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In cancer therapy, the efficacy of drugs in standard treatment widely varies among individuals. Poly ADP-ribose polymerase (PARP) inhibitors play an essential role in personalized medicine; however, their use in the treatment of breast cancer has been limited to carcinoma with BRCA deficiency, including germline variants (1–3). Approximately 6–7% of breast cancer patients harboring germline or somatic BRCA mutations may benefit from PARP inhibitors (3–5).
The tumor suppressor genes BRCA1 and BRCA2 are involved in the repair of DNA. BRCA deficiency is the main factor causing homologous recombination (HR) deficiency. Alleles may be inactivated by several mechanisms, such as germline or somatic variants and epigenetic down-regulation. PARP inhibitors exhibit anti-tumor activity against carcinomas with HR deficiency, including BRCA deficiency (6).
While PARP inhibitors have been widely used to treat cancer patients, the acquisition of resistance remains a challenge. HR recovery, such as BRCA reversions, called back mutations, has been examined (7,8), and the re-induction of HR deficiency may increase the success of a rechallenge with PARP inhibitors. Moreover, the induction of HR deficiency by some agents may be useful in the treatment of BRCA-proficient tumors with combination therapy using PARP inhibitors (9,10).
The use of PARP inhibitors in breast cancer is limited to patients with BRCA-deficient tumors, including BRCA germline mutations, which are established biomarkers of response to PARP inhibitors. Therefore, the present study was undertaken to identify drugs that sensitize BRCA-proficient breast tumors to PARP inhibitors.
Olaparib, talazoparib, defactinib, and GSK2256098 were purchased from Selleck Chemicals. These agents were dissolved in dimethyl sulfoxide (DMSO) and stored at −20°C.
The human breast cancer cell lines MCF-7 and MDA-MB-231 were obtained as cell lines of NCI-60 from the NCI Developmental Therapeutics Program, and MDA-MB-436 was purchased from the American Type Culture Collection. MCF-7 and MDA-MB-436 cells were cultured in DMEM medium supplemented with 10% fetal bovine serum (FBS), 4 mM glutamine, 50 units/ml penicillin, and 100 µg/ml streptomycin, while MDA-MB-231 cells were cultured in RPMI 1640 medium with 10% FBS, 2 mM glutamine, 50 units/ml penicillin, and 100 µg/ml streptomycin. All cell cultures were incubated at 37°C in 5% CO2.
Cell viability was evaluated using Cell Counting Kit-8 (CCK-8) (Dojindo) as previously reported (11). The CCK-8 solution was added to the medium of some reagent-treated breast cancer cells. The absorbance (450 nm) of the medium was determined using SpectraMax iD3 (Molecular Devices) after 4 h of incubation. The percentage of cell viability was measured relative to DMSO-treated cells. Viable cell numbers were determined using a trypan blue dye exclusion assay. Cells were seeded in triplicate wells and allowed to attach overnight. The following day, cells were treated with the indicated single agents or drug combination. Viable cell numbers were measured at the indicated time points using an EVE automated cell counter (NanoEnTek).
Cells were washed with phosphate-buffered saline (PBS) and suspended in PBS containing 0.1% Triton X-100, 150 µg/ml RNase A and 50 µg/ml propidium iodide to stain the nuclei. The DNA content in stained nuclei was analyzed by FACSCalibur (BD Biosciences), as previously reported (11,12), or the BD Accuri C6 Plus flow cytometer (BD Biosciences).
Apoptosis was detected using the Annexin V-FITC Apoptosis Detection Kit (Nacalai Tesque) according to the manufacturer's instructions. After cells were cultured with agents for 72 h, they were collected, washed with phosphate-buffered saline, and suspended in a binding buffer. Cells were then stained with annexin V-FITC and propidium iodide. After a 15-min incubation, stained cells were examined using the BD Accuri C6 Plus flow cytometer. Data were analyzed using FlowJo software (BD Biosciences).
