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Extraskeletal myxoid chondrosarcoma (EMC) is a rare, clinicopathologically distinct soft-tissue sarcoma and a subtype of chondrosarcoma, and it represents a malignant mesenchymal neoplasm of uncertain differentiation and exceptional rarity, accounting for <3% of all soft-tissue sarcomas, with an annual incidence of ~1 per million individuals. EMC is characterized histologically by bland-appearing spindle to stellate cells arranged in cords, reticular or lace-like patterns within abundant myxoid stroma and typically, a lack of overt hyaline cartilage differentiation (1). EMC most commonly arises in the deep soft tissues of the proximal limbs in middle-aged to older adults, predominantly affecting middle-aged adults (median age, 50 years) and showing a male-to-female ratio of ~2:1, with a predilection for the thigh and popliteal fossa, and less frequent involvement of the trunk (2). Despite its deceptively bland cytology, EMC has been associated with substantial risks of local recurrence and distant metastasis, most often to the lungs and soft tissues. Recurrent chromosomal rearrangements involving the nuclear receptor subfamily 4 group A member 3 (NR4A3) gene on chromosome 9q22 have emerged as highly characteristic and diagnostically informative hallmarks. The classic translocation is t(9;22)(q22;q12), which fuses Ewing sarcoma breakpoint region 1 (EWSR1) with nuclear receptor subfamily 4 group A member 3 (NR4A3). Other variant partners include TATA-box binding protein associated factor 15 (TAF15), rearranged through t(9;17)(q22;q11), and less commonly, transcription factor 12 (TCF12), involved in t(9;15)(q22;q21) (3,4). By contrast, primary intracranial EMC is exceedingly rare and has been reported to arise from the meninges or, less commonly, the brain parenchyma; its clinical and radiological features frequently overlap with meningioma, glioma and other sarcomas, complicating the formation of an accurate diagnosis (5). In the absence of large series and standardized treatment protocols, evaluation relies on integrated assessment combining imaging, histopathology and, where available, molecular genetics. The present study reports a case of adolescent intracranial EMC with high-grade features and outlines the diagnostic pitfalls and management considerations pertinent to this uncommon entity.
In April 2025, a 17-year-old male patient presented to the Department of Neurosurgery at Yantai Yuhuangding Hospital (Yantai, China) with a 1-week history of a progressive headache that had acutely worsened over the preceding 24 h, accompanied by nausea and emesis. A neurological examination showed impaired orientation, calculation and memory. The pupils measured 3 mm bilaterally, limb strength was Medical Research Council grade 5- and no pathological reflexes were elicited (6). Non-contrast head computed tomography (CT) scans taken in an external hospital revealed a right frontal space-occupying lesion, with intracranial neoplasm and stroke considered in the initial differential.
On hospital day 2, contrast-enhanced 3T magnetic resonance imaging (MRI) demonstrated a 7.2×5.2-cm right frontal mass with intralesional hemorrhage and mass effect displacing the anterior and middle cerebral arteries (Fig. 1). CT angiography additionally suggested anterior skull-base involvement with adjacent dural contact (Fig. 2). A working diagnosis of a tumor-related stroke was considered; oligodendroglioma and meningioma were included in the differential.
On hospital day 5, after exclusion of surgical contraindications, the patient underwent a craniotomy for tumor resection. Intraoperatively, a solid, firm, hypervascular mass without a discrete capsule was identified with invasion of the anterior skull-base dura. Fluorescein sodium aided delineation of the tumor-brain interface, and a gross total resection was achieved. The cut surface was soft and gelatinous. Dural defects were repaired with artificial dura. Postoperatively, the patient was transferred to the intensive care unit for ventilatory support.
At 24 h post-surgery, the patient was somnolent with a Glasgow Coma Scale score of E3V5M6 and proximal limb strength of 5- (6,7). Follow-up CT demonstrated a hematoma with progressive fluid accumulation within the resection cavity when compared with immediate postoperative imaging. By postoperative day 3, after discontinuation of therapeutic hypothermia, the patient's temperature peaked at 37.5°C and the clinical status stabilized, permitting transfer to the general ward.
