Silencing of CXCR4 by RNA interference inhibits cell growth and metastasis in human renal cancer cells

Introduction

Metastatic renal cell carcinoma (RCC) is associated with a poor prognosis, with a median survival of 8 months (1). At the time RCC are identified, in most cases the tumors have already progressed and are generally resistant to chemotherapy and radiotherapy. Although some patients respond to immunotherapy, many cases are resistant to interleukin-2 or interferon-α (IFN-α) therapy and the overall response rate is less than 20% (2). The factors leading to this lack of response remain under investigation. Therefore, it is necessary to find more effective, universal treatments for this disease. Molecular targeting of abnormal signal transduction pathways is promising for the treatment of many diseases. Many studies have suggested that chemokine played a significant role, not only in immune and inflammatory responses, but also in malignant cell growth and progression (3,4). The CXCR4 chemokine receptor belongs to the group of seven transmembrane G protein-coupled receptors (GPCRs) which are ubiquitously expressed in various normal cells and tissues, including neurons, lymphatic tissues, microglia and hematopoietic cells (3,5). CXCR4 and its ligand, stromal cell-derived factor-1 (SDF-1), currently termed CXCL12, are believed to play significant roles in tumorigenesis and metastasis (6). Based on these studies, downregulation of CXCR4 may provide a therapeutic strategy for inhibiting tumors metastasis and for enhancing the survival of patients with RCC. AMD3100 is a specific CXCR4 antagonist that is used in the clinic to improve the success of stem cell transplantation in cancer patients (7). However, drug resistance may limit the use of AMD3100 in clinical applications (8). In another clinical study, two patients treated with 40 and 160 mg/kg/h AMD3100 had unexpected premature ventricular contractions, which resulted in the discontinuation of the drug (9). Surprisingly, AMD3100 reduced growth of lymphomas in vivo when administered three times weekly, but enhanced tumor growth after continuous drug infusions (6,10). However, recently the advent of RNAi-directed ‘knock-down’ has sparked a revolution in somatic cell genetics, allowing for inexpensive and rapid analysis of gene function in mammals, and might be exploited for gene therapy in the future (11).

Our previous experiment has confirmed that the RCC A-498 cell line, which expresses high level of CXCR4, was associated with increased invasiveness (12). In the present study, we employed RNAi to inhibit CXCR4 expression in A-498 cells and investigated the effect of CXCR4 suppression on the proliferation and apoptosis of those cells in vitro.

Materials and methods

Cell line and culture

A-498 cells (ATCC, Manassas, VA, USA), a human renal cell carcinoma cell line, were grown at 37°C in a humidified atmosphere of 95% air and 5% CO2 in ATCC-formulated Eagle’s minimum essential medium (EMEM, cat. no. 30-2003, ATCC) supplemented with 10% fetal bovine serum (Hyclone Corp., USA).

Construction of the CXCR4 specific short hairpin RNA (shRNA) expression vector and stable transfection

Double chains of oligonucleotide with complementary sequences that can code short hairpin RNA (shRNA) were obtained from GenePharma Co., Ltd. (Shanghai, China). The siRNA recognized nucleotides 525–543 of CXCR4 mRNA (GAAGCAT GACGGACAAGTA) of the transcript according to the NCBI database (GeneID7852). CXCR4-shDNA oligos are listed below: 5′-CACCGAAGCATGACGGACAAGTATTCAAGA GATACTTGTCCGTCATGCTTCTTTTTTTG-3′ (sense) and 5′-GATCCAAAAAAGAAGCATGACGGACAAGTATCTC TTGAATACTTGTCCGTCATGCTTC-3′ (antisense). The target sequence of the negative control group named shRNA-control was 5′-GTTCTCCGAACGTGTCACGT-3′ (sense) and 5′-ACGTGACACGTTCGGAGAAT-3′ (antisense), which has no homology with that of human or mice. The hairpin loop region was annealed with its complementary strand and was cloned into the pGPU6/GFP/Neo plasmid vector (GenePharma Co., Ltd.) carrying a green fluorescent protein (GFP) reporter gene and genes for ampicillin and neomycin resistance. The shRNA expression vectors were transfected into A-498 cells using the Lipofectamine 2000 transfection reagent (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s instructions. G418 was added into the culture medium (500 mg/ml, Gibco Bio-Cult) after 48 h. Stable G418-resistant clones were obtained after 4 weeks. The expanded cells were then used for subsequent studies.

