>
<graphic xlink:href="or-55-06-09112-g02.tif"/>
</fig>
<fig id="f4-or-55-6-09112" position="float">
<label>Figure 4.</label>
<caption><p>Non-coding RNA regulation of CHD4. lncRNAs (such as <italic>Neat1</italic> and <italic>Dubr</italic>) can influence chromatin remodeling or DNA repair signals by regulating CHD4 localization or NuRD complex activity. Meanwhile, miRNAs and circRNAs mainly regulate CHD4 expression levels via competing endogenous RNA mechanisms, transcriptional regulation, or protein stability regulation. <italic>circFBXL4</italic>, circular RNA FBXL4; miRNA or miR, microRNA; hsa_circ_0007396, human circular RNA 0007396; <italic>circWBSCR22</italic>, circular RNA WBSCR22; UPF1, up-frameshift mutation 1 homolog; STAT1, signal transducer and activator of transcription 1; CHD4, chromodomain helicase DNA-binding protein 4; NuRD, nucleosome remodeling and deacetylase complex; <italic>Neat1</italic>, nuclear paraspeckle assembly transcript 1; <italic>Dubr</italic>, developmental pluripotency associated 2 upstream binding RNA; METTL3, methyltransferase-like 3; ATM, ataxia telangiectasia mutated; DSB, DNA double-strand break; m6A, N6-methyladenosine.</p></caption>
<alt-text>Non-coding RNA regulation of CHD4. lncRNAs (such as Neat1 and Dubr) can influence chromatin remodeling or DNA repair signals by regulating CHD4 localization or Nu...</alt-text>
<graphic xlink:href="or-55-06-09112-g03.tif"/>
</fig>
<table-wrap id="tI-or-55-6-09112" position="float">
<label>Table I.</label>
<caption><p>CHD4 abnormalities and mechanisms in different tumor types.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="bottom">First author/s, year</th>
<th align="center" valign="bottom">Tumor type</th>
<th align="center" valign="bottom">Expression/mutation status</th>
<th align="center" valign="bottom">Outcome</th>
<th align="center" valign="bottom">Main mechanism</th>
<th align="center" valign="bottom">(Refs.)</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">Wu <italic>et al</italic>, 2023</td>
<td align="left" valign="top">Gastric cancer</td>
<td align="left" valign="top">High expression</td>
<td align="left" valign="top">Oncogenic</td>
<td align="left" valign="top">Enhances the interaction between MEK1/2 and ERK1/2, leading to higher ERK phosphorylation levels and sustained pathway activation</td>
<td align="center" valign="top">(<xref rid="b47-or-55-6-09112" ref-type="bibr">47</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Shi <italic>et al</italic>, 2025</td>
<td/>
<td align="left" valign="top">High expression</td>
<td align="left" valign="top">Oncogenic</td>
<td align="left" valign="top">Binds MYH9 via the ATPase domain and promotes its nuclear export; cytoplasmic MYH9 then inhibits GSK3&#x03B2;, resulting in &#x03B2;-catenin stabilization</td>
<td align="center" valign="top">(<xref rid="b18-or-55-6-09112" ref-type="bibr">18</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Kim <italic>et al</italic>, 2011</td>
<td/>
<td align="left" valign="top">Gene mutation; loss of function</td>
<td align="left" valign="top">Oncogenic</td>
<td align="left" valign="top">Alters gene expression by affecting chromatin structure</td>
<td align="center" valign="top">(<xref rid="b66-or-55-6-09112" ref-type="bibr">66</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Li <italic>et al</italic>, 2018</td>
<td align="left" valign="top">Endometrial cancer</td>
<td align="left" valign="top">R975H and R1162W mutations</td>
<td align="left" valign="top">Oncogenic</td>
<td align="left" valign="top">Activates transforming growth factor beta signaling</td>
<td align="center" valign="top">(<xref rid="b29-or-55-6-09112" ref-type="bibr">29</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Zhang <italic>et al</italic>, 2022</td>
<td align="left" valign="top">Breast cancer</td>
<td align="left" valign="top">Not specified</td>
<td align="left" valign="top">Tumor suppressor</td>
<td align="left" valign="top">Is recruited to the SOX2 promoter region by TRPS1, repressing transcription</td>
<td align="center" valign="top">(<xref rid="b27-or-55-6-09112" ref-type="bibr">27</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Wang <italic>et al</italic>, 2020</td>
<td/>
<td align="left" valign="top">High expression</td>
<td align="left" valign="top">Oncogenic</td>
<td align="left" valign="top">Under hypoxic conditions, its interaction with HIF is enhanced, promoting the transcription of HIF target genes</td>
<td align="center" valign="top">(<xref rid="b22-or-55-6-09112" ref-type="bibr">22</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Sattout <italic>et al</italic>, 2024</td>
<td/>
<td align="left" valign="top">High expression</td>
<td align="left" valign="top">Oncogenic</td>
<td align="left" valign="top">Enhances ER&#x03B1; transcriptional activity</td>
