Open Access

Silencing long non‑coding RNA, differentiation antagonizing non‑protein coding RNA promotes apoptosis and inhibits tumor growth in colon cancer

  • Authors:
    • Xiao‑Jin Yang
    • Jing‑Jing Zhao
    • Wei‑Jun Chen
    • Gen‑Gen Zhang
    • Wei Wang
    • Han‑Chuan Tao
  • View Affiliations

  • Published online on: June 28, 2018     https://doi.org/10.3892/ol.2018.9034
  • Pages: 2865-2872
  • Copyright: © Yang et al. This is an open access article distributed under the terms of Creative Commons Attribution License.

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Abstract

The long non‑coding RNA (lncRNA) differentiation antagonizing non‑protein coding RNA (DANCR) has been reported to be a novel potential biomarker for colon cancer prognosis. However, its functional role in colon cancer remains unknown. In the present study, DANCR expression in colon cancer cell lines was determined by reverse transcription‑quantitative polymerase chain reaction. Cell Counting kit‑8 assay, colony formation assay, flow cytometry, Hoechst 33258 staining and western blotting were utilized to investigate the effect and mechanism of DANCR in the regulation of colon cancer growth. Establishment of a xenograft tumor model followed by terminal deoxynucleotidyl transferase (TdT) dUTP nick‑end labeling assay and immunohistochemical staining were performed to confirm the findings in vitro. DANCR was revealed to be overexpressed in all human colon cancer cell lines. Silencing DANCR by small interfering RNA significantly inhibited cell proliferation and colony formation. Flow cytometry analyses and Hoechst 33258 staining revealed that apoptosis was induced upon DANCR‑knockdown. Silencing DANCR was revealed to efficiently impair colon tumor growth by promoting caspase 3 expression and tumor apoptosis. In summary, the results of the present study demonstrated that DANCR is a potential therapeutic target in colon cancer.

Introduction

Colon cancer is the third most common type of cancer and the fourth leading cause of cancer-associated mortality worldwide (1,2). Multiple factors are involved in the occurrence and development of colon cancer, including uncontrolled cell proliferation, angiogenesis and suppression of apoptosis (35). Mutations are present in almost all types of colon cancer, and point mutations in the KRAS gene can lead to activation of potentially carcinogenic RAS protein activity (6). Therefore, understanding the pathogenesis of colon cancer and elucidating the functional role of point mutations in different genes are imperative to improving treatment strategies for patients.

Non-coding RNAs (ncRNAs) have no protein-coding abilities but may act as key regulators to control biological and pathological processes (7). A large number of ncRNAs that function as central orchestrators of cell-specific gene networks have been identified (8). An important subclass of these ncRNAs are long non-coding RNAs (lncRNAs) that are broadly defined as regulatory non-coding transcripts of longer than 200 nucleotides. Thus far, >100,000 lncRNA genes have been described in the human genome, which is greater than the number of protein-coding and microRNA genes combined. Although their biological roles and mechanisms of function remain largely elusive, lncRNAs have critical roles in the development process, cellular homeostasis, genomic imprinting and pluripotency of embryonic stem cells (9). The importance of lncRNA regulation has been emphasized by their roles in the etiology of human diseases (1013). Several lncRNAs are involved in carcinogenesis, disease progression, metastasis and/or chemoresistance of human cancer types (14,15). Thus, lncRNAs are novel therapeutic targets in cancer.

The novel lncRNA differentiation antagonizing non-protein coding RNA (DANCR) is located on human chromosome 4, with the closest adjacent annotated genes located 54.8 kb upstream of USP46 and 28.7 kb downstream from ERVMER34-1 and the ANCR locus (14). Previous studies have demonstrated that DANCR is involved in the differentiation of progenitors and osteoblasts (16,17). Recently, abundant evidence has suggested that DANCR is an oncogene in various types of cancer, including breast cancer (15), gastric cancer (16), prostate cancer (17) and hepatocellular carcinoma (18). In colon cancer, DANCR expression was increased, and high DANCR expression was revealed to be correlated with a poor overall survival (OS) and disease-free survival (DFS) in patients (19). However, the biological functions and significance of DANCR in colon cancer have not yet been established. In the present study, DANCR expression in colon cancer cell lines was determined by reverse transcription-quantitative polymerase chain reaction (RT-qPCR) and Cell Counting kit-8 assay. A colony formation assay, flow cytometry, Hoechst 33258 staining and western blotting were employed to investigate the effects and mechanisms of DANCR in regulating colon cancer growth. Establishment of a xenograft tumor model was followed by terminal deoxynucleotidyl transferase (TdT) dUTP nick-end labeling (TUNEL) assay. Immunohistochemical staining was performed to confirm the findings in vitro.