Total cellular RNA was extracted from cells using Sepasol-RNA I Super G (Nacalai Tesque), and complementary DNA (cDNA) was synthesized from total RNA with High-Capacity cDNA Reverse Transcription kit (Applied Biosystems) as previously reported (12). A quantitative RT-PCR analysis was conducted using QuantStudio3 (Applied Biosystems) with cDNA and TaqMan probes (Thermo Fisher Scientific) to BRCA1 (Hs01556193_m1), BRCA2 (Hs00609073_m1), and GAPDH (Hs02758991_g1).
Cells were lysed with RIPA buffer (150 mM NaCl, 50 mM Tris-HCl pH 8.0, 1% NP-40, 0.5% sodium deoxycholate, and 0.1% SDS) supplemented with a 1% protease inhibitor cocktail mix and 1% phosphatase inhibitor cocktail mix (Nacalai Tesque). Lysates were mixed with 5×sample buffer (125 mM Tris-HCl, pH 6.8, 20% glycerol, 10% 2-mercaptoethanol, 4% SDS, and 0.04% bromophenol blue) and boiled at 95°C for 5 min. An equal amount of the protein extract was separated by SDS-PAGE and transferred to polyvinylidene difluoride membranes. Membranes were blocked with 5% fat-free dry milk in TBS with 0.1% Tween-20 and then incubated with the indicated primary and secondary antibodies in Signal Enhancer HIKARI (Nacalai Tesque). Proteins were visualized by the Immobilon Western Chemiluminescent HRP Substrate (Millipore) or Chemi-Lumi One L (Nacalai Tesque). Chemiluminescence was detected using the ChemiDoc Touch imaging system (Bio-Rad Laboratories) as previously reported (13). All immunoblot experiments were independently conducted at least three times. The amount of protein bands was quantified with the Image Lab Software (Bio-Rad Laboratories). The following rabbit monoclonal antibodies were obtained from Cell Signaling Technology (CST): PARP (#9542), Bcl-2 (#3498), Bcl-xL (#2769), Bim (#2933), p-Histone H3 Ser10 (#9701), Histone H3 (#4499), p21 (#2947), p-CDK1 Thr15 (#9111), p-ERK (#9101), total ERK (#9102), p-AKT (#4060), and total AKT (#4691). The rabbit monoclonal antibody against survivin was purchased from R&D Systems (#AF886). Mouse monoclonal antibodies against the following proteins were used: BAX (#610982, BD Biosciences), XIAP (#MAB822, R&D Systems), CDK1 (#9116, CST), Cyclin B (#4135, CST) and β-actin (#A5441, Sigma-Aldrich).
We screened more than 950 drugs, including those contained in the FDA-approved drug kit purchased from Selleck Chemicals. We checked the package insert for the drugs included and avoided those that are harmful for humans before the start of screening. We screened drugs at a concentration of 10 µM to inhibit the viability of BRCA-proficient MDA-MB-231 cells using the CCK-8 assay. We then identified agents that down-regulated BRCA1 and BRCA2 expression at the mRNA level using quantitative RT-PCR.
Combination index values were analyzed using CalcuSyn software (Biosoft) as previously reported (12). Synergism is defined as more than the expected additive effect with a combination index <1.0.
In vitro data are represented as the mean ± standard deviation (SD) in triplicate or quadruplicate. Samples were considered to be significantly different at P<0.05. All statistical analyses were performed using one-way ANOVA followed by Bonferroni or Dunnett's multiple comparison test.
We examined the effects of the PARP inhibitor olaparib in various breast cancer cell lines. We used human BRCA-proficient MDA-MB-231 and MCF-7 cells and BRCA-deficient MDA-MB-436 cells. As shown in Fig. 1A, olaparib exerted inhibitory effects on the proliferation of breast cancer cells in a manner that was dependent on BRCA deficiency. The results presented in Fig. 1A suggest that additional agents enhancing olaparib sensitivity for BRCA-proficient breast cancer are needed. We then examined the inhibitory effects of olaparib on the cell cycle in BRCA-proficient MDA-MB-231 and MCF-7 cells. The results obtained showed that olaparib induced apparent G2/M-phase arrest in both cell lines (Fig. 1B). Moreover, olaparib increased the percentage of sub-G1 cells, as shown in Fig. 1C, which implies the induction of apoptosis.