RNA isolation and reverse transcription polymerase chain reaction (PCR)

Total RNA was isolated from cells by using TRIzol Reagent (Invitrogen). cDNA synthesis was performed using reverse transcription reagents (Promega, Madison, WI, USA). Real-time PCR was performed using SYBR-Green I Mix (ABI, Foster City, CA, USA) and an ABI Prism 7700 Sequence Detection system (ABI) according to the manufacturer’s instructions. The primer sequences for the genes and expected product sizes were as follows: 5′-GGAAAAGAGG GGAGGAGAG-3′ (sense) and 5′-CACTTCCAATTCAG CAAGCA-3′ (antisense) for CXCR4, 5′-ACCACCATGAGA AGGCTGG-3′ (sense) and 5′-CTCAGTGTAGCCCAGGA TGC-3′ (antisense) for GAPDH.

Western blotting

Stable transfected A-498 cells were lysed with a denaturing SDS-PAGE sample buffer using standard methods, and the resulting lysates were cleared by centrifugation. Proteins were transferred onto a nitrocellulose membrane, blocked with Tris-buffered saline plus 0.1% Tween-20 (TTBS) containing 5% non-fat milk for 2 h. The membrane was incubated overnight with the rabbit anti-human primary polyclonal antibody against CXCR4 (Abcam, USA) at 1:1000 dilution at 4°C, then washed and incubated with the HRP-conjugated goat anti-rabbit IgG (Pierce, Rockford, IL, USA) at 1:2000 for 1 h at 37.0°C. Actin was probed using a rabbit monoclonal antibody against human protein and an anti-rabbit IgG as secondary antibody (Santa Cruz Biotechnology). Finally, the bands were visualized by chemiluminescence using a chemiluminescence kit (Invitrogen) and the specific bands were recorded on X-ray film. BandScan 5.0 software was used for gray scale scan to evaluate the relative value of protein expression.

Cell proliferation assay

Cells in the log-growth phase were harvested, suspended at a density of ~1×104 cells/well. After 24 h of culture, 20 μl MTT (5 mg/ml, Sigma) was added to each well. The plates were then incubated at 37°C for 4 h. Then culture medium was removed and 150 μl of DMSO (Sigma) was added and thoroughly mixed for 10 min. Absorbance of each well was measured at a wavelength of 490 nm and the numbers of surviving cells were calculated.

Invasion and migration assay

The invasion assay was performed using an 8 μm pore size transwell chamber in 24-well plates (Corning Costar, Cambridge, MA, USA). A-498 cells (1.0×105) in 500 μl of serum-free MEM medium were loaded into the top chamber with fetal bovine serum placed in the bottom chamber as a chemoattractant. After further incubation at 37°C for 10 h, the cells on the top of the filters were removed with cotton swabs. The cells on the lower surface of the filters were fixed in 4% paraformaldehyde and stained with 0.1% crystal violet. The crystal violet was removed and the cells were washed three times with PBS, and then the remaining crystal violet that had stained the migrated cells was eluted with one wash with 33% acetic acid. The OD540 nm of the eluted crystal violet was determined as a measure of migrated cells. The cell migration assay was performed in a similar mode, except that cells were seeded into the uncoated filter and incubated for 24 h.

Analysis of apoptosis by flow cytometry

Apoptosis was determined with an Annexin V-FITC/propidium iodide Apoptosis Detection kit (Bipec Biopharma Corp., Cambridge, MA) according to the manufacturer’s protocol. The cells were washed with PBS and subsequently incubated for 5 min at room temperature in the dark in 500 μl of 1X binding buffer containing 5 μl of Annexin V-FITC and 10 μl of propidium iodide. Afterwards, apoptosis was analyzed by flow cytometry (FCM).

Statistical analysis

All measurements were carried out with the same instrument under the same experimental condition. Data are expressed as means ± standard deviation (SD). All data were analyzed statistically by one-way analysis of variance (ANOVA) and P<0.05 was considered significant.

Results

Assessment of the effect of CXCR4 siRNA in A-498 cells

After the plasmid vector with green fluorescent protein (GFP) was transfected into the cells using Lipofectamine 2000 transfection reagent, it produced a green fluorescent wave. Microscopic analysis revealed that CXCR4 RNAi induced morphological changes in A-498 cells characterized by irregular morphology, less dense structure and were smaller in volume compared with untransfected cells (Fig. 1A). The fluorescent microphoto indicated that transfection was successful (Fig. 1B).

Figure 1 Light and fluorescent micrographs of cells transfected using plasmid vector expressing green fluorescent protein (magnification, ×200). (A) Light microscopy image; (B) fluorescent microscopy image. High intensity of fluorescence indicated a high efficiency of transfection.

RNAi inhibits CXCR4 mRNA expression in A-498 cells

To study the silencing effect of CXCR4 shRNA, CXCR4 expression was evaluated by RT-PCR. As shown in Fig. 2, CXCR4 mRNA expression in CXCR4-shRNA transfected A-498 cells was reduced 78.9%, compared to shRNA-control, vector-control and blank-control cells (P<0.01), indicating that the corresponding mRNA sequence for CXCR4 RNAi was specific to the intended target.