Materials and methods

Cancer cell lines and cell culture

Human colon cancer SW620, SW480, HCT116, HT29, HCT15 and Caco-2 cell lines and normal human colon epithelial HCoEpiC cells were obtained from American Type Culture Collection (Manassas, VA, USA). Cells were cultured in Dulbecco's modified Eagle's medium (DMEM) supplemented with 10% fetal bovine serum (FBS; Invitrogen; Thermo Fisher Scientific, Inc., Waltham, MA, USA), 100 U/ml penicillin G and 100 µg/ml streptomycin (Thermo Fisher Scientific, Inc.) in a humidified atmosphere of 5% CO2 at 37°C.

Generation of stably infected cell lines

Lentiviral vector-based short hairpin RNA (shRNA) targeting non-specific control (NC) or human LncRNA DANCR (5′-GGAGCTAGAGCAGTGACAATG-3′) were purchased from Shanghai Co., Ltd., GenePharma (Shanghai, China). Cells achieved 70–80% confluence in Lv-shNC and Lv-shDANCR infection. The stably infected cells were selected by adding puromycin (2 µg/ml), and were collected for further qPCR analysis to confirm the efficient knockdown of DANCR in colon cancer cell lines.

RNA isolation and RT-qPCR

Total cellular RNA was isolated from colon cancer cells using TRIzol (Thermo Fisher Scientific, Inc.) according to the manufacturer's protocols. The RNA was reverse-transcribed into cDNA by using a reverse transcription kit (RR047A; Takara Bio, Inc., Otsu, Japan) according to the manufacturer's protocol. Real-time reverse transcription-PCR was performed with a SYBR Green PCR kit (RR902A; Takara Bio, Inc.) and ABI 7300 Real-Time PCR System (Applied Biosystems; Thermo Fisher Scientific, Inc.). Amplification was performed as follows: Incubation at 95°C for 30 sec, followed by 40 cycles of denaturation at 95°C for 5 sec and subsequent annealing and extension at 58°C for 30 sec. Relative gene expression was calculated using the 2−ΔΔCq method (20). For fold change analysis, GAPDH (forward, 5′-TGCGTGACATTAAGGAGAA-3′ and reverse, 5′AAGGAAGGCTGGAAGAGT-3′) expression was analyzed to normalize target gene expression. Primer sequence of DANCR used in this study are as follow (forward, 5′-GCCACTATGTAGAGGGTTTC-3′ and reverse, 5′-ACCTGCGCTAAGAACTGAGG-3′).

Cell Counting kit-8 assay

Cells (1,000 cells/well) were plated in 96-well plates. Cell proliferation was measured at 0, 24, 48 and 72 h post cell plating. Cell Counting kit-8 assay (Beyotime Institute of Biotechnology, Beijing, China) was used for cell viability determination at a wavelength of OD 450 nm.

