A novel GATA4 loss-of-function mutation responsible for familial dilated cardiomyopathy

Introduction

Dilated cardiomyopathy (DCM) is the most common form of primary heart muscle disease characterized by dilation and systolic dysfunction of the left or both ventricles with normal ventricular wall thickness, in the absence of underlying conditions such as coronary artery disease, hypertension and valvular anomalies (1). It is the most frequent cause of congestive heart failure and sudden cardiac death in the young and is the most common indication for cardiac transplantation in both child and adult patients worldwide (1,2). DCM may occur as a result of acquired factors, including infectious agents, toxins, nutritional deficiencies and autoimmune disorders (1). However, in approximately 50% of DCM cases, no acquired risk factors can be found, and such DCM is defined as idiopathic DCM, of which 25–50% are familial with at least two affected close relatives in each family, hence termed familial DCM (3). A growing body of evidence reveals a genetic origin in many patients with idiopathic DCM, and a long list of mutations in more than 50 genes has been associated with familial DCM (3). However, these established DCM-associated genes only account for roughly one-third of cases, and each gene has a low mutational frequency, with most occurring in less than 1% of patients with DCM (4). Therefore, continued genetic studies in other cohorts of DCM patients are necessary in order to gain novel insight into the molecular basis for HCM.

The zinc finger-containing transcription factor GATA4 is abundantly expressed in the heart at various developmental stages and continues to be highly expressed in adult cardiomyocytes, where it mediates the expression of several crucial structural and regulatory genes, including those encoding atrial natriuretic factor (ANF), brain natriuretic factor, carnitine palmitoyltransferase Iβ, troponin I, troponin C, α- and β-myosin heavy chain (5–7). In humans, a great number of mutations in the GATA4 gene have been implicated in a wide variety of congenital cardiovascular malformations, including atrial septal defect, ventricular septal defect, tetralogy of Fallot, endocardial cushion defect, patent ductus arteriosus, pulmonary stenosis and hypoplastic right ventricle (8–16), highlighting the pivotal role of GATA4 in human cardiogenesis. Recently, a novel GATA4 mutation was reported to underlie familial DCM (17). In mice, GATA4 has been substantiated to be essential for proper cardiovascular morphogenesis, and homozygous GATA4 deletion causes early embryonic lethality due to abnormal embryogenesis and failure to form heart tube (18,19). Mice expressing 70% less GATA4 protein died between day 13.5 and 16.5 of gestation, and common atrioventricular canal, double outlet right ventricle and hypoplastic ventricular myocardium were observed in these embryos (20). Moreover, transgenic mice expressing GATA4 mutants suffered from various cardiac deformations, including septal defects, right ventricular hypoplasia, endocardial cushion defect, tetralogy of Fallot, double outlets of the right ventricle and cardiomyopathy, similar to abnormalities occurring in humans (9). More importantly, mice with cardiac-specific deletion of GATA4 survived into adulthood but showed progressive cardiac enlargement and functional impairment with increased rates of cardiomyocyte apoptosis that was positively correlated to GATA4 levels (21). These results demonstrate that GATA4 plays a key role in maintaining physiological homeostatic remodeling in adult hearts by promoting cell survival and regeneration and inhibiting programmed cell death (22–26).

GATA4 regulates downstream gene expression by forming complexes with other transcriptional factors, including NKX2-5 and TBX5 (7). NKX2-5 is another regulator required for normal cardiac development and its expression and functions overlap with those of GATA4 during embryogenesis (12). Furthermore, GATA4 and NKX2-5 have been shown to physically interact and synergistically regulate the expression of multiple important cardiac target genes, including those coding for ANF, T- and L-type Ca2+ channels, connexin40, α-actin, ID2 and LRRC10 (7). In mice, targeted disruption of NKX2-5 led to impaired cardiac growth and chamber formation, deranged gene regulatory network, and early embryonic death, while cardiac-specific knockout of NKX2-5 resulted in progressive cardiomyopathy and complete heart block (27–29). In humans, mutations in the NKX2-5 gene have been linked to diverse congenital heart diseases, including cardiac septal defects, tetralogy of Fallot, transposition of the great arteries, hypoplastic left heart, valvular deformities and left ventricular contractile dysfunction (30–32), and adult-onset DCM (33). These data suggest that GATA4 is an alternative candidate gene for DCM.