Figure 2 Expression of CXCR4 mRNA in A-498 cells. The graph represents data from 6 independent experiments illustrating that CXCR4-shRNA reduces CXCR4 mRNA in A-498 cells compared to shRNA-control, vector-control, or blank-control. *Significant difference from control groups, P<0.01.

RNAi inhibits CXCR4 protein expression in A-498 cells

CXCR4-shRNA resulted in a significant decrease in CXCR4 protein levels (11.67±3.09% normalized to β-actin) (Fig. 3) compared with shRNA-control cells (55.50±3.72% normalized to β-actin), vector-control (53.44±5.65% normalized to β-actin) and blank-control cells (50.63±8.17% normalized to β-actin) (P<0.01), suggesting that CXCR4-shRNA strongly inhibits CXCR4 expression.

Figure 3 Expression of CXCR4 protein in A-498 cells by western blot analysis. The image is from 5 independent experiments, which illustrates that CXCR4-shRNA reduces CXCR4 mRNA in A-498 cells compared to shRNA-control, vector-control, or blank-control. Lane 1, CXCR4-shRNA cells; lane 2, shRNA-control cells; lane 3, vector-control cells; lane 4, blank-control cells. *Significant difference from control groups, P<0.01.

CXCR4 shRNA inhibits A-498 cell proliferation

The growth rate of cells after transfection was examined using MTT assay for 6 days. As shown in Fig. 4, CXCR4-shRNA reduced the growth of A-498 cells significantly as compared to shRNA, vector, and blank-controls (P<0.01). Cell proliferation was inhibited notably in a time-dependent manner for CXCR4-shRNA cells and the highest inhibitory rate was 31.33±1.78% on Day 3. There was no difference in inhibition among shRNA, empty vector, or blank-controls (P>0.05).

Figure 4 Cell proliferation detected by MTT. Cell proliferation was inhibited notably in a time-dependent manner. The data at each time point was averaged values from 6 replicates. *Significant difference from control groups on the same day, P<0.01.

CXCR4 shRNA inhibits A-498 cell invasion and migration

We evaluated whether suppression of CXCR4 altered the motility of A-498 cells across transwell polycarbonate membranes. As shown in Fig. 5A, compared with shRNA, vector, and blank controls, the cell invasiveness and migration of CXCR4-shRNA cells were reduced by 51.28±1.64% and 43.73±2.75%, respectively (P<0.01). In contrast, there were no differences observed between shRNA, vector, and blank controls (P>0.05). Fewer CXCR4-shRNA-transfected cells than shRNA, vector, and blank control-tansfected cells were observed when the polycarbonate filters were stained with crystal violet (Fig. 5B). Our data suggested that silencing by CXCR4-shRNA can inhibit the invasive potential of A-498 cells.

Figure 5 Invasion and migration assay. (A) Compared with the shRNA-control, vector-control, and blank-control cells, the cell invasiveness and migration of CXCR4-shRNA cells were reduced. (B) The polycarbonate filters were stained with crystal violet and viewed with a light microscope (magnification, ×100). These experiments were performed 6 times. *Significant difference from control groups in white bars, P<0.01; #Significant difference from control groups in black bars, P<0.01.

Effect of CXCR4 shRNA on cell apoptosis

The cell apoptosis assay was measured by FCM. Apoptosis rate was 32.76±0.56% in CXCR4 shRNA cells, 11.72±0.70% in shRNA-control cells, 10.99±0.50% in vector-control cells, and 12.83±0.90% in blank-control cells. As shown in Table I, compared with control or untreated cells, more necrotic cells were detected in the cells treated with plasmid-mediated CXCR4 shRNA (P<0.01).

Table I Effect of CXCR4 gene depletion on A-498 cell apoptosis.

Table I

Effect of CXCR4 gene depletion on A-498 cell apoptosis.

	Apoptosis rate (%)
Groups	Early phase	Late phase	Total
Negative-control	3.65±0.21	8.06±0.48	11.72±0.47
Vector-control	3.58±0.16	7.41±0.34	10.99±0.38
Blank-control	4.53±0.32	8.28±0.58	12.83±0.69
CXCR4 shRNA	17.74±0.31a	15.01±0.26a	32.76±0.38a

a P<0.05 vs. control groups; n=6; mean ± SD.

