Meta‑analyses of seven GIGYF2 polymorphisms with Parkinson's disease

  • Authors:
    • Dongjun Dai
    • Yunliang Wang
    • Xingyu Zhou
    • Jianmin Tao
    • Danjie Jiang
    • Hanlin Zhou
    • Yi Jiang
    • Guanghui Pan
    • Ping Ru
    • Huihui Ji
    • Jinfeng Li
    • Yuzheng Zhang
    • Honglei Yin
    • Mingqing Xu
    • Shiwei Duan
  • View Affiliations

  • Published online on: July 31, 2014     https://doi.org/10.3892/br.2014.324
  • Pages: 886-892
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Abstract

Parkinson's disease (PD) is the second most common neurodegenerative disorder that affects ~2% of the global population aged ≥65 years. Grb10‑interacting GYF protein‑2 (GIGYF2) can influence the development of PD through the regulation of insulin‑like growth factor‑1. The aim of the present meta‑analysis study was to establish the contribution of GIGYF2 polymorphisms to PD. The study was conducted based on nine eligible studies consisting of 7,246 PD patients and 7,544 healthy controls. The results indicated that the GIGYF2 C.3630A>G polymorphism increased the risk of PD by 37% [P=0.008; odds ratio (OR), 1.37; 95% confidence interval (CI), 1.08‑1.73] and that the GIGYF2 C.167G>A polymorphism was significantly associated with PD (P=0.003; OR, 3.67; 95% CI, 1.56‑8.68). The meta‑analyses of the other five GIGYF2 polymorphisms (C.1378C>A, C.1554G>A, C.2940A>G, C.1370C>A and C.3651G>A) did not reveal any significant associations. The present meta‑analyses of the GIGYF2 genetic polymorphisms may provide a comprehensive overview of this PD candidate gene for future studies.

Introduction

Parkinson’s disease (PD; OMIM: 168600) is the second most common neurodegenerative disorder, affecting ~2% of the global population aged ≥65 years (1,2). The clinical features of PD consist of resting tremor, muscular rigidity, bradykinesia and postural instability (3). PD can lead to pain (4), depression (5,6), visual hallucinations (6), dementia (7) and other non-motor symptoms (811). PD can cause damage and can even cause the human body to collapse.

The pathogenesis of PD is known to be associated with environmental and genetic factors. The environmental hypothesis of PD was popular in the 20th century (3). A number of environmental factors were found to be significantly associated with PD, including oxidative stress (12), smoking (13) and environmental toxins (14). In addition, genetic factors play an essential role in this complex disease. Twin (15) and family (16) studies have shown a higher PD susceptibility in twins and the first-degree relatives, respectively. Genome-wide linkage analysis provided evidence that the gene-by-gene interactions are important in PD susceptibility (17). A number of genetic markers have been identified for the risk of PD (18) and were shown to be potential therapeutic targets to PD (19,20).

Grb10-interacting GYF protein-2 (GIGYF2) is located within the PARK11 locus, an established locus of PD (21). The Grb10 adapter protein interacts with GIGYF2, which regulates the insulin-like growth factor-1 (IGF-1), stimulating the growth of the insulin signal (22,23). The IGFs affect the development of the nervous system by preventing the apoptosis of neuronal and brain-derived cells (2426). A previous study found an association between serum IGF-1 and the progression of motor symptoms in the early stage of PD (27). In addition, IGF-1 was shown to correlate with the clinical variables and diagnosis of PD (2729). Therefore, GIGYF2 may be a candidate factor for the risk of PD through its interaction with IGF-1.

Previously, several studies have performed an association study between the GIGYF2 polymorphisms and PD (3043). Among them, four studies showed a positive association of the GIGYF2 polymorphisms with PD (3033), whereas the other 10 studies showed a negative association (3443). These inconsistent results indicated that the exact role that GIGYF2 played in the pathophysiology of PD remains to be elucidated. Meta-analysis is able to enhance the reliability of the conclusion from individual studies by combining the data from various studies. To determine the genetic effect of GIGYF2 on PD, a comprehensive meta-analysis was performed among various case-control association studies with available genotypic and allelic frequencies.