Materials and methods

Patients and controls

A cohort of 150 unrelated patients with idiopathic DCM was recruited from the Han Chinese population. The available relatives of the index patients were also enlisted. A total of 200 ethnically matched unrelated healthy individuals were enrolled as controls. All participants were evaluated by detailed medical history, physical examination, chest radiography, electrocardiogram, echocardiography and exercise performance testing. Cardiac catheterization, angiography, endomyocardial biopsy and cardiac magnetic resonance imaging were performed only if there was a strong clinical indication. Medical records were also reviewed in the case of deceased or unavailable relatives. Diagnosis of idiopathic DCM was made in accordance with the criteria established by the World Health Organization/International Society and Federation of Cardiology Task Force on the Classification of Cardiomyopathy: a left ventricular end-diastolic diameter >27 mm/m2 and an ejection fraction <40% or fractional shortening <25% in the absence of abnormal loading conditions, coronary artery disease, congenital heart lesions, and other systemic diseases (17,34). Individuals were excluded if they had insufficient echocardiographic image quality, or coexistent conditions that may lead to contractile dysfunction, such as uncontrolled systemic hypertension, coronary artery disease or valvular heart disease. Familial DCM was defined as having two or more first-degree relatives with idiopathic DCM. Peripheral venous blood samples from all the participants were prepared. The clinical studies were performed with investigators blinded to the results of the genotypes. This study conformed to the principles of the Declaration of Helsinki, and the study protocol was approved by the local institutional ethics committee. Written informed consent was obtained from all participants prior to the study.

Genotyping

Genomic DNA was extracted from blood samples obtained from all participants with the Wizard Genomic DNA purification kit (Promega, Madison, WI, USA). The coding exons and exon-intron boundaries of the GATA4 gene were sequenced in 150 unrelated patients with idiopathic DCM. When a mutation was found in an index patient, the available relatives of the mutation carrier and 200 unrelated healthy controls were genotyped for GATA4. The referential genomic DNA sequence of GATA4 was derived from GenBank (accession no. NC_000008). The primer pairs used to amplify the entire coding region and flanking splice junction sites of GATA4 by polymerase chain reaction (PCR) were designed as described previously (11). The PCR was conducted using HotStar Taq DNA polymerase (Qiagen, Hilden, Germany) on a PE 9700 thermal cycler (Applied Biosystems, Foster, CA, USA) with standard conditions and concentrations of reagents. Amplified products were purified with the QIAquick Gel Extraction kit (Qiagen). Both strands of each PCR product were sequenced with a BigDye® Terminator v3.1 Cycle Sequencing kit under an ABI PRISM 3130xl DNA analyzer (both from Applied Biosystems). DNA sequences were viewed and analyzed with the DNA Sequencing Analysis Software v5.1 (Applied Biosystems). The variant was validated by re-sequencing of an independent PCR-generated amplicon from the same subject. In addition, for an identified sequence variant, the single nucleotide polymorphism (SNP; http://www.ncbi.nlm.nih.gov/SNP) and human gene mutation (HGM; http://www.hgmd.org) databases were queried to confirm its novelty.

Alignment of multiple GATA4 protein sequences

Multiple GATA4 protein sequences among species were aligned using the online MUSCLE program, version 3.6 (http://www.ncbi.nlm.nih.gov/).

Prediction of the disease-causing potential of a GATA4 sequence variation

The causative potential of a GATA4 sequence variation was predicted by MutationTaster (an online program at http://www.mutationtaster.org), which automatically provides a probability for the variation to be either a pathogenic mutation or a benign polymorphism. Of note, the P-value used here is the probability of the correct prediction rather than the probability of error as used in t-test statistics (i.e., a value close to 1 indicates a high accuracy of the prediction). Additionally, another online program PolyPhen-2 (http://genetics.bwh.harvard.edu/pph2) was also used to evaluate the pathogenic likeliness of a variation.

