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Computational and in vitro analyses of the antibacterial effect of the ethanolic extract of Pluchea indica L. leaves

  • Authors:
    • Dwi Kusuma Wahyuni
    • Junairiah Junairiah
    • Chery Rosyanti
    • Viol Dhea Kharisma
    • Alvi Jauharotus Syukriya
    • Cici Tya Rahmawati
    • Purkan Purkan
    • Sreeramanan Subramaniam
    • Sehanat Prasongsuk
    • Hery Purnobasuki
  • View Affiliations / Copyright

    Affiliations: Department of Biology, Faculty of Science and Technology, Universitas Airlangga, Surabaya, East Java 60115, Indonesia, Department of Chemistry, Faculty of Science and Technology, Universitas Airlangga, Surabaya, East Java 60115, Indonesia, Plant Biomass Utilization Research Unit, Department of Botany, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand
    Copyright: © Wahyuni et al. This is an open access article distributed under the terms of Creative Commons Attribution License.
  • Article Number: 137
    |
    Published online on: July 29, 2024
       https://doi.org/10.3892/br.2024.1825
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Abstract

The most common gram-negative, Escherichia coli, and gram-positive bacteria, Bacillus spp., have evolved different mechanisms that have caused the emergence of multi-drug resistance. As a result, drugs that block the bacterial growth cycle are needed. Here, in silico and in vitro studies were performed to assess compounds in the Pluchea indica leaf extract, a medicinal plant, that can inhibit bacterial proteins. Briefly, P. indica leaves were extracted using ethanol. The crude extract was then subjected to gas chromatography-mass spectrometry for metabolite screening. Molecular docking simulations with rhomboid protease (Rpro) (Protein data bank ID number: 3ZMI from E. coli and filamenting temperature-sensitive mutant Z (FtsZ) protein data bank ID number: 2VAM from Bacillus subtilis were performed. Moreover, the well diffusion method was used to confirm the antibacterial activity of P. indica leaf extract. A total of 10 compounds were identified in the P. indica extract and used for computational analysis. Based on drug-likeness prediction, P. indica compounds may be drug-like molecules. Binding affinity tests indicated that 10,10-Dimethyl-2,6-dimethylenebicyclo(7.2.0)undecan-5.β.-ol and 11,11-Dimethyl-4,8-dimethylenebicyclo(7.2.0)undecan-3-ol had the most negative values. Accordingly, these compounds may be potential ligands that bind to bacterial proteins. The root mean square fluctuation values was <2 Å, indicating stable fluctuation binding for the ligand-protein complex. According to in vitro antibacterial assays, a high concentration (50%) of the P. indica extract markedly inhibited E. coli and B. subtilis, with inhibitory zone diameters of 31.86±1.63 and 21.09±0.09 mm, respectively. Overall, the compounds in the P. indica leaf extract were identified as functional inhibitors of E. coli and B. subtilis proteins via in silico analysis. This may facilitate development of antibacterial agents.
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Copy and paste a formatted citation
Spandidos Publications style
Wahyuni DK, Junairiah J, Rosyanti C, Kharisma VD, Syukriya AJ, Rahmawati CT, Purkan P, Subramaniam S, Prasongsuk S, Purnobasuki H, Purnobasuki H, et al: Computational and <em>in vitro</em> analyses of the antibacterial effect of the ethanolic extract of <em>Pluchea indica</em> L. leaves. Biomed Rep 21: 137, 2024.
APA
Wahyuni, D.K., Junairiah, J., Rosyanti, C., Kharisma, V.D., Syukriya, A.J., Rahmawati, C.T. ... Purnobasuki, H. (2024). Computational and <em>in vitro</em> analyses of the antibacterial effect of the ethanolic extract of <em>Pluchea indica</em> L. leaves. Biomedical Reports, 21, 137. https://doi.org/10.3892/br.2024.1825
MLA
Wahyuni, D. K., Junairiah, J., Rosyanti, C., Kharisma, V. D., Syukriya, A. J., Rahmawati, C. T., Purkan, P., Subramaniam, S., Prasongsuk, S., Purnobasuki, H."Computational and <em>in vitro</em> analyses of the antibacterial effect of the ethanolic extract of <em>Pluchea indica</em> L. leaves". Biomedical Reports 21.4 (2024): 137.
Chicago
Wahyuni, D. K., Junairiah, J., Rosyanti, C., Kharisma, V. D., Syukriya, A. J., Rahmawati, C. T., Purkan, P., Subramaniam, S., Prasongsuk, S., Purnobasuki, H."Computational and <em>in vitro</em> analyses of the antibacterial effect of the ethanolic extract of <em>Pluchea indica</em> L. leaves". Biomedical Reports 21, no. 4 (2024): 137. https://doi.org/10.3892/br.2024.1825
Copy and paste a formatted citation
x
Spandidos Publications style
Wahyuni DK, Junairiah J, Rosyanti C, Kharisma VD, Syukriya AJ, Rahmawati CT, Purkan P, Subramaniam S, Prasongsuk S, Purnobasuki H, Purnobasuki H, et al: Computational and <em>in vitro</em> analyses of the antibacterial effect of the ethanolic extract of <em>Pluchea indica</em> L. leaves. Biomed Rep 21: 137, 2024.
APA
Wahyuni, D.K., Junairiah, J., Rosyanti, C., Kharisma, V.D., Syukriya, A.J., Rahmawati, C.T. ... Purnobasuki, H. (2024). Computational and <em>in vitro</em> analyses of the antibacterial effect of the ethanolic extract of <em>Pluchea indica</em> L. leaves. Biomedical Reports, 21, 137. https://doi.org/10.3892/br.2024.1825
MLA
Wahyuni, D. K., Junairiah, J., Rosyanti, C., Kharisma, V. D., Syukriya, A. J., Rahmawati, C. T., Purkan, P., Subramaniam, S., Prasongsuk, S., Purnobasuki, H."Computational and <em>in vitro</em> analyses of the antibacterial effect of the ethanolic extract of <em>Pluchea indica</em> L. leaves". Biomedical Reports 21.4 (2024): 137.
Chicago
Wahyuni, D. K., Junairiah, J., Rosyanti, C., Kharisma, V. D., Syukriya, A. J., Rahmawati, C. T., Purkan, P., Subramaniam, S., Prasongsuk, S., Purnobasuki, H."Computational and <em>in vitro</em> analyses of the antibacterial effect of the ethanolic extract of <em>Pluchea indica</em> L. leaves". Biomedical Reports 21, no. 4 (2024): 137. https://doi.org/10.3892/br.2024.1825
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