<td align="center" valign="top">(<xref rid="b21-or-55-6-09112" ref-type="bibr">21</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Luo <italic>et al</italic>, 2018</td>
<td/>
<td align="left" valign="top">High expression</td>
<td align="left" valign="top">Oncogenic</td>
<td align="left" valign="top">Binds to the promoter region of the E-cadherin gene and represses its transcription</td>
<td align="center" valign="top">(<xref rid="b67-or-55-6-09112" ref-type="bibr">67</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Ou-Yang <italic>et al</italic>, 2019</td>
<td/>
<td align="left" valign="top">High expression</td>
<td align="left" valign="top">Oncogenic</td>
<td align="left" valign="top">Promotes the transcription of &#x03B2;1-integrin</td>
<td align="center" valign="top">(<xref rid="b68-or-55-6-09112" ref-type="bibr">68</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Xia <italic>et al</italic>, 2017</td>
<td align="left" valign="top">Colorectal cancer</td>
<td align="left" valign="top">High expression</td>
<td align="left" valign="top">Oncogenic</td>
<td align="left" valign="top">After its localization to oxidative-damage sites via OGG1, it recruits DNA methyltransferase and suppresses multiple tumor suppressor genes</td>
<td align="center" valign="top">(<xref rid="b24-or-55-6-09112" ref-type="bibr">24</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Kim <italic>et al</italic>, 2011</td>
<td/>
<td align="left" valign="top">Gene mutation; loss of function</td>
<td align="left" valign="top">Oncogenic</td>
<td align="left" valign="top">Alters gene expression by affecting chromatin structure</td>
<td align="center" valign="top">(<xref rid="b66-or-55-6-09112" ref-type="bibr">66</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Sun <italic>et al</italic>, 2024</td>
<td/>
<td align="left" valign="top">Not specified</td>
<td align="left" valign="top">Oncogenic</td>
<td align="left" valign="top">Recruits EHMT2 to form a co-transcriptional silencing complex, repressing GAL7 expression</td>
<td align="center" valign="top">(<xref rid="b50-or-55-6-09112" ref-type="bibr">50</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Pratheeshkumar <italic>et al</italic>, 2021</td>
<td align="left" valign="top">Thyroid cancer</td>
<td align="left" valign="top">High expression</td>
<td align="left" valign="top">Oncogenic</td>
<td align="left" valign="top">Regulates the expression of EMT-related genes</td>
<td align="center" valign="top">(<xref rid="b69-or-55-6-09112" ref-type="bibr">69</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Wang <italic>et al</italic>, 2023</td>
<td align="left" valign="top">Ovarian cancer</td>
<td align="left" valign="top">High expression</td>
<td align="left" valign="top">Oncogenic</td>
<td align="left" valign="top">Interacts with EZH2, promoting nuclear accumulation of &#x03B2;-catenin</td>
<td align="center" valign="top">(<xref rid="b19-or-55-6-09112" ref-type="bibr">19</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Nio <italic>et al</italic>, 2015</td>
<td align="left" valign="top">Liver cancer</td>
<td align="left" valign="top">High expression</td>
<td align="left" valign="top">Oncogenic</td>
<td align="left" valign="top">Regulates the epigenetic state of cells through the NuRD complex</td>
<td align="center" valign="top">(<xref rid="b70-or-55-6-09112" ref-type="bibr">70</xref>)</td>
</tr>
<tr>
<td align="left" valign="top">Xu <italic>et al</italic>, 2020</td>
<td align="left" valign="top">non-small cell lung cancer</td>
<td align="left" valign="top">High expression</td>
<td align="left" valign="top">Oncogenic</td>
<td align="left" valign="top">Interacts with PHF5A and activates the RhoA/ROCK pathway</td>
<td align="center" valign="top">(<xref rid="b20-or-55-6-09112" ref-type="bibr">20</xref>)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="tfn1-or-55-6-09112"><p>CHD4, chromodomain helicase DNA-binding protein 4; MEK, mitogen-activated protein kinase; ERK, extracellular signal-regulated kinase; MYH9, myosin heavy chain 9; GSK3&#x03B2;, glycogen synthase kinase-3 beta; &#x03B2;-catenin, beta-catenin; SOX2, sex-determining region Y-related high-mobility group box 2; TRPS1, transcriptional repressor GATA binding 1; HIF, hypoxia-inducible factor; ER&#x03B1;, estrogen receptor alpha; E-cadherin, epithelial cadherin; OGG1, 8-oxoguanine DNA glycosylase 1; EHMT2, euchromatic histone lysine methyltransferase 2; GAL7, galectin-7; EMT, epithelial-mesenchymal transition; EZH2, enhancer of zeste homolog 2; NuRD, nucleosome remodeling and deacetylase complex; PHF5A, PHD finger protein 5A; RhoA, Ras homolog gene family member A; ROCK, Rho-associated protein kinase.</p></fn>
</table-wrap-foot>
</table-wrap>
</floats-group>
</article>