To identify a novel strategy for BRCA-proficient breast cancer, we searched candidate drugs for combination therapy with olaparib by the screening for BRCA down-regulators. After our investigation, we found that cell proliferation was more strongly inhibited by the combination of olaparib and the FAK inhibitor defactinib than by either agent alone in MDA-MB-231 and MCF-7 cells, and the combined effects observed in these cells were synergistic, as indicated by the combination index (CI) (Fig. 2A and B). Several molecular-targeting agents were previously shown to effectively enhance HR deficiency, and inhibited the cell growth when administered in combination with PARP inhibitors (9,10). Defactinib dose-dependently inhibited the proliferation of MDA-MB-231 and MCF-7 cells (Fig. 2C), and also down-regulated BRCA1 and BRCA2 mRNA expression in these cells (Fig. 2D).
Since defactinib enhanced the inhibitory effects of olaparib in BRCA-proficient breast cancer cells, we investigated the mechanisms of action of this combination. The results of a FACS analysis showed that the percentage of MDA-MB-231 cells treated with combination treatment did not increase in the G2/M phase over time compared with each agent alone, whereas the percentage of sub-G1 cells was significantly increased (Figs. 3A and S1A). On the other hand, the percentage of MCF-7 cells in the G2/M phase as well as that in the sub-G1 phase increased significantly higher with the combination than with either agent alone (Figs. 3B and S1B). We then performed a detailed apoptosis analysis of both cell lines. The induction of apoptosis in MDA-MB-231 cells by the combination was significantly stronger than that by either agent alone, while that induced in MCF-7 cells by the combination was significantly stronger than that by defactinib alone, but only slightly stronger than that by olaparib alone (Fig. 3C). Our results showed only modest differences in apoptotic induction in MDA-MB-231 and MCF-7 cells. To verify whether the differences in phenotypes between the cell lines might be due to the differences in the signaling pathways involved, we confirmed the different dependences on RAS/RAF/ERK (MAPK) or PI3K/AKT pathway (Fig. S2).
To clarify the molecular mechanisms underlying the enhanced induction of apoptosis by the combination treatment, we examined the expression of various apoptosis-related proteins in MDA-MB-231 cells with clear increase in apoptosis, which representative data shown in Fig. 4 and densitometry bar graphs and statistical comparisons in Supplementary Fig. 3. We investigated the cleavage of PARP with enhanced apoptosis, which increased in the combination treatment (Figs. 4A and S3). Based on previous findings on the effects of olaparib (14), we investigated the expression of Bcl-2 family proteins; however, they did not contribute fully to the enhanced induction of apoptosis by the combination treatment (Fig. 4B and C). The expression of XIAP and survivin, as major anti-apoptotic proteins, was also assessed (Fig. 4D and A). The results obtained showed that reduction in the expression of XIAP was significantly greater with the combination than with olaparib alone (Figs. 4D and S3). We next also evaluated the expression of cell cycle regulatory proteins using MCF-7 cells, which representative data shown in Fig. 4E and densitometry bar graphs and statistical comparisons in Fig. S4. The apparent accumulation of only MCF-7 cells treated with the combination in the G2/M phase was observed by FACS analysis (Figs. S1B and 3B), while the reduction in histone H3 Ser10 phosphorylation indicated impaired mitotic entry; however, the absence of CDK1 Tyr15 phosphorylation, p21 induction, and Cyclin B accumulation suggests that canonical G2 checkpoint response was not robustly activated.