Expression plasmids and site-directed mutagenesis

The recombinant expression vector GATA4-pSSRa and the ANF-luciferase (ANF-luc) reporter plasmid, which contains the 2,600-bp 5′-flanking region of the ANF gene, were kindly provided by Dr Ichiro Shiojima of the Chiba University School of Medicine, Japan. The identified mutation was introduced into the wild-type GATA4 using a QuickChange II XL Site-Directed Mutagenesis kit (Stratagene, La Jolla, CA, USA) with a complementary pair of primers. The mutant was sequenced to confirm the desired mutation and to exclude any other sequence variations.

Reporter gene assays

HeLa cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% fetal calf serum. The internal control reporter plasmid pGL4.75 (hRluc/CMV; Promega) was used in transient transfection analyses to evaluate the transcriptional activity of the GATA4 mutant. HeLa cells were transfected with 0.4 μg of wild-type or mutant GATA4-pSSRa, 1.0 μg of ANF-luc, and 0.04 μg of pGL4.75 using PolyFect transfection reagent (Qiagen). For co-transfection experiments, 0.2 μg of wild-type GATA4-pSSRa, 0.2 μg of mutant GATA4-pSSRa, 1.0 μg of ANF-luc, and 0.04 μg of pGL4.75 were used. Firefly luciferase and Renilla luciferase activities were measured with the Dual-Glo luciferase assay system (Promega) 48 h after transfection. The activity of the ANF promoter was presented as fold activation of firefly luciferase relative to Renilla luciferase. Three independent experiments were performed at minimum for wild-type and mutant GATA4.

Statistical analysis

Data are expressed as means ± standard deviation (SD). Continuous variables were tested for normality of distribution, and the Student’s unpaired t-test was used for comparison of numeric variables between two groups. Comparison of the categorical variables between two groups was performed using Pearson’s χ2 test or Fisher’s exact test when appropriate. A two-tailed P-value of <0.05 indicated statistical significance.

Results

Clinical characteristics of the study subjects

A total of 150 unrelated patients with idiopathic DCM were clinically evaluated in contrast to 200 control individuals. None had apparent traditional risk factors for DCM. All of the patients manifested with a typical DCM phenotype as described previously (34). The control individuals had no evidence of structural cardiac diseases, and their echocardiogram results were normal. The baseline clinical characteristics of the study subjects are summarized in Table I.

Table I Baseline clinical characteristics of the patients and controls.

Table I

Baseline clinical characteristics of the patients and controls.

Parameters	Patients (n=150)	Controls (n=200)	P-value
Mean age (years)	45.6±12.5	47.2±10.9	0.2029
Male, n (%)	82 (54.7)	111 (55.5)	0.8767
Family history of DCM, n (%)	65 (43.3)	0 (0)	<0.0001
SBP (mmHg)	112.8±15.3	120.0±13.6	0.0001
DBP (mmHg)	71.4±9.1	82.5±8.6	<0.0001
HR (bpm)	110.5±16.4	78.3±10.7	<0.0001
LVEDD (mm)	72.6±8.3	47.9±6.0	<0.0001
LVESD (mm)	59.5±9.8	35.0±5.6	<0.0001
LVEF (%)	34.7±10.0	65.2±7.4	<0.0001
NYHA function class (%)
I	23 (15.3)	NA	NA
II	58 (38.7)	NA	NA
III	50 (33.3)	NA	NA
IV	19 (12.7)	NA	NA

[i] DCM, dilated cardiomyopathy; SBP, systolic blood pressure; DBP, diastolic blood pressure; HR, heart rate; LVEDD, left ventricular end-diastolic diameter; LVESD, left ventricular end-systolic diameter; LVEF, left ventricular ejection fraction; NYHA, New York Heart Association; NA, not applicable or not available.