Materials and methods

Data collection

Studies were selected from PubMed using the following key words: ‘Parkinson GIGYF2 association’ and ‘Parkinson GIGYF2 polymorphism’. Eligible studies for the meta-analysis were required to meet the following criteria: i) An original case-control study with the assessment of the association between GIGYF2 and PD; ii) the study provides enough data for obtaining or calculating the odds ratios (ORs) and 95% confidence intervals (CIs) with the data of the study; iii) contains genotype distribution of each polymorphism that meet the Hardy-Weinberg equilibrium (HWE); and iv) the study is involved with polymorphisms reported by >3 independent studies. As shown in the previous studies (4447), the following information was extracted or calculated from each study: Genetic locus, first author’s name, year of publication, country, numbers of cases and controls, ethnicity, reported association results, power of each case-control study and the minor allele frequency (MAF) of controls.

Statistical analysis

HWE was tested by the Arlequin program (48). The power of each study was calculated by the Power and Sample Size Calculation program. Statistical heterogeneity across the studies included in the meta-analysis was assessed by Cochran’s Q statistic and I2 test (49) to determine the type of analysis. In the meta-analysis, the fixed-effect model was used for the studies with minimal to moderate heterogeneity (I2<50%) and the random-effect model was used for the studies with significant heterogeneity (I2≥50%). Funnel plots were also generated to observe the potential publication bias. The statistical analyses of meta-analyses were performed in Review Manager 5 (50).

Results

Associations between PD and GIGYF2 polymorphisms

As shown in Fig. 1, 20 studies regarding the association of GIGYF2 with PD were obtained from PubMed. There were no relevant studies found in the Chinese database WanFang, WeiPu and China National Knowledge Infrastructure. In total, four duplicates, two non-case-control and eight without genotyping information studies were removed and three studies were added that were obtained from the references. Therefore, there were nine studies selected regarding seven GIGYF2 polymorphisms, which were C.1378C>A, C.167G>A, C.1554G>A, C.2940A>G, C.1370C>A, C.3630A>G and C.3651G>A (Table I). In particular, there were six studies with 2,281 cases and 1,815 controls for C.1378C>A, five with 5,519 cases and 6,316 controls for C.167G>A, four with 1,611 cases and 1,460 controls for C.1554G>A, four with 1,611 cases and 1,460 controls for C.2940A>G, three with 3,876 cases and 4,688 controls for C.1370C>A, three with 1,311 cases and 1,260 controls for C.3630A>G and three studies with 1,311 cases and 1,260 controls for the C.3651G>A.

Table I

Characteristics of the case-control studies in the current meta-analyses.

Table I

Characteristics of the case-control studies in the current meta-analyses.

First authorYearCountryCases/controlsEthnicityResultsaPowerMAF(Refs.)
GIGYF2 C.1378C>A
 Lautier2008Italy249/227EuropeanNS0.0680.0198(40)
 Guo2009USA310/120EuropeanNS0.0530.0167(33)
 Cao2010China510/481AsianNS0.3130.1455(35)
 Guella2011Italy552/552EuropeanNS0.1140.0281(54)
 Wang2011China300/200AsianNS0.2070.1975(30)
 Meeus2011Belgium305/360EuropeanNS0.1120.0680(43)
GIGYF2 C.167G>A
 Lautier2008Italy249/227EuropeanNSNA0.0000(40)
 Zimprich2009Austria699/1051EuropeanNS0.0560.0005(38)
 Bonetti2009Italy2928/3410EuropeanNS0.0530.0001(41)
 Vilarino-Guell2009Norway & USA1338/1268EuropeanSNA0.0000(42)
 Meeus2011Belgium305/360EuropeanNS0.0590.0056(43)
GIGYF2 C.1554G>A
 Lautier2008Italy249/227EuropeanNS0.0830.0352(40)
 Cao2010China510/481AsiansS0.2540.1071(35)
 Wang2011China300/200AsianNS0.1970.1825(30)
 Guella2011Italy552/552EuropeanNS0.1470.0426(54)
GIGYF2 C.2940A>G
 Lautier2008Italy249/227EuropeanNS0.2640.3194(40)
 Cao2010China510/481AsianNS0.2980.1351(35)
 Wang2011China300/200AsianS0.2750.3550(30)
 Guella2011Italy552/552EuropeanNS0.5050.2870(54)
GIGYF2 C.1370C>A
 Lautier2008Italy249/227EuropeansNSNA0.0000(40)
 Zimprich2009Austria699/1051EuropeanNS0.0590.0014(38)
 Bonetti2009Italy2928/3410EuropeanNS0.0530.0006(41)
GIGYF2 C.3630A>G
 Lautier2008Italy249/227EuropeanNS0.0700.0220(40)
 Cao2010China510/481AsianS0.2970.1341(35)
 Guella2011Italy552/552EuropeanNS0.0560.0027(54)
GIGYF2 C.3651G>A
 Lautier2008Italy249/227EuropeanNS0.2230.2247(40)
 Cao2010China510/481AsianNS0.3350.1611(35)
 Guella2011Italy552/552EuropeanNS0.4630.2391(54)