To provide a scientific explanation for combining PARP and FAK inhibitors, we expanded the analysis shown in Fig. 5. We used MDA-MB-231 and MCF-7 cells and included talazoparib and GSK2256098 known as a potent FAK inhibitor. We investigated the combination effect of talazoparib and defactinib, and this combination treatment also showed the synergistic effects in both cells. However, the efficacy of PARP inhibitors and GSK2256098 was shown in only MDA-MB-231 cells. We also investigated the inhibition of cell proliferation, and BRCA1 and BRCA2 mRNA expression in these cells treated with GSK2256098 (Fig. S5).
Focal adhesion kinase (FAK) is a cytoplasmic non-receptor tyrosine kinase that regulates cell proliferation, migration, and survival through transmembrane receptors, such as integrins, growth factors, and cytokine receptors (15–18). The aberrant activation or overexpression of FAK has been reported in multiple cancer types, including breast cancer, supporting its potential as a therapeutic target (19–21). Defactinib, an oral and selective FAK inhibitor, is currently one of the most clinically advanced agents. It has recently gained regulatory approval in combination therapy with the novel RAF/MEK inhibitor avutometinib also known as CKI27, CH5126766, RO5126766, or VS-6766 derived from our established cell-based assay (22,23) for recurrent low-grade serous ovarian cancer with KRAS mutations (24,25), and has also been investigated in other types of cancers, such as non-small cell lung cancer and melanoma (26–28). Based on the development of defactinib, FAK inhibitors are expected to have translational relevance when used in combination strategies. Considering our findings that the combination treatment of olaparib or talazoparib and defactinib exerted synergistic effects (Figs. 2A and 5A), defactinib is expected to enhance PARP inhibitors-induced suppression of BRCA-proficient breast cancer cell proliferation.
The concentrations of olaparib (10–20 µM) used in our vitro experiments exceed the clinically achievable plasma exposure rage reported for the approved dose of 300 mg twice daily (600 mg/day). However, these concentrations are consistent with those used in previous preclinical studies and were selected to define the maximal pharmacologic and mechanistic effects of olaparib in vitro (10). In contrast, the concentrations of talazoparib (5–10 nM) used in this study are within the clinically achievable plasma range associated with the approved dose of 1mg once daily. Defactinib has demonstrated relevant activity in the low µM range, consistent with the reported IC50 values in NSCLC cell lines (27) and our findings in breast cancer cells. Importantly, the efficacy of combination was observed in our study at low µM concentrations of defactinib. Furthermore, the translational relevance of this therapeutic strategy is supported by the success of recent clinical approval of a combination therapy containing defactinib (24,25). Nevertheless, further studies using clinically relevant exposures and in vivo models are needed to confirm the translational relevance of our findings.
In the present study, we demonstrated that the pharmacological inhibition of FAK suppressed BRCA1 and BRCA2 expression at the mRNA level (Figs. 2D and S5B), suggesting a transcriptional mechanism contributing to HR impairment. Although the direct molecular link between BRCA transcription and FAK signaling remains to be fully elucidated, the present results are consistent with previous findings indicating that FAK plays a role in the regulation of the DNA damage response and also that its inhibition compromises the capacity for DNA repair and increases sensitivity to genotoxic stress (29). In addition, FAK has been reported to regulate downstream signaling pathways, such as the RAS or PI3K/AKT pathway, which have been implicated in the maintenance of BRCA expression and HR proficiency (9,19). Collectively, these studies support a model in which FAK inhibition disrupts DNA damage response signaling and may lead to the transcriptional down-regulation of BRCA expression, thereby contributing to a BRCAness-like state and providing a potential mechanistic rationale for enhanced sensitization to PARP inhibitors.
Olaparib has been shown to inhibit cancer growth through apoptosis in various types of cancer (10,14,30,31). Therefore, we hypothesized that the addition of defactinib may enhance this effect by the further induction of apoptosis. However, the present results showed only modest differences in apoptotic induction in MDA-MB-231 and MCF-7 cells (Fig. 3C). Targeting MAPK (RAS/RAF/ERK) or PI3K/AKT signaling pathway has known to induce apoptosis (32,33) and can be therapeutic focus in a large fraction of breast cancer (19,34–36). Given the previously reported interactions between FAK and these signaling (19,37), differences in cascade dependency shown in Fig. S2 may underlie the distinct apoptotic response to the combination treatment.