GATA4 mutation

By direct sequencing of the GATA4 gene, a heterozygous mutation was identified in 1 out of 150 unrelated patients with idiopathic DCM, with a mutational prevalence of ~0.67%. Specifically, a substitution of C for G in the first nucleotide of codon 291 (c.871G>C), predicting the transition of valine (V) into leucine (L) at amino acid position 291 (p.V291L) was identified in the proband from family 1. The sequence chromatograms showing the detected heterozygous GATA4 mutation of c.871G>C compared with its control sequence are shown in Fig. 1. A schematic diagram of GATA4 protein depicting the structural domains and location of the mutation identified in this study is presented in Fig. 2. The missense mutation was neither observed in the control population nor reported in the SNP and HGM databases. The genetic scan of the family showed that the mutation was present in all affected living family members, but absent in the unaffected family members examined. Analysis of the pedigree demonstrated that the mutation co-segregated with DCM was transmitted in an autosomal dominant pattern in the family with complete penetrance. The pedigree structure of the family is illustrated in Fig. 3. The phenotypic characteristics and status of the GATA4 mutation of the affected living family members are listed in Table II.

Figure 1 Sequence electropherograms showing the GATA4 variation compared with its control. The arrow indicates the heterozygous nucleotides of G/C in the proband (mutant) or the homozygous nucleotides of G/G in the corresponding control individual (wild-type). The rectangle denotes the nucleotides comprising a codon of GATA4.

Figure 2 Schematic diagram of the GATA4 protein structure with the dilated cardiomyopathy-associated mutation indicated. The mutation identified in the patients with dilated cardiomyopathy is shown above the structural domains. NH2, amino-terminus; TAD, transcriptional activation domain; ZF, zinc finger; NLS, nuclear localization signal; COOH, carboxyl-terminus.

Figure 3 Pedigree structure of the family with dilated cardiomyopathy. Family members are identified by generations and numbers. Square, male family member; circle, female member; symbols with a slash, deceased members; closed symbols, affected members; open symbols, unaffected members; arrow, proband; +, carrier of the heterozygous missense mutation; −, non-carrier.

Table II Phenotypic characteristics and status of the GATA4 mutation in the affected living pedigree members.

Table II

Phenotypic characteristics and status of the GATA4 mutation in the affected living pedigree members.

Individual	Gender	Age (years)	Cardiac phenotype	LVEDD (mm)	LVESD (mm)	LVEF (%)	ECG findings	GATA4 mutation
III-1	M	53	DCM, ASD	75	68	32	PAF, AVB, RBBB	+/−
III-6	F	46	DCM	82	71	27		+/−
IV-1	F	27	DCM	60	52	39		+/−

[i] M, male; F, female; DCM, dilated cardiomyopathy; ASD, atrial septal defect; LVEDD, left ventricular end-diastolic diameter; LVESD, left ventricular end-systolic diameter; LVEF, left ventricular ejection fraction; PAF, paroxysmal atrial fibrillation; AVB, atrioventricular conduction block; RBBB, right bundle branch block; +, presence of mutation; −, absence of mutation.

In addition, individual III-1 and his mother (II-2) also had documented congenital atrial septal defect and paroxysmal atrial fibrillation as well as first-degree atrioventricular conduction block and incomplete right bundle branch block.

Multiple alignments of GATA4 protein sequences

A cross-species alignment of GATA4 protein sequences showed that the altered amino acid p.V291 was completely conserved evolutionarily (Fig. 4).

Figure 4 Multiple alignments of GATA4 protein sequences among species. The altered amino acid of p.V291 is completely conserved evolutionarily across species.

Disease-causing potential of the GATA4 variation

The GATA4 sequence variation of c.871G>C was predicted by MutationTaster to be a disease-causing mutation with a P-value of nearly 1.0. No SNPs in the altered region were found in the MutationTaster database. This GATA4 sequence variation was also predicted by PolyPhen-2 to be probably damaging, with a score of 0.997 (sensitivity 0.41; specificity 0.98).

Transcriptional activity of the GATA4 mutant

The same amount (0.4 μg) of wild-type and mutant GATA4 activated the ANF promoter by ~10- and 3-fold, respectively (Fig. 5). When the same amount of wild-type GATA4 (0.2 μg) was co-transfected with mutant GATA4 (0.2 μg), the induced activation of the ANF promoter was ~6-fold. These results suggest that the GATA4 mutant has a significantly reduced activation activity compared with the wild-type counterpart.