Western blotting

Cells were washed once with ice-cold PBS and lysed in radioimmunoprecipitation assay buffer (Beyotime Institute of Biotechnology) containing 1% protease inhibitors (Sigma-Aldrich; Merck KGaA, Darmstadt, Germany). Protein concentration was subsequently measured with a BCA kit (Thermo Fisher Scientific, Inc.), ~10 µg protein was separated with 8–12% SDS-PAGE gel and blotted onto polyvinylidene fluoride or polyvinylidene difluoride membranes (Merck KGaA, Darmstadt, Germany). Membranes were subsequently blocked with 5% milk at room temperature for 1 h and incubated with primary antibodies against caspase 3 (1:600; cat. no. 9665), caspase 8 (1:1,000; cat. no. 4790), caspase 9 (1:800; cat. no. 9508), p53 (1:1,200; cat. no. 2524), Cyto C (1:1,000; cat. no. 4280), Bcl-2 (1:1,200; cat. no. 3498), Bcl-xL (1:1,000; cat. no. 2762) and GAPDH (1:5,000; cat. no. 2118) (Cell Signaling Technology, Inc., Danvers, MA, USA) at 4°C overnight, followed by 3 washes with tris-buffered saline with tween and a 1 h incubation with horseradish peroxidase-conjugated secondary antibodies at room temperature (OriGene Technologies Inc., Beijing, China). Protein bands were visualized with an enhanced chemiluminescence kit (Merck KGaA). The density of bands was quantified by ImageJ software (version 1.48; National Institutes of Health, Bethesda, MD, USA).

Apoptosis analysis by flow cytometry

Cells were harvested and stained with Annexin V-FITC/PI Apoptosis Detection kit (Nanjing KeyGen Biotech Co., Ltd., Nanjing, China), according to the manufacturer's protocol. Apoptotic cells were assessed by flow cytometry (De Novo Software, Glendale, CA, USA). Each experiment was performed three times.

Hoechst 33258 staining

A total of 1×105 cells were plated in each well of the 6-well plates. After 24 h, the cells were fixed with 4% paraformaldehyde for 10 min at room temperature. Following washing with PBS 3 times, the cells were stained with Hoechst 33258 (Beyotime Institute of Biotechnology) in the dark for 15 min at room temperature. Images of the cells were captured using a fluorescence microscope (Olympus Corporation, Tokyo, Japan).

Colony formation assay

A total of 1,000 cells were plated in each well of the 6-well plates containing 2 ml DMEM medium (10% FBS). Following 7–10 days, the cells were fixed with 4% paraformaldehyde for 10 min at room temperature. Cells were washed with PBS 3 times, and subsequently stained with purple crystal (Beyotime Institute of Biotechnology) for 15 min at room temperature. The number of colonies were counted and analyzed. The assays were replicated three times.

Animal study

This study was approved by the Ethics Committee of Dongtai Municipal People's Hospital of Nantong University and complied with the animal guidelines. Ten 6-week-old female BALB/c nude mice (weighing between 18 and 20 g) were purchased from Hfkbio (Beijing, China; http://www.hfkbio.com/) and housed in a specific pathogen-free room (at a temperature of 22–25°C) with 12 h dark/light cycle and ad libitum access to food and water. SW480-shNC and SW480-shDANCR cells (5×106 cells/mouse) were subcutaneously injected into the right flank of (n=5 per experimental group). Tumor length and width were measured every five days from the tenth day post cell injection. Tumor volumes were calculated as ellipsoids (length × width2 × 0.52). At 30 days post cell injection, the mice were sacrificed and the tumors were removed and measured.

Terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) assay

Tumor tissue sections were examined for the presence of apoptotic cells using the DeadEnd™ Fluorometric TUNEL system (Promega Corporation, Madison, WI, USA) according to the manufacturer's protocol, in which fragmented DNA from apoptotic cells is end-labeled with the fluorophore. Following deparaffinization and rehydration, sections were fixed with 4% paraformaldehyde at room temperature (22–25°C) for 10 min, permeabilized with proteinase K for 8–10 min at room temperature (22–25°C), and repeatedly fixed. The sections were then covered with 50 ml terminal deoxynucleotidyl transferase mix for 1 h at 37°C in a humidified chamber. The coverslips were removed and the sections were immersed in 2× saline-sodium citrate buffer for 15 min, washed with PBS and mounted with glycerin (Beyotime Institute of Biotechnology) that included DAPI (Beyotime Institute of Biotechnology). Four random fluorescence images were captured using a fluorescence microscope (Olympus Corporation).

