Open Access

Using mRNA deep sequencing to analyze differentially expressed genes during Panax notoginseng saponin treatment of ischemic stroke

  • Authors:
    • Jun Lin
    • Ping Liang
    • Qing Huang
    • Chongdong Jian
    • Jianmin Huang
    • Xionglin Tang
    • Xuebin Li
    • Yanling Liao
    • Xiaohua Huang
    • Wenhua Huang
    • Li Su
    • Lanqing Meng
  • View Affiliations

  • Published online on: September 29, 2020     https://doi.org/10.3892/mmr.2020.11550
  • Pages: 4743-4753
  • Copyright: © Lin et al. This is an open access article distributed under the terms of Creative Commons Attribution License.

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Abstract

Treatment with Panax notoginseng saponin (PNS) can prevent neurological damage in middle cerebral artery occlusion model rats to promote recovery after a stroke. However, the exact molecular mechanisms are unknown and require further study. In the present study, mRNA sequencing was employed to investigate differential gene expression between model and sham groups, and between model and PNS‑treated groups. Enrichment of gene data was performed using Gene Ontology analysis and the Kyoto Encyclopedia of Genes and Genomes database. Hub genes were identified and networks were constructed using Cytoscape that were further verified by reverse transcription‑quantitative PCR. A total of 1,104 genes of interest were found, which included 690 upregulated and 414 downregulated genes that were identified when the model was compared with the sham group. Additionally, 817 genes of interest, which included 390 upregulated and 427 downregulated genes, were identified when the PNS‑treated group was compared with the model group. There were 303 overlapping genes of interest between the analysis of model to sham groups, and the analysis of model to PNS‑treated groups. The top 10 genes from the 303 aberrantly expressed genes of interest included ubiquitin conjugating enzyme E2 variant 2, small ubiquitin‑related modifier 1, small RNA binding exonuclease protection factor La, Finkel‑Biskis‑Reilly murine sarcoma virus (FBR‑MuSV) ubiquitously expressed, centrosomal protein 290 kDa, DNA‑directed RNA polymerase II subunit K, cullin‑4B, matrin‑3 and vascular endothelial growth factor receptor 2. In conclusion, these genes may be important in the underlying mechanism of PNS treatment in ischemic stroke. Additionally, the present data provided novel insight into the pathogenesis of ischemic stroke.
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December-2020
Volume 22 Issue 6

Print ISSN: 1791-2997
Online ISSN:1791-3004

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Spandidos Publications style
Lin J, Liang P, Huang Q, Jian C, Huang J, Tang X, Li X, Liao Y, Huang X, Huang W, Huang W, et al: Using mRNA deep sequencing to analyze differentially expressed genes during Panax notoginseng saponin treatment of ischemic stroke. Mol Med Rep 22: 4743-4753, 2020
APA
Lin, J., Liang, P., Huang, Q., Jian, C., Huang, J., Tang, X. ... Meng, L. (2020). Using mRNA deep sequencing to analyze differentially expressed genes during Panax notoginseng saponin treatment of ischemic stroke. Molecular Medicine Reports, 22, 4743-4753. https://doi.org/10.3892/mmr.2020.11550
MLA
Lin, J., Liang, P., Huang, Q., Jian, C., Huang, J., Tang, X., Li, X., Liao, Y., Huang, X., Huang, W., Su, L., Meng, L."Using mRNA deep sequencing to analyze differentially expressed genes during Panax notoginseng saponin treatment of ischemic stroke". Molecular Medicine Reports 22.6 (2020): 4743-4753.
Chicago
Lin, J., Liang, P., Huang, Q., Jian, C., Huang, J., Tang, X., Li, X., Liao, Y., Huang, X., Huang, W., Su, L., Meng, L."Using mRNA deep sequencing to analyze differentially expressed genes during Panax notoginseng saponin treatment of ischemic stroke". Molecular Medicine Reports 22, no. 6 (2020): 4743-4753. https://doi.org/10.3892/mmr.2020.11550