Olaparib was the only PARP inhibitor available in our clinical setting at the initiation of this study and its indication for breast cancer was limited to patients with BRCA germline mutations. More recently, the use of olaparib has expanded to breast cancer with somatic BRCA mutations and talazoparib has also been approved for breast cancer with germline BRCA mutations in our country (2). Somatic BRCA-mutated breast cancer has been shown to respond to PARP inhibitors as well as germline BRCA-mutated cases; however, somatic BRCA mutations are rare in breast cancer, thereby limiting the number of patients eligible for PARP inhibitors (3–5). Given that PARP inhibitors exhibit anti-tumor activity against carcinomas with HR deficiency beyond BRCA mutations (6), it is important to expand their use in the treatment of breast cancer. We also believe that proposing a new treatment strategy using PARP inhibitors for BRCA-proficient breast cancer would be useful.
PARP inhibitors are widely used in the treatment of ovarian cancer with HR deficiency or platinum sensitivity (38–42). However, resistance to PARP inhibitors is a major clinical challenge in long-time use. Several mechanisms of resistance have been shown, including the restoration of HR through BRCA reversion mutations and changes in DNA damage response signaling (7,8); however, studies addressing PARP inhibitor resistance in breast cancer remain limited. The present results may be noteworthy because we suggest that defactinib not only enhances the initial sensitivity to PARP inhibitors, but also has the potential to re-induce the effectiveness of olaparib in resistant tumors or delay resistance. Moreover, combination strategies involving PARP inhibitors in ovarian cancer have already exhibited clinical benefits, and combination therapy using olaparib and the VEGF inhibitor bevacizumab has been administered as a first-line treatment (39). Ongoing clinical trials on combination therapies using olaparib have been examined with molecular-targeting agents (43,44). The present results extend this concept by proposing FAK inhibition as a novel approach for combination therapy, which may be applicable not only to BRCA-proficient breast cancer, but also to PARP inhibitor-resistant ovarian cancer.
There are a number of limitations that need to be addressed. The present results are based primarily on in vitro models. Furthermore, although we demonstrated the transcriptional down-regulation of BRCA expression, the precise molecular mechanisms linking FAK inhibition and HR deficiency require further investigation. In addition, this study did not directly evaluate the acquired reverse mutation by the treatment with PARP inhibitors; therefore, the ability of defactinib to recover established resistance needs to be confirmed in further studies.
In conclusion, this is the first study to demonstrate that combination treatment of PARP inhibitors and the FAK inhibitor defactinib exerted synergistic effects in inhibiting the proliferation of BRCA-proficient breast cancer cells. The consistent synergy observed with olaparib and talazoparib highlights the potential of this strategy. These results provide a rationale for further clinical investigations of this combination to expand the therapeutic scope and overcome resistance to PARP inhibitors.
We thank Ms. Emi Nishimoto (Department of Drug Discovery Medicine, Kyoto Prefectural University of Medicine, Kyoto, Japan) for assistance with the additional experiments conducted during manuscript revision.
This study was supported by JSPS KAKENHI (grant no. 20K18906).
The data generated in the present study may be requested from the corresponding author.
HO and TS conceptualized the study. HO and MH designed the study. HO and TS acquired funding for the study. HO, KT, SY, MS, TM, YN and MH acquired and analyzed the data. HO, MH and TS confirmed the authenticity of all the raw data. HO wrote the original draft and HO, KT, SY, YN, MH and TS edited the manuscript. TS supervised the research. All authors read and approved the final version of the manuscript.
Not applicable.
Not applicable.
The authors declare that they have no competing interests.
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FAK |
focal adhesion kinase |
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HR |
homologous recombination |
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PARP |
poly ADP-ribose polymerase |
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