Discussion

Chemokines are 8 to 10-kDa cytokines that are classified into four groups (CXC, CC, C and CX3C) based on the position of the first two cysteines (13). CXCR4, a GPCR, is constitutively expressed in a wide range of normal tissues and its expression is enhanced in many solid tumors (14). Quantitative analysis of CXCR4 gene expression has been proposed as a prognostic marker and a predictor of potential metastasis in colorectal cancer (15), breast cancer (16), gastric cancer (17), acute myelogenous leukemia (18), osteosarcoma (19) and prostate cancer (20). Zagzag et al found that CXCR4 mRNA is upregulated in kidney cancer samples compared to adjacent normal tissue indicating a closely relation between CXCR4 and tumor cell dissemination and invasion (21). In addition, it was found that strong CXCR4 expression in renal cell carcinoma is associated with advanced T status (22). However, few reports have investigated the effects of siRNA directed inhibition of CXCR4 in RCC. Accordingly, to gain more insight into the effect of CXCR4 in A-498 cells, we selectively knocked down CXCR4 expression using RNAi and observed the subsequent effects in A-498 cells.

In this study, we successfully constructed a plasmid expression vector that contained a CXCR4 short hairpin RNA expression cassette. Our study showed that in stable transfected A-498 cells, the shRNA was introduced into the cytoplasm, forming an RNA-induced silencing complex with other nucleus enzymes. We found that CXCR4 mRNA and protein production were downregulated. In contrast, CXCR4 expression was unchanged in the control groups, which confirmed that high specific gene suppression by RNAi was achieved.

We previously reported that overexpression of CXCR4 in A-498 cells is associated with increased Matrigel matrix invasion (12). In this study we observed that RNAi-mediated silencing of CXCR4 decreased cell proliferation by MTT and Matrigel invasion assays. Our results suggest that CXCR4 is a positive regulator in the growth of A-498 cells and thus supports A-498 cell proliferation. Previous studies have found that CXCR4 nuclear localization may be responsible for these metastatic changes (12,23). The nuclear localization of CXCR4 is comparable to the mechanism exhibited by the epidermal growth factor receptor (EGFR), another membrane receptor, which translocates to the nucleus after binding to epidermal growth factor, and increases the promoter region of the cyclin D1 gene transcription (24). Cyclin D1 is a regulatory kinase critical for progression through the G1 to S phase transition of the cell cycle and is involved in cancer cell growth (25), and thus nuclear translocation of EGFR leads to increased cell proliferation.

Increased resistance to apoptosis is a common characteristic of cancer cells, and alterations in the apoptotic pathway contribute to tumorigenesis and chemotherapy resistance in carcinoma cells. In this study, we also observed that A-498 RCC cells treated with CXCR4 shRNA had an increased apoptotic rate. Previous studies indicated that suppression of CXCR4 reduces the induction of apoptosis in other types of cancer cells such as neuroectodermal tumors (26), antagonists medulloblastoma (27), and breast cancer cell lines in vitro (28). Furthermore, another report showed that crosstalk between CXCR4 and integrin signaling increased adhesion of small cell lung cancer (SCLC) cells to stromal cells, which protected these cells from chemotherapy-induced apoptosis conferring chemoresistance (29). CXCR4 blockade reduced adhesion and survival signals from the tumor microenvironment to SCLC cells and increased sensitivity to chemotherapy induced apoptosis (30). As an anti-apoptotic factor, Bcl-2 protects cells from apoptosis by regulating mitochondria membrane potential and preventing mitochondrial cytochrome c release (31). Carmen et al reported that Bcl-2 activity decreases after addition of CXCR4 antagonists, leading to A-498 cell death through a mitochondrial apoptotic pathway (32). After binding to CXCR4, SDF-1 causes mobilization of calcium, decrease of cyclic AMP within the cells, and activates multiple signal transduction pathways such as PI3K/Akt/eNOS pathway, which can enhance cell proliferation, migration, survival, and angiogenesis signals by inducing eNOS activity (33). It has also been reported that a number of Akt downstream target molecules such as nitric oxide (34), and Bcl-2 family members including Bcl-xL, Bcl-w, Bad and Bax (35) are involved in regulating tumor cell apoptosis (36). In summary, these findings provide evidence that downregulation of CXCR4 expression has an apoptotic effect in A-498 cells and this mechanism could lead to an anti-tumor effect.

In conclusion, our present study shows that silencing of CXCR4 using RNA interference could effectively inhibit proliferation, invasion and metastasis in A-498 RCC cells. Traditionally, the standard treatment for patients with RCC is surgical resection in the case of localized disease (37). However, for metastatic RCC, gene therapy based on RNA interference-mediated silencing of CXCR4 might be a promising and innovative anticancer therapy. In addition, more studies are required to assess the pharmacokinetics and improve the tissue specific targeting of certain genes with siRNA.

Acknowledgements

This study was supported by the Science and Technology key project of basic research of Shanghai, China (no. 10JC1417800).

References