Immunohistochemical staining

Collected tumor tissues from mice injected with SW480 cells were fixed with 4% paraformaldehyde at room temperature for 48 h. Then, fixed tumor tissues were embedded in paraffin and sectioned into 4 µm slices. Following removal of the paraffin and antigen retrieval in citrate buffer (pH 6.0) at high temperature and pressure for 3 min, slices were blocked with 5% goat serum at room temperature (22–25°C) for 15 min and incubated overnight with anti-caspase 3 antibody (1:200; cat. no. 9662; Cell Signaling Technology, Inc.) at 4°C. Detection (inclusive of secondary antibody) was performed in an automated slide staining instrument (SP9001; OriGene Technologies, Inc.) by using a 3,3′-diaminobenzidine staining kit (Maixin, Fuzhou, China) and the slices were counterstained with hematoxylin (OriGene Technologies, Inc.) at room temperature for 3 min. All kits were used according to the manufacturer's protocol. Images of the slices were captured with a CX51 light microscope (magnification, ×20; Olympus Corporation). The caspase 3 positive, and total cell number in each frame were counted.

Statistical analysis

All data are presented as the mean ± standard deviations. Student's t-tests were performed to compare the difference between two groups and one-way analysis of variance followed by Turkey's multiple comparisons analysis was used to compare the difference among multi-groups. SPSS software (version 21.0, IBM Corp., Armonk, NY, USA), was used. P<0.05 was considered to indicate a statistically significant difference.

Results

Silencing DANCR inhibits colon cancer cell growth in vitro

To determine whether DANCR serves a pivotal role in colon cancer, we investigated the expression levels of lncRNA DANCR in several human colon cancer cell lines. Healthy human epithelial cells (HCoEpiC) were used as a control. It was revealed that DANCR was overexpressed in all the six colon cancer cell lines compared with HCoEpiC cells (Fig. 1A). Among the colon cancer cell lines, SW480 and HCT15 cells revealed a >10-fold increase in DANCR expression level (Fig. 1A). To investigate the biological effect of DANCR in colon cancer, lentivirus-based shRNA targeting DANCR was used to infect SW480 and HCT15 cells. Following puromycin selection, DANCR expression in SW480 and HCT15 cells that had been infected with shDANCR was decreased compared with shNC group (Fig. 1B and C). As a result, silencing DANCR significantly decreased SW480 and HCT15 cell proliferation (Fig. 1D and E) and colony formation (Fig. 1F and G), respectively. These data suggested that DANCR functions as an oncogene in colon cancer.

Silencing DANCR promotes cell apoptosis

To determine the potential mechanism of DANCR regulation of colon cancer cell proliferation, flow cytometry with Annexin V and PI staining was performed to detect cell apoptosis and Annexin V positive and PI negative cells were considered to be apoptotic cells. As shown in Fig. 2A and B, more apoptotic cells were observed in SW480-shDANCR (Fig. 2A; shDANCR vs. shNC: 19.07±1.22 vs. 6.72±0.71%) and HCT15-shDANCR cells (Fig. 2B; shDANCR vs. shNC: 16.17±1.02 vs. 5.63±0.82%), compared with shNC cells. Hoechst 33258 was also used to detect apoptotic cells and, in concordance with Annexin V/PI data, indicated that DANCR knockdown promotes cell apoptosis in SW480 (Fig. 2C) and HCT15 (Fig. 2D) cells. Collectively, these results suggested that silencing DANCR promotes cell apoptosis in colon cancer cells.

Silencing DANCR regulates caspase protein and upstream protein expression in colon cancer cells

To further determine the molecular mechanism behind the antitumor activity of DANCR knockdown in colon cancer cells, western blotting was employed to investigate the expression of caspase proteins and certain upstream proteins. It was revealed that silencing DANCR significantly induces caspase 3, caspase 8 and caspase 9 expression, which demonstrated low/no basal expression levels, in SW480 and HCT15 cells (Fig. 3A). Furthermore, shDANCR was revealed to promote p53 and cyto C expression and inhibit Bcl-2 and Bcl-xL expression in SW480 and HCT15 cells (Fig. 3B). These results suggested that silencing DANCR regulates caspase protein and upstream protein expression in colon cancer cells.

