Sensitivity and reproducibility of conventional qualitative and quantitative PCR assays for detection of the t(14;18)(q32;q21) chromosomal translocation in biopsy material from patients with follicular lymphoma

  • Authors:
    • Ira Kokovic
    • Barbara Jezersek Novakovic
    • Snjezana Frkovic Grazio
    • Srdjan Novakovic
  • View Affiliations

  • Published online on: January 1, 2009     https://doi.org/10.3892/ijmm_00000096
  • Pages: 9-15
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Abstract

Follicular lymphoma (FL) is characterized by the t(14;18)(q32;q21) chromosomal translocation which can be detected by polymerase chain reaction (PCR) in approximately 70% of cases. The aim of our retrospective study was to evaluate the sensitivity and the reproducibility of both conventional qualitative and quantitative PCR assays for detection of the t(14;18)(q32;q21) chromosomal translocation in biopsy material. Fifty-seven formalin-fixed, paraffin-embedded tumor lymph node (LN) specimens from 50 patients with FL were included in the study. Qualitative PCR was performed with primer sets specific for the MBR, far3'-MBR and the mcr regions, respectively. Quantitative PCR was performed using the LightCycler®instrument and the LightCycler® - t(14;18) Quantification Kit (MBR). The overall detection rate of the t(14;18) in our study (52.6%) was in accordance with the literature. Of the t(14;18)-positive cases, 49.1% had breakpoints within the MBR and only 3.5% had breakpoints within the mcr. The most sensitive method was LightCycler-based PCR with a detection rate of 47.4%, followed by MBR1,2 assay (43.9%). We observed good agreement between qualitative MBR1,2 and quantitative LightCycler-based assay with a slightly higher detection rate of the quantitative method. The sensitivities of both methods were in accordance with results from other studies. Since LightCycler-based assay detects only breakpoints within the MBR, qualitative PCR should be employed in routine diagnostic settings for detection of breakpoints within the mcr and far3'-MBR regions.

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January 2009
Volume 23 Issue 1

Print ISSN: 1107-3756
Online ISSN:1791-244X

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Spandidos Publications style
Kokovic I, Novakovic BJ, Grazio SF and Novakovic S: Sensitivity and reproducibility of conventional qualitative and quantitative PCR assays for detection of the t(14;18)(q32;q21) chromosomal translocation in biopsy material from patients with follicular lymphoma. Int J Mol Med 23: 9-15, 2009
APA
Kokovic, I., Novakovic, B.J., Grazio, S.F., & Novakovic, S. (2009). Sensitivity and reproducibility of conventional qualitative and quantitative PCR assays for detection of the t(14;18)(q32;q21) chromosomal translocation in biopsy material from patients with follicular lymphoma. International Journal of Molecular Medicine, 23, 9-15. https://doi.org/10.3892/ijmm_00000096
MLA
Kokovic, I., Novakovic, B. J., Grazio, S. F., Novakovic, S."Sensitivity and reproducibility of conventional qualitative and quantitative PCR assays for detection of the t(14;18)(q32;q21) chromosomal translocation in biopsy material from patients with follicular lymphoma". International Journal of Molecular Medicine 23.1 (2009): 9-15.
Chicago
Kokovic, I., Novakovic, B. J., Grazio, S. F., Novakovic, S."Sensitivity and reproducibility of conventional qualitative and quantitative PCR assays for detection of the t(14;18)(q32;q21) chromosomal translocation in biopsy material from patients with follicular lymphoma". International Journal of Molecular Medicine 23, no. 1 (2009): 9-15. https://doi.org/10.3892/ijmm_00000096