a Association of GIGYF2 with Parkinson’s disease.

{ label (or @symbol) needed for fn[@id='tfn2-br-02-06-0886'] } MAF, minor allele frequency; GIGYF2, Grb10-interacting GYF protein-2; NS, no significant; NA, not applicable; S, significant.

A significant association was found between the C.3630A>G (P=0.008; OR, 1.37; 95% CI, 1.08–1.73; Table II; Fig. 2) and C.167G>A (P=0.003; OR, 3.67; 95% CI, 1.56–8.68; Table II; Fig. 2) polymorphisms and PD. There were no other positive results in the remaining allelic analysis (P>0.05; Table II; Fig. 2). Low heterogeneity was found for C.1378C>A (I2=0%), C.167G>A (I2=41%), C.3651G>A (I2=0%), C.1370C>A (I2=0%), C.3630A>G (I2=28%) and C.2940A>G (I2=40%). By contrast, a significant statistical heterogeneity was observed in the meta-analysis of C.1554G>A (I2=82%). There was no publication bias for all the meta-analyses (Fig. 3).

Table II

Meta-analyses of the GIGYF2 polymorphisms with Parkinson’s disease.

Table II

Meta-analyses of the GIGYF2 polymorphisms with Parkinson’s disease.

Genetic locusCases/controlsGenetic modelSOR (95% CI)P-valueI2, %Power
GIGYF2 C.1378C>A2281/1815Overall (C vs. A)61.14 (0.97–1.34)0.11000.634
GIGYF2 C.167C>A5519/6316Overall (G vs. A)53.67 (1.56–8.68)0.003a410.063
GIGYF2 C.1554G>A1611/1460Overall (G vs. A)40.94 (0.59–1.50)0.790820.526
GIGYF2 C.2940A>G1611/1460Overall (A vs. G)41.09 (0.97–1.22)0.150400.885
GIGYF2 C.1370C>A3876/4688Overall (C vs. A)31.34 (0.49–3.64)0.57000.065
GIGYF2 C.3630A>G1311/1260Overall (A vs. G)31.37 (1.08–1.73)0.008a280.347
GIGYF2 C.3651G>A1311/1260Overall (G vs. A)30.95 (0.82–1.08)0.42000.769

a P≤0.05.

{ label (or @symbol) needed for fn[@id='tfn4-br-02-06-0886'] } GIGYF2, Grb10-interacting GYF protein-2; S, amount of studies; OR, odds ratio; CI, confidence interval.

As shown in Tables I and II, the present meta-analyses showed a much stronger power than for each of the individual studies. There was sufficient power (Power>0.8) for the meta-analyses of C.2940A>G (Power=0.885) and C.3651G>A (Power=0.824). By contrast, relatively lower power values were found for the meta-analyses of C.1378C>A (Power=0.634), C.1554G>A (Power=0.547), C.3630A>G (Power=0.357), C.167G>A (Power=0.063) and C.1370C>A (Power=0.065).

Discussion

GIGYF2 is potentially involved in the pathogenesis of PD due to the effect of IGF-1 in the insulin signaling in the central nervous system (5153). In the present study, a meta-analyses was performed among 7,246 cases and 7,544 controls to evaluate the association between seven polymorphisms of GIGYF2 and PD.

