Open Access

Bioinformatics analysis of sex differences in arrhythmogenic right ventricular cardiomyopathy

  • Authors:
    • Lai‑Te Chen
    • Chen‑Yang Jiang
  • View Affiliations

  • Published online on: January 17, 2019     https://doi.org/10.3892/mmr.2019.9873
  • Pages: 2238-2244
  • Copyright : © Chen et al. This is an open access article distributed under the terms of Creative Commons Attribution License [CC BY 4.0].

Metrics: Total Views: 0 (Spandidos Publications: | PMC Statistics: )
Total PDF Downloads: 0 (Spandidos Publications: | PMC Statistics: )


Abstract

Arrhythmogenic right ventricular cardiomyopathy (ARVC) is an inherited disease that exhibits sex differences on clinical presentation. The present study aimed to investigate the sex differences associated with ARVC by conducting an integrated bioinformatics analysis. The GSE29819 gene expression dataset was downloaded from the Gene Expression Omnibus database. The online analytical tool GEO2R was then used to screen for differentially expressed genes (DEGs), which were subsequently processed using enrichment analysis and protein‑protein interaction (PPI) network construction. Functional annotation of the DEGs was determined using ClueGO. The PPI network was constructed with Search Tool for the Retrieval of Interacting Genes, and was visualized with Cytoscape to identify the modules and hub genes. Compared with the female group, a total of 1,188 DEGs, of which 915 were upregulated and 273 were downregulated, were identified in the male group. The enrichment analysis revealed that in KEGG pathways, the upregulated DEGs were substantially enriched in the ‘nicotine addiction’ pathways, whereas the downregulated DEGS were mainly enriched in the ‘ECM‑receptor interaction’ and ‘protein digestion and absorption’ pathways. The PPI network contained 899 nodes and 1,627 edges, among which four significant modules were identified. In addition, kininogen 1, lysophosphatidic acid receptor 5, formyl peptide receptor (FPR) 2, adenylate cyclase 2, γ‑aminobutyric acid type B receptor subunit 2, FPR1, hydroxycarboxylic acid receptor 1, prostaglandin E receptor 3, cannabinoid receptor 1 and proenkephalin were identified as the top 10 hub genes. The key genes and related pathways identified in this study provide genetic insight into the diversity in phenotypes between female and male patients with ARVC, and may facilitate therapeutic individualization.
View Figures
View References

Related Articles

Journal Cover

March-2019
Volume 19 Issue 3

Print ISSN: 1791-2997
Online ISSN:1791-3004

Sign up for eToc alerts

Recommend to Library

Copy and paste a formatted citation
x
Spandidos Publications style
Chen LT and Chen LT: Bioinformatics analysis of sex differences in arrhythmogenic right ventricular cardiomyopathy. Mol Med Rep 19: 2238-2244, 2019
APA
Chen, L., & Chen, L. (2019). Bioinformatics analysis of sex differences in arrhythmogenic right ventricular cardiomyopathy. Molecular Medicine Reports, 19, 2238-2244. https://doi.org/10.3892/mmr.2019.9873
MLA
Chen, L., Jiang, C."Bioinformatics analysis of sex differences in arrhythmogenic right ventricular cardiomyopathy". Molecular Medicine Reports 19.3 (2019): 2238-2244.
Chicago
Chen, L., Jiang, C."Bioinformatics analysis of sex differences in arrhythmogenic right ventricular cardiomyopathy". Molecular Medicine Reports 19, no. 3 (2019): 2238-2244. https://doi.org/10.3892/mmr.2019.9873