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Mannotriose‑containing extract of Streptomyces sennicomposti GMY01 induces the apoptosis of HeLa cells and exhibits binding affinity with BCL‑2 and MCL‑1 proteins

  • Authors:
    • Metamalik Pasala
    • Ema Damayanti
    • Jaka Widada
    • Woro Rukmi Pratiwi
    • Mustofa Mustofa
  • View Affiliations / Copyright

    Affiliations: Department of of Pharmacology and Therapy, Public Health and Nursing, Universitas Gadjah Mada, Yogyakarta 55281, Indonesia, Research Center for Food Technology and Processing, National Research and Innovation Agency (BRIN), Gunungkidul, Yogyakarta 55861, Indonesia, Department of Agricultural Microbiology, Faculty of Agriculture, Universitas Gadjah Mada, Yogyakarta 55281, Indonesia
    Copyright: © Pasala et al. This is an open access article distributed under the terms of Creative Commons Attribution License [CC BY 4.0].
  • Article Number: 84
    |
    Published online on: July 4, 2025
       https://doi.org/10.3892/wasj.2025.372
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Abstract

Streptomyces sennicomposti (S. sennicomposti) GMY01 is known to exhibit anticancer activity and mannotriose has been identified as an active compound. The present study aimed to determine the anticancer activity of a mannotriose‑containing fraction of GMY01 on cervical cancer and apoptosis regulatory proteins (BCL‑2 and MCL‑1). For this purpose, an in vitro assay was conducted using HeLa cells as a cancer cell line and C2C12 cells as a normal cell line. In addition, in silico molecular docking was performed to determine the binding of mannotriose of S. sennicomposti GMY01 with BCL‑2 and MCL‑1. Methanol extract (ME) containing mannotriose was extracted from the cell‑free supernatant of GMY01 fermentation culture and the n‑hexane‑free methanol fraction (HMF) was obtained by the fractionation of the methanol extract using n‑hexane solvent. The results revealed that the IC50 value of the HMF was lower than that of the ME; however, the difference was not statistically significant (78.82 compared to 93.75 µg/ml; P=0.843). The selectivity index of HMF was higher than ME (117.04 compared to 6.23). Moreover, the apoptotic index of the HMF was lower than that of the ME; however, the difference was not statistically significant (2.32±0.48 compared to 2.33±0.44 at 0.5xIC50 levels, P=0.99; and 2.99±0.27 compared to 4.01±0.39 at 1xIC50 levels, P=0.151). In the In silico molecular docking analysis, mannotriose of S. sennicomposti GMY01 was found to bind to BCL‑2 and MCL‑1 (highest affinity: ‑1.10 and ‑1.33 kcal/mol, respectively). On the whole, the present study demonstrates that HMF containing mannotriose exerts a moderate cytotoxic effect and a high selectivity index on HeLa cells and binds to apoptotic regulatory proteins.
View Figures

Figure 1

Flow cytometry plots of: (A)
Methanolic extract 0.5xIC50, (B) methanolic extract
1xIC50, (C) free n-hexane fraction
0.5xIC50, (D) free n-hexane fraction
1xIC50, (E) doxorubicin 1xIC50, (F) culture
medium only. The quadrants are as follows: PI, viable cells; P2,
early apoptotic cells; P3, late apoptotic cells; P4, necrotic
cells.

Figure 2

Comparison of apoptotic index in each
group.

Figure 3

Comparison of the apoptotic phase in
the test and control groups.

Figure 4

wwPDB validation of molecular
structure with PDB-ID: (A) 4IEH, (B) 7LHB, (C) 6O0K, (D) 4LVT, (E)
6OQB, (F) 6FS0.

Figure 5

Visualization in 2D (left) and 3D
(right) of the complex between BCL-2 (4IEH) and (A) IE9 or (B)
mannotriose.

Figure 6

Visualization in 2D (left) and 3D
(right) of the complex between MCL-1 (6FS0) and (A) E4W or (B)
mannotriose.
View References

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Copy and paste a formatted citation
Spandidos Publications style
Pasala M, Damayanti E, Widada J, Pratiwi WR and Mustofa M: Mannotriose‑containing extract of <em>Streptomyces sennicomposti</em> GMY01 induces the apoptosis of HeLa cells and exhibits binding affinity with BCL‑2 and MCL‑1 proteins. World Acad Sci J 7: 84, 2025.
APA
Pasala, M., Damayanti, E., Widada, J., Pratiwi, W.R., & Mustofa, M. (2025). Mannotriose‑containing extract of <em>Streptomyces sennicomposti</em> GMY01 induces the apoptosis of HeLa cells and exhibits binding affinity with BCL‑2 and MCL‑1 proteins. World Academy of Sciences Journal, 7, 84. https://doi.org/10.3892/wasj.2025.372
MLA
Pasala, M., Damayanti, E., Widada, J., Pratiwi, W. R., Mustofa, M."Mannotriose‑containing extract of <em>Streptomyces sennicomposti</em> GMY01 induces the apoptosis of HeLa cells and exhibits binding affinity with BCL‑2 and MCL‑1 proteins". World Academy of Sciences Journal 7.5 (2025): 84.
Chicago
Pasala, M., Damayanti, E., Widada, J., Pratiwi, W. R., Mustofa, M."Mannotriose‑containing extract of <em>Streptomyces sennicomposti</em> GMY01 induces the apoptosis of HeLa cells and exhibits binding affinity with BCL‑2 and MCL‑1 proteins". World Academy of Sciences Journal 7, no. 5 (2025): 84. https://doi.org/10.3892/wasj.2025.372
Copy and paste a formatted citation
x
Spandidos Publications style
Pasala M, Damayanti E, Widada J, Pratiwi WR and Mustofa M: Mannotriose‑containing extract of <em>Streptomyces sennicomposti</em> GMY01 induces the apoptosis of HeLa cells and exhibits binding affinity with BCL‑2 and MCL‑1 proteins. World Acad Sci J 7: 84, 2025.
APA
Pasala, M., Damayanti, E., Widada, J., Pratiwi, W.R., & Mustofa, M. (2025). Mannotriose‑containing extract of <em>Streptomyces sennicomposti</em> GMY01 induces the apoptosis of HeLa cells and exhibits binding affinity with BCL‑2 and MCL‑1 proteins. World Academy of Sciences Journal, 7, 84. https://doi.org/10.3892/wasj.2025.372
MLA
Pasala, M., Damayanti, E., Widada, J., Pratiwi, W. R., Mustofa, M."Mannotriose‑containing extract of <em>Streptomyces sennicomposti</em> GMY01 induces the apoptosis of HeLa cells and exhibits binding affinity with BCL‑2 and MCL‑1 proteins". World Academy of Sciences Journal 7.5 (2025): 84.
Chicago
Pasala, M., Damayanti, E., Widada, J., Pratiwi, W. R., Mustofa, M."Mannotriose‑containing extract of <em>Streptomyces sennicomposti</em> GMY01 induces the apoptosis of HeLa cells and exhibits binding affinity with BCL‑2 and MCL‑1 proteins". World Academy of Sciences Journal 7, no. 5 (2025): 84. https://doi.org/10.3892/wasj.2025.372
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