Silencing DANCR impairs colon tumor growth in vivo

To investigate the effect of DANCR on colon cancer growth in vivo, SW480 cells that were stably infected with shDANCR and shNC were subcutaneously injected into the right flank of 6-week-old female BALB/c nude mice. After 30 days, the mice were sacrificed and the tumors were visualized (Fig. 4A). The results revealed that tumors generated from SW480 cells infected with shDANCR grew significantly slower than the negative control, evidenced by the growth curve (Fig. 4B; final tumor volume of shNC vs. shDANCR: 959.2±107.3 vs. 498.5±73.4 mm3). Furthermore, silencing DANCR also caused a 58.7% reduction in the weight of SW480 cell-tumor (Fig. 4C; shNC vs. shDANCR: 1.04±0.13 vs. 0.43±0.06 g). These results suggested that DANCR was capable of regulating colon tumor growth generated from SW480 cells.

Silencing DANCR promotes tumor cell apoptosis and caspase 3 expression

As DANCR-knockdown appeared to promote cell apoptosis through the induction of caspase protein expression in colon cancer, the apoptotic cell number, and caspase 3 protein expression in SW480 tumors was further investigated. As shown in Fig. 5A, more apoptotic cells were observed in SW480-shDANCR tumors by TUNEL assay, compared with SW480-shNC tumors. Concurrently, an almost negligible number of caspase 3-positive tumor cells were observed in SW480-shNC tumor tissues (Fig. 5B). Of note, DANCR knockdown significantly promoted caspase 3 expression in SW480 tumors (Fig. 5B). These results provided further evidence for the role of DANCR knockdown in the induction of colon cancer cell apoptosis.

Discussion

Due to their critical roles in the development process, cellular homeostasis, genomic imprinting and pluripotency of embryonic stem cells (9), lncRNAs are involved in the carcinogenesis, disease progression, metastasis or chemoresistance of human cancer types (14,15). In the present study, it was demonstrated that lncRNA DANCR was overexpressed in almost all colon cancer cell lines (Fig. 1). Silencing DANCR significantly inhibited cell proliferation (Fig. 1), colony formation (Fig. 1) and tumor growth (Fig. 4), and induced apoptosis (Fig. 2) through regulating caspase proteins (Figs. 3 and 5) and the expression of upstream proteins (Fig. 3). The present study provides evidence of the functional role and mechanism of DANCR in colon cancer.

In a previous study by Sha et al (15), DANCR expression was revealed to be increased in triple-negative breast cancer (TNBC) tissues compared with adjacent normal tissues in 63 TNBC specimens. Patients with higher DANCR expression correlated with worse tumor-node-metastasis stages as well as a shorter overall survival (OS) using Kaplan-Meier analysis (15). DANCR was upregulated in the tumor tissues and plasma of patients with HCC, and its expression was highly correlated with microvascular and liver capsule invasion in hepatocellular carcinoma (HCC) (18). Further receiver operating characteristic analysis demonstrated that plasma DANCR exhibited significantly increased discriminatory power for differentiating patients with HCC from HVs and non-HCC patients compared with a-fetoprotein, which has been used as a biomarker for HCC diagnosis (18). In osteosarcoma tissues, DANCR was consistently significantly increased and its expression was an independent poor prognostic factor (21). DANCR was demonstrated to be increased in colorectal cancer (CRC) tissues compared with that in adjacent normal tissues and patients with high DANCR expression had a shorter OS and disease-free survival (DFS) compared with the low DANCR expression group (19). Of note, in a multivariate Cox model, DANCR was demonstrated to be an independent poor prognostic factor for OS and DFS in CRC (19). The present study, also demonstrated an increased expression of DANCR in the majority of colon cancer cell lines that were investigated (Fig. 1). These results are consistent with the findings by Liu et al (19) in patients with colon cancer.