On postoperative day 5, a high-grade fever and incisional discharge prompted a lumbar puncture, which showed elevated opening pressure and marked cerebrospinal-fluid pleocytosis. Culture of the fluid grew methicillin-resistant Staphylococcus aureus, confirming postoperative bacterial meningitis. The patient received intravenous meropenem (1 g every 8 h) and vancomycin (1 g every 12 h); defervescence and wound resolution were achieved after 6 days.
On postoperative day 16, histopathological analysis established a diagnosis of EMC. Tissue samples were fixed in 4% Paraformaldehyde Fix Solution (cat. no. P0099-500 ml; Beyotime Biotechnology) at room temperature for 24 h, followed by routine dehydration and embedding in paraffin. Sections were cut at a thickness of 3 µm and mounted on slides. To minimize non-specific background, sections were blocked with 3% bovine serum albumin in PBS for 1 h at room temperature. The Roche BenchMark automated staining platform was used according to the manufacturer's instructions, with the following ready-to-use primary antibodies, incubated at room temperature for 32 min: p53 (cat. no. 61209507; Beijing Zhongshan Jinqiao Biotechnology Co., Ltd.), vimentin (cat. no. ZM-0260; Beijing Zhongshan Jinqiao Biotechnology Co., Ltd.), Ki-67 (Gene Tech Co., Ltd.; cat. no. GT209407), CK(Pan) (GeneTech Co., Ltd.; cat. no. GM351507), INI1 (Beijing Zhongshan Jinqiao Biotechnology Co., Ltd.; cat. no. ZA-0696), S100 (Beijing Zhongshan Jinqiao Biotechnology Co., Ltd.; cat. no. ZA-0225), Desmin (GeneTech Co., Ltd.; cat. no. GT225207), EMA (Thermo Fisher Scientific, Inc.; cat. no. 24 h-0095), GFAP (cat. no. ZM-0118; Beijing Zhongshan Jinqiao Biotechnology Co., Ltd.), synaptophysin (cat. no. ZM-0246; Beijing Zhongshan Jinqiao Biotechnology Co., Ltd.), CD34 (GeneTech Co., Ltd.; cat. no. GM716507), IDH1 (Beijing Zhongshan Jinqiao Biotechnology Co., Ltd.; cat. no. ZM-0447), SOX10 (cat. no. ZA-0624; Beijing Zhongshan Jinqiao Biotechnology Co., Ltd.), STAT6 (cat. no. ZA-0647; Beijing Zhongshan Jinqiao Biotechnology Co., Ltd.), NKX2.2 (cat. no. ZA-0655; Beijing Zhongshan Jinqiao Biotechnology Co., Ltd.) and SMA (cat. no. Kit-0006/MAB-0890; Abcam). Immunohistochemical analysis showed the following results: S-100(−), integrase interactor 1 (INI1)(−), cytokeratin (CK)(−), smooth muscle actin (SMA)(−), desmin(−), CD34(−), STAT6(−), homeobox protein Nkx-2.2 (NKX2.2)(−), transcription factor SOX-10 (SOX10)(−), synaptophysin(−), epithelial membrane antigen (EMA)(−), glial fibrillary acidic protein (GFAP)(−), diffuse vimentin(+), p53(+, 60%), isocitrate dehydrogenase 1 (IDH-1)(−) and a Ki-67 labeling index of 80% (Fig. 3, Fig. 4, Fig. 5). NR4A3 fluorescence in situ hybridization (FISH) was recommended to confirm the molecular subtype, but was declined due to financial constraints and concerns about invasive testing.
After discontinuation of intensive antimicrobial therapy, the patient remained afebrile. Following a 23-day hospitalization period, the patient was discharged with baseline neurological function restored. Discharge medications included 30 mg oral idebenone three times daily and 0.2 g oral citicoline sodium three times daily; neurosurgical follow-up was scheduled for surveillance.
