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Expression profiles of long noncoding RNAs associated with the NSUN2 gene in HepG2 cells

  • Authors:
    • Zhen Sun
    • Shonglei Xue
    • Hui Xu
    • Xuming Hu
    • Shihao Chen
    • Zhe Yang
    • Yu Yang
    • Juan Ouyang
    • Hengmi Cui
  • View Affiliations / Copyright

    Affiliations: Institute of Epigenetics and Epigenomics and College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu 225009, P.R. China
    Copyright: © Sun et al. This is an open access article distributed under the terms of Creative Commons Attribution License.
  • Pages: 2999-3008
    |
    Published online on: February 25, 2019
       https://doi.org/10.3892/mmr.2019.9984
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Abstract

NOP2/Sun domain family member 2 (NSUN2) is upregulated in numerous types of tumors and may be implicated in multiple biological processes, including cell proliferation, migration and human tumorigenesis. However, little is known about how NSUN2 serves a role in these processes. In the present study, expression profiles of long noncoding RNAs (lncRNAs) and mRNAs were developed in NSUN2‑deficient HepG2 cells by RNA‑sequencing analysis. A total of 757 lncRNAs were differentially expressed, 392 of which were upregulated, and 365 were downregulated compared with wild‑type HepG2 cells. Moreover, 212 lncRNAs were co‑expressed with 368 target mRNAs. It was also observed that 253 pairs of lncRNAs and mRNAs exhibited negative correlations and that 290 pairs had positive correlations. Bioinformatics analysis indicated that these lncRNAs regulated by NSUN2 were associated with ‘signal transduction’, ‘extracellular exosome’ and ‘calcium ion binding’, and were enriched in ‘pathways in cancer’, ‘PI3K‑Akt signaling pathway’ and ‘ECM‑receptor interaction pathway’. These results illustrate the landscape and co‑expression network of lncRNAs regulated by NSUN2 and provide invaluable information for studying the molecular function of NSUN2.
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Copy and paste a formatted citation
Spandidos Publications style
Sun Z, Xue S, Xu H, Hu X, Chen S, Yang Z, Yang Y, Ouyang J and Cui H: Expression profiles of long noncoding RNAs associated with the NSUN2 gene in HepG2 cells. Mol Med Rep 19: 2999-3008, 2019.
APA
Sun, Z., Xue, S., Xu, H., Hu, X., Chen, S., Yang, Z. ... Cui, H. (2019). Expression profiles of long noncoding RNAs associated with the NSUN2 gene in HepG2 cells. Molecular Medicine Reports, 19, 2999-3008. https://doi.org/10.3892/mmr.2019.9984
MLA
Sun, Z., Xue, S., Xu, H., Hu, X., Chen, S., Yang, Z., Yang, Y., Ouyang, J., Cui, H."Expression profiles of long noncoding RNAs associated with the NSUN2 gene in HepG2 cells". Molecular Medicine Reports 19.4 (2019): 2999-3008.
Chicago
Sun, Z., Xue, S., Xu, H., Hu, X., Chen, S., Yang, Z., Yang, Y., Ouyang, J., Cui, H."Expression profiles of long noncoding RNAs associated with the NSUN2 gene in HepG2 cells". Molecular Medicine Reports 19, no. 4 (2019): 2999-3008. https://doi.org/10.3892/mmr.2019.9984
Copy and paste a formatted citation
x
Spandidos Publications style
Sun Z, Xue S, Xu H, Hu X, Chen S, Yang Z, Yang Y, Ouyang J and Cui H: Expression profiles of long noncoding RNAs associated with the NSUN2 gene in HepG2 cells. Mol Med Rep 19: 2999-3008, 2019.
APA
Sun, Z., Xue, S., Xu, H., Hu, X., Chen, S., Yang, Z. ... Cui, H. (2019). Expression profiles of long noncoding RNAs associated with the NSUN2 gene in HepG2 cells. Molecular Medicine Reports, 19, 2999-3008. https://doi.org/10.3892/mmr.2019.9984
MLA
Sun, Z., Xue, S., Xu, H., Hu, X., Chen, S., Yang, Z., Yang, Y., Ouyang, J., Cui, H."Expression profiles of long noncoding RNAs associated with the NSUN2 gene in HepG2 cells". Molecular Medicine Reports 19.4 (2019): 2999-3008.
Chicago
Sun, Z., Xue, S., Xu, H., Hu, X., Chen, S., Yang, Z., Yang, Y., Ouyang, J., Cui, H."Expression profiles of long noncoding RNAs associated with the NSUN2 gene in HepG2 cells". Molecular Medicine Reports 19, no. 4 (2019): 2999-3008. https://doi.org/10.3892/mmr.2019.9984
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