DANCR has been demonstrated to have multiple functional roles in regulating cell fate. In synovium-derived MSCs, overexpression of DANCR can promote the proliferation and chondrogenesis of MSCs (22). Furthermore, DANCR functions as an oncogene in various types of cancer. In HCC, DANCR markedly increased stemness features of cancer cells to promote tumorigenesis and intra/extra-hepatic tumor colonization (23). In vivo xenograft experiments demonstrated that knockdown of DANCR in MDA-MB-231 cells reduced tumor progression significantly through inhibiting cell proliferation and invasion, and fewer cancer stem cells were observed in DANCR-knocked down MDAMB-231 cells (15). DANCR also promotes prostate cancer invasion and metastasis through repressing the expression of TIMP2/3 (17). Of note, DANCR could suppress 786O and ACHN proliferation, migration, and invasion, and induce apoptosis in renal cell carcinoma (24). In the present study, we demonstrated that DANCR-knockdown significantly inhibited cell proliferation, colony formation, and tumor growth in vitro and in vivo (Figs. 1 and 4). To the best of our knowledge, the present study is the first to provide evidence for understanding how knockdown of DANCR promotes apoptosis in colon cancer cells, which contradicts previous findings in renal cell carcinoma (24). The diverse roles of DANCR in apoptosis differed between the cells investigated in the present study.

In a previous study, the role of DANCR in regulating the stemness of HCC relied largely on an association with, and regulation of, CTNNB1 (23). In TNBC, knockdown of DANCR was associated with increased binding of EZH2 to the promoters of CD44 and ABCG2 (15). MiR-1305 serves as a downstream target of DANCR during the induction of cell proliferation and chondrogenic differentiation of synovium-derived MSCs (25). Components of the Wnt/b-catenin signaling pathway were also downstream targets of DANCR during odontoblast-like differentiation of human dental pulp cells. This was demonstrated by a decrease in the expression levels of p-GSK-3b and b-catenin upon DANCR overexpression (26). The present study also demonstrated that DANCR-knockdown promoted apoptosis in colon cancer through caspases (Fig. 3). However, further investigations are needed to determine the direct target of DANCR during the regulation of apoptosis in colon cancer.

In summary, the present study highlights the potential role of DANCR in regulating colon cancer growth in vitro and in vivo. We demonstrated that caspase proteins mediated apoptosis. These findings suggested that DANCR may be a novel therapeutic target in colon cancer. However, further investigations are required to determine the direct target of DANCR in the regulation of apoptosis in colon cancer.

Acknowledgements

Not applicable.

Funding

No funding was received.

Availability of data and materials

All data generated and/or analyzed during this study are included in this published article.

Authors' contributions

XJY and JJZ were involved in the acquisition of the data. WJC, GGZ and WW were involved in the analysis and interpretation of the data. HCT was involved in the conception and design of the present study.

Ethics approval and consent to participate

The present animal study was approved by the Ethics Committee of Dongtai Municipal People's Hospital of Nantong University and complied with the animal guidelines.

Consent for publication

Not applicable.

Competing interests

The authors declare that they have no competing interests.

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September-2018
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Spandidos Publications style
Yang XJ, Zhao JJ, Chen WJ, Zhang GG, Wang W and Tao HC: Silencing long non‑coding RNA, differentiation antagonizing non‑protein coding RNA promotes apoptosis and inhibits tumor growth in colon cancer. Oncol Lett 16: 2865-2872, 2018
APA
Yang, X., Zhao, J., Chen, W., Zhang, G., Wang, W., & Tao, H. (2018). Silencing long non‑coding RNA, differentiation antagonizing non‑protein coding RNA promotes apoptosis and inhibits tumor growth in colon cancer. Oncology Letters, 16, 2865-2872. https://doi.org/10.3892/ol.2018.9034
MLA
Yang, X., Zhao, J., Chen, W., Zhang, G., Wang, W., Tao, H."Silencing long non‑coding RNA, differentiation antagonizing non‑protein coding RNA promotes apoptosis and inhibits tumor growth in colon cancer". Oncology Letters 16.3 (2018): 2865-2872.
Chicago
Yang, X., Zhao, J., Chen, W., Zhang, G., Wang, W., Tao, H."Silencing long non‑coding RNA, differentiation antagonizing non‑protein coding RNA promotes apoptosis and inhibits tumor growth in colon cancer". Oncology Letters 16, no. 3 (2018): 2865-2872. https://doi.org/10.3892/ol.2018.9034