Approximately 1 month postoperatively, the patient was readmitted for adjuvant radiotherapy (RT). Baseline hematological parameters were within reference ranges: Red blood cells, 4.71×10¹2/l (normal range, 4.0–5.5×10¹2/l); hemoglobin, 142 g/l (normal range, 130–175 g/l); platelets, 285×109/l (normal range, 125–350×109/l); and leukocytes, 8.36×109/l (normal range, 4.0–10.0×109/l).
Simulation CT (3-mm slice thickness) was acquired with the patient in a supine position and immobilized in a thermoplastic mask. The tumor bed and contrast-enhancing region were contoured as the gross tumor volume with a 3-mm margin to generate the planning gross tumor volume (59.40 Gy in 33 fractions). Preoperative edema and enhancing dura defined the clinical target volume; a further 3-mm margin produced the planning target volume (PTV) (66 Gy in 33 fractions). Treatment-planning verification confirmed ≥95% isodose coverage of the PTV with organ-at-risk doses within institutional constraints.
Hematological indices were monitored throughout RT and showed a mild downward trend consistent with non-actionable myelosuppression (week 7: hemoglobin, 140 g/l; platelets, 238×109/l; and leukocytes, 4.83×109/l). No laboratory threshold for intervention was reached.
During the course of radiotherapy, adjunctive osmotherapy with intravenous 20% mannitol (125 ml every 8 h) was administered to manage perilesional edema. The patient's Eastern Cooperative Oncology Group performance status remained at 1 (8), and no radiation-induced dermatitis or neurological toxicity was observed.
Post-RT MRI demonstrated substantial resolution of the postoperative hematoma and associated fluid collections (Fig. 6). Given the high-risk pathological features (INI1 loss and Ki-67 at 80%) and the limited responsiveness of EMC to conventional chemotherapy reported in the literature, a multidisciplinary team concluded that adjuvant chemotherapy would provide no clear clinical benefit; systemic therapy was therefore not pursued, and the patient was discharged. The patient's long-term prognosis remains uncertain, and imaging surveillance is planned at 3- to 6-month intervals for 2 years and annually thereafter.
EMC is a rare soft-tissue sarcoma, accounting for 2.5–3% of all soft-tissue sarcomas. EMC is classified by the World Health Organization as a ‘mesenchymal tumor of uncertain differentiation’ (9). Pathologically, EMC exhibits a multinodular architecture with a mucin-rich matrix and chondroid cells showing malignant cytological features (10). Although initially regarded as a low-grade neoplasm, subsequent studies have shown a notable propensity for local recurrence and distant metastasis (11,12), particularly to the lungs (13). Intracranial EMC is hypothesized to arise from embryonic remnants within cranial bones or from pluripotent mesenchymal cells in the dura mater (14). EMC most often affects middle-aged men and typically presents as a slowly enlarging, painless, deep-seated mass in the proximal limbs (9). By contrast, intracranial lesions usually have an insidious onset with non-specific symptoms, frequently delaying the diagnosis.
The present study reports a rare case of intracranial EMC in a 17-year-old male patient; to the best of our knowledge, only 16 comparable cases have been reported worldwide (Table I). The present case adds to the spectrum of primary intracranial EMC, a review of which is summarized in Table I (5,14–28). The current patient presented with an acute headache, in contrast to the classically indolent course of EMC. Imaging disclosed a large right frontal mass (7.2×5.2 cm) with intralesional hemorrhage and invasion of the anterior cranial-fossa dura. Notably, the supratentorial location challenges the conventional expectation that intracranial EMCs predominantly arise in the posterior cranial fossa; fewer than 5 supratentorial cases have been documented (17,28). Postoperative histopathology confirmed EMC with loss of INI1 expression and a high Ki-67 labeling index (80%), indicating an aggressive phenotype. The distinctiveness of this case lies in its adolescent onset (typical onset, 50–60 years), right frontal location and high proliferative activity with INI1 loss. The postoperative course was further complicated by bacterial meningitis, adding to the management complexity.