An increased risk of PD by 37% was observed for C.3630A>G. GIGYF2 C.3630A>G is a key polymorphism in the previous PD studies (35,40,54). Since the power of C.3630A>G was moderate, further studies should be conducted to confirm this positive finding. The C.3630G allele frequency was 13.4% in the Asian population, which was much higher compared to the European population (Table I), although a low heterogeneity was found for this polymorphism. In addition, meta-analysis of C.167C>A from five studies (38,4043) was also shown to be significantly associated with the risk of PD. No significant association was found for the other five GIGYF2 polymorphisms, which were C.1378C>A, C.1554G>A, C.2940A>G, C.1370C>A and C.3651G>A. The power was strong in the association studies of C.2940A>G and C.3651G>A polymorphisms, but was relatively weak for the remaining three polymorphisms, which were C.1378C>A, C.1554G>A and C.1370C>A. A significant difference was found between ethnicities for the C.1378C>A polymorphism (Fst=0.192), although there was minimal heterogeneity according to the meta-analysis of this polymorphism.

Several limitations of the present meta-analysis should be taken with caution. Firstly, only nine studies were included in the meta-analysis. The power values of the meta-analyses were low due to the MAF of certain polymorphisms. Secondly, PD is a complex and growing disease with a different physiological status existing in the PD cases. As the pathogenesis of familial and sporadic PD are not identical (55), family history as an independent risk factor for PD (56) should be emphasized in PD association studies. There were at least 1,818 sporadic and 861 familial PD patients involved in the present meta-analysis. Notably, two studies did not provide the information (41,42). A previous study strongly supported that GIGYF2 was a causal factor of PD in the familial study (40). However, other studies showed a lack of association in sporadic PD studies (33,35,54). Subgroup analysis by the PD family history is required to establish the role of genetic factors in the pathogenesis of PD. Thirdly, only seven polymorphisms of GIGYF2 were investigated, which may not fully reflect the function of GIGYF2 in PD. There are 9571 variants in the GIGYF2 according to the NCBI dbSNP database (http://www.ncbi.nlm.nih.gov/snp/?term=GIGYF2). Certain other variants, including C.684T>A, C.1219A>G and C.3583C>T, have been reported to be significantly associated with PD (37). In the present meta-analysis, those variants were not included due to a lack of relative information.

In conclusion, the present study found that the GIGYF2 C.3630A>G and C.167G>A polymorphisms were associated with PD. Future investigations of other ethnic populations are required to establish the contribution of GIGYF2 to the risk of PD.

Acknowledgements

The present study was supported by the grants from the National Natural Science Foundation of China (grant nos. 31100919 and 81371469), Natural Science Foundation of Zhejiang Province (grant no. LR13H020003), K.C. Wong Magna Fund in Ningbo University and the Program for Professor of Special Appointment (Eastern Scholar) at Shanghai Institutions of Higher Learning (to Miss Mingqing Xu) and the Key Basic Research Foundation of Science and Technology Commission of Shanghai Municipality (grant no. 13JC1403700) (to Miss Mingqing Xu).

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Spandidos Publications style
Dai D, Wang Y, Zhou X, Tao J, Jiang D, Zhou H, Jiang Y, Pan G, Ru P, Ji H, Ji H, et al: Meta‑analyses of seven GIGYF2 polymorphisms with Parkinson's disease. Biomed Rep 2: 886-892, 2014
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Dai, D., Wang, Y., Zhou, X., Tao, J., Jiang, D., Zhou, H. ... Duan, S. (2014). Meta‑analyses of seven GIGYF2 polymorphisms with Parkinson's disease. Biomedical Reports, 2, 886-892. https://doi.org/10.3892/br.2014.324
MLA
Dai, D., Wang, Y., Zhou, X., Tao, J., Jiang, D., Zhou, H., Jiang, Y., Pan, G., Ru, P., Ji, H., Li, J., Zhang, Y., Yin, H., Xu, M., Duan, S."Meta‑analyses of seven GIGYF2 polymorphisms with Parkinson's disease". Biomedical Reports 2.6 (2014): 886-892.
Chicago
Dai, D., Wang, Y., Zhou, X., Tao, J., Jiang, D., Zhou, H., Jiang, Y., Pan, G., Ru, P., Ji, H., Li, J., Zhang, Y., Yin, H., Xu, M., Duan, S."Meta‑analyses of seven GIGYF2 polymorphisms with Parkinson's disease". Biomedical Reports 2, no. 6 (2014): 886-892. https://doi.org/10.3892/br.2014.324