Figure 5 Functional impairment results from the GATA4 mutation. Activation of the atrial natriuretic factor promoter driven luciferase reporter in HeLa cells by wild-type (WT) or V291L-mutant GATA4, alone or together, showed significantly reduced transcriptional activation by the mutant protein. Experiments were performed in triplicate, and mean and standard deviations are shown. **P<0.001 and *P<0.005, respectively, when compared with wild-type GATA4.

Discussion

In the present study, a novel heterozygous GATA4 mutation of p.V291L was identified in a family with idiopathic DCM. The missense mutation co-segregated with DCM in the family and was absent in the 400 reference chromosomes from an ethnically matched control population. A cross-species alignment of multiple GATA4 protein sequences showed that the altered amino acid was completely conserved evolutionarily. Functional analysis revealed that the mutant was associated with significantly reduced transcriptional activity. Therefore, it is likely that GATA4 loss-of-function mutation predisposes these mutation carriers to DCM.

It has been verified that GATA4 is a transcriptional activator of several genes expressed during cardiac development, including the ANF gene (7). Hence, the functional effect of the GATA4 mutation may be investigated by assaying the transcriptional activity of the ANF promoter in cells expressing GATA4. In the present study, the functional role of the novel p.V291L mutation of GATA4 identified in the familial DCM patients was characterized by transcriptional activity analysis. The data showed significantly diminished transcriptional activity on a target gene. These results support that the haploinsufficiency or dominant-negative effect resulting from the GATA4 mutation is potentially an alternative pathological mechanism of DCM.

The findings that GATA4 loss-of-function mutation enhances the susceptibility to DCM may be partially ascribed to the developmental and regenerative defects of the myocardium as well as abnormal heart remodeling (17). During embryonic genesis, GATA4 is required for activation and maintenance of the core cardiac regulatory network, and GATA4-null mutations suppress myocardial specification and maturation, giving rise to death (35). GATA4 also plays a central role in the postnatal maturation and homeostasis of cardiomyocytes and adult heart function as well as adaptation (21). Mice with cardiomyocyte-restricted deletion of GATA4 were viable and survived into adulthood, but they underwent a progressive deterioration in cardiac function and enlargement of the heart in adulthood. Furthermore, in this mouse model, pressure overload or exercise stimulation failed to elicit cardiac hypertrophy, but induced rapid decompensation, precipitous heart failure and increased apoptosis (21). In contrast, overexpression of GATA4 in the heart was sufficient for inducing cardiac hypertrophy (36). In humans, mutations in GATA4 and its transcriptionally cooperative partners, including NKX2-2 and TBX20, have been associated with familial DCM (17,33,37). Taken together, these findings provide evidence that the GATA4 mutation contributes to DCM.

In addition, transcriptions of a number of important cardiac genes are activated by GATA4, and mutations in multiple target molecules have been found to be responsible for DCM, including α-actin, α-myosin heavy chain, troponin C and troponin I (3,7). Therefore, functionally compromised GATA4 increases the vulnerability to DCM probably by reducing expression of target genes.

Similar with previous studies (8–16,38–40), in the present study, congenital heart disease and paroxysmal atrial fibrillation were observed in 2 patients harboring the GATA4 mutation. In addition, the other 2 members of the GATA family, GATA5 and GATA6 have similar expression profile and functional characteristics with GATA4 (5), and mutations in GATA5 and GATA6 are also involved in congenital heart disease and atrial fibrillation (41–56). These observational results underscore the critical role of GATA transcription factors in the development, remodeling and function of the heart.

In conclusion, the present study expands the mutational spectrum of GATA4 linked to DCM and provides novel insight into the molecular pathogenesis of DCM, suggesting potential implications in prenatal prophylaxis and personalized treatment of DCM.

Acknowledgements

We are thankful to the participants for their dedication to the study. The present study was supported by grants from the National Natural Science Fund of China (81070153, 81270161 and 81270314), and the National Basic Research Program of China (2010CB912604).

References