The present case underscores the pronounced clinical and pathological heterogeneity of EMC. An accurate diagnosis requires an integrated, multimodal assessment. Immunohistochemically, the tumor showed diffuse vimentin positivity, consistent with mesenchymal differentiation, and was negative for S-100, aligning with the frequently low rate of S-100 expression reported in intracranial EMCs (28,29) (Table II). The immunohistochemical profile of the present case aligns with reported intracranial EMCs, with a detailed comparison provided in Table II (5,16–20,22,23,25–28).
Histopathological evaluation of hematoxylin and eosin (H&E)-stained sections revealed a hypercellular neoplasm with a multinodular architecture within an abundant myxoid stroma. Tumor cells were predominantly eosinophilic, ranging from epithelioid to plump spindle forms, arranged in cords, nests and reticular patterns. There was marked nuclear atypia, elevated mitotic activity and foci of hemorrhagic change. A panel of negative immunomarkers supported systematic exclusion of mimics: GFAP and SOX10 negativity argued against gliomas and schwannomas (30); CK and EMA negativity argued against epithelial tumors and meningiomas (31); synaptophysin, desmin and SMA negativity argued against neuroendocrine and myogenic neoplasms (32); and the absence of CD34 and STAT6 expression did not support a pericytic/solitary fibrous tumor lineage (33). Furthermore, while CD99 is a valuable marker in the differential diagnosis of small round cell tumors, particularly for excluding Ewing sarcoma, it was not performed in the present retrospective case as the comprehensive diagnostic workup was already achieved through the extensive immunohistochemical panel and characteristic morphological features. However, based on its established role in differential diagnosis, its inclusion is recommended in a routine panel. The hemorrhagic transformation may reflect aberrant vascular proliferation, concordant with the high Ki-67 index (up to 80%) and strong p53 immunoreactivity (>60%), collectively suggesting activated angiogenesis-related pathways.
Loss of INI1 expression is infrequently observed in conventional intracranial EMCs (reported in <10% of cases) but has been described in high-grade morphological variants with pronounced atypia and brisk mitotic activity (34). The combination of characteristic H&E features, multinodular myxoid stroma with corded growth and the specific immunoprofile is strongly supportive of EMC. Diffuse vimentin positivity with absent synaptophysin/EMA expression effectively excludes malignant rhabdoid tumors, while CK negativity argues against chordoma. In addition, negative NKX2.2 and IDH-1 staining disfavors Ewing's sarcoma and IDH-mutant gliomas, respectively (35).
The immunoprofile in the present case, namely strong vimentin positivity, S-100 negativity, synaptophysin negativity and the absence of lineage-defining markers, closely mirrors reported intracranial EMCs, including those associated with the TAF15-NR4A3 fusion subtype; in the absence of molecular confirmation, however, this remains inferential. This fusion subtype accounts for ~20% of EMCs and has been linked to aggressive clinical behavior and resistance to pazopanib (36). Molecular confirmation remains rare in the literature, with definitive subtyping reported in only 1 of 16 documented intracranial cases (5). Thus, while the diagnosis is well supported by histomorphology and immunohistochemistry, definitive classification would require genetic confirmation, which was not performed in the present case (5).
A definitive diagnosis typically requires molecular detection of NR4A3 rearrangements, most commonly confirmation of the EWSR1-NR4A3 fusion (37). The patient's refusal to undergo NR4A3 testing imposed two critical limitations: First, the TAF15-NR4A3 subtype, which confers relative resistance to pazopanib, could not be distinguished from the EWSR1-NR4A3 subtype, precluding accurate molecular subtyping; and second, prognostication may be less reliable, as patients with TAF15 fusions have significantly lower 5-year survival rates than those with EWSR1 fusions.
Given the high-risk pathological features, management raised three major challenges. First, postoperative bacterial meningitis, reflected by a cerebrospinal-fluid white-cell count of 836×106/l, may necessitate delaying RT, thereby increasing the risk of recurrence. Second, invasion of the skull-base dura complicates margin assessment and favors the judicious use of neuronavigation. Third, in this high-risk context, systemic therapies such as temozolomide or pazopanib merit consideration; temozolomide penetrates the blood-brain barrier effectively, whereas pazopanib may be more suitable for patients lacking the TAF15 fusion. At the 3-month postoperative follow-up, no recurrence was detected in the present case. Nonetheless, vigilant long-term surveillance is warranted, as distant metastases often emerge years after surgery. Proton-beam therapy may offer dosimetric advantages over conventional RT, but the optimal strategy requires further evaluation (37).
Imaging findings are pivotal for differential diagnosis and require synthesis across modalities. CT typically shows a well-circumscribed hypodense mass, with calcification in ~12.5% of cases (5). Contrast-enhanced CT often demonstrates mild or absent enhancement (2). MRI provides greater diagnostic resolution: Lesions are commonly iso- to hypointense on T1-weighted sequences, with hemorrhagic foci appearing hyperintense (38). On T2-weighted imaging, they are frequently markedly hyperintense with hypointense fibrous septa, often producing a multiloculated cystic appearance (2,39). Post-contrast enhancement is typically septal, ring-like or lobulated; ~10% of cases show minimal or no enhancement (38). The MRI characteristics in the present case align closely with these descriptors (Table III). The imaging findings in the present case are consistent with the spectrum of MRI features summarized in Table III (5,14–28).
Key differential diagnoses of EMC include chondroid meningioma, which often exhibits calcification and a characteristic dural-tail sign (1), ependymoma, which commonly arises in the fourth ventricle and may disseminate along cerebrospinal-fluid pathways (38), cavernous hemangioma, which shows a ‘popcorn-like’ mixed T2 signal with a surrounding hemosiderin rim, and metastatic tumors, which are frequently multiple and typically associated with substantial vasogenic edema (5).
For clinical practice, heightened vigilance is warranted when encountering intracranial mucin-rich tumors with hemorrhage and skull-base invasion in adolescents. A routine immunohistochemical panel should include vimentin, S-100, CD99 and INI1, with strong consideration of NR4A3 assessment. Molecular confirmation is recommended using FISH or RNA sequencing.
Therapeutically, meticulous control of surgical boundaries at the skull base and timely initiation of RT, at a recommended dose of 50–54 Gy, are crucial. Systemic options may include temozolomide or pazopanib. For patients with a relevant family history, genetic screening should be considered.
The present study has several limitations, including the absence of NR4A3 fusion testing, a short postoperative follow-up of only 3 months and the lack of mechanistic validation. Given that EMC can metastasize years after surgery, long-term standardized follow-up is essential. Future work should prioritize establishing a dedicated registry for adolescent EMCs and investigating age-specific mechanisms, including functional interrogation of the LSM14A-NR4A3 fusion, the consequences of INI1 loss and strategies for combination immunotherapy.
Not applicable.
Funding: No funding was received.
The data generated in the present study may be requested from the corresponding author.
HW designed and conducted the study, collected the case report data, and analyzed and interpreted the data. HZ acquired the pathological data. FW contributed to the analysis and revision of the discussion section and prepared the pathological images. HW wrote the manuscript, and all authors analyzed the results and revised the manuscript. HZ made significant contributions to the conception and design of the study. HW, HZ, and FW confirm the authenticity of all the raw data. All authors have read and approved the final version of the manuscript.
This study was approved by the Ethics Committee of Yantai Yuhuangding Hospital (Yantai, China; approval no. 2025-561).
Written informed consent was obtained from the patient for the publication of any potentially identifiable images or data included in this article.
The authors declare that they have no competing interests.
During the preparation of this work, AI tools were used to improve the readability and language of the manuscript or to generate images, and subsequently, the authors revised and edited the content produced by the AI tools as necessary, taking full responsibility for the ultimate content of the present manuscript.
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extraskeletal myxoid chondrosarcoma |
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magnetic resonance imaging |
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radiotherapy |
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