|
1
|
Yusuf M: Perspectives on cervical cancer:
Insights into screening methodology and challenges. Cancer Screen
Prev. 3:47–55. 2024.
|
|
2
|
Jayathissa P and Rupasinghe DA: Review on
biomarkers for disease diagnosis and disease prevention: Use case
in low and middle-income countries (LMICs). Int J Res Publication
and Reviews Journal homepage: www.ijrpr.com
[Internet]. 2024. www.ijrpr.com.
|
|
3
|
Sayed S, Cherniak W, Lawler M, Tan SY, El
Sadr W, Wolf N, Silkensen S, Brand N, Looi LM, Pai SA, et al:
Improving pathology and laboratory medicine in low-income and
middle-income countries: Roadmap to solutions. Lancet.
391:1939–1952. 2018.PubMed/NCBI View Article : Google Scholar
|
|
4
|
Albano PM, Notarte KI, Macaranas I and
Maralit B: Cross-contamination in molecular diagnostic laboratories
in low- and middle-income countries. Philippine J Pathol. 5:7–11.
2020.
|
|
5
|
Naegele K, Weissbach FH, Leuzinger K,
Gosert R, Bubendorf L and Hirsch HH: Impact of nucleic acid
extraction procedures on human papillomavirus (HPV) detection and
genotyping. J Med Virol. 95(e28583)2023.PubMed/NCBI View Article : Google Scholar
|
|
6
|
Shibata T, Nakagawa M, Coleman H, Owens S,
Greenfield W, Sasagawa T and Robeson MS II: Evaluation of DNA
extraction protocols from liquid-based cytology specimens for
studying cervical microbiota. PLoS One. 16(e0237556)2021.PubMed/NCBI View Article : Google Scholar
|
|
7
|
Donà MG, Benevolo M, Pimpinelli F,
Battista M, Rollo F, Stivali F, Moscarelli A, Giuliani M, Di Carlo
A and Vocaturo A: Comparative evaluation of different DNA
extraction methods for HPV genotyping by linear array and
INNO-LiPA. J Med Virol. 83:1042–1047. 2011.PubMed/NCBI View Article : Google Scholar
|
|
8
|
Dilley K, Pagan F and Chapman B: Methods
for ensuring the highest DNA concentration and yield in future and
retrospective trace DNA extracts. Sci Justice. 61:193–197.
2021.PubMed/NCBI View Article : Google Scholar
|
|
9
|
Vutukuru MR, Sharma DK, Chakraborty I,
Mukhopadhyay D and Mitra N: A rapid and high-yield method for
nucleic acid extraction. Sci Rep. 15(12479)2025.PubMed/NCBI View Article : Google Scholar
|
|
10
|
Van Biesen N, Cools P and Meyers E:
Comparison and optimization of DNA extraction methods for human DNA
from dried blood spot samples. Pediatr Rep. 17(30)2025.PubMed/NCBI View Article : Google Scholar
|
|
11
|
Zamuner FT, Ramos-López A, García-Negrón
A, Purcell-Wiltz A, Cortés-Ortiz A, Cuevas AR, Gosala K, Winkler E,
Sidransky D and Guerrero-Preston R: Evaluation of silica
spin-column and magnetic bead formats for rapid DNA methylation
analysis in clinical and point-of-care settings. Biomed Rep.
21(112)2024.PubMed/NCBI View Article : Google Scholar
|
|
12
|
Trigodet F, Lolans K, Fogarty E, Shaiber
A, Morrison HG, Barreiro L, Jabri B and Eren AM: High molecular
weight DNA extraction strategies for long-read sequencing of
complex metagenomes. Mol Ecol Resour. 22:1786–1802. 2022.PubMed/NCBI View Article : Google Scholar
|
|
13
|
Agreda PM, Beitman GH, Gutierrez EC,
Harris JM, Koch KR, LaViers WD, Leitch SV, Maus CE, McMillian RA,
Nussbaumer WA, et al: Long-term stability of human genomic and
human papillomavirus DNA stored in BD surePath and hologic
preservCyt liquid-based cytology media. J Clin Microbiol.
51:2702–2706. 2013.PubMed/NCBI View Article : Google Scholar
|
|
14
|
Steinau M, Patel SS and Unger ER:
Efficient DNA extraction for HPV genotyping in formalin-fixed,
paraffin-embedded tissues. J Mol Diagn. 13:377–381. 2011.PubMed/NCBI View Article : Google Scholar
|
|
15
|
Padmanaban A, Inche A, Gassmann M and
Salowsky R: High-throughput DNA sample QC using the agilent 2200
tapestation system. J Biomol Tech. 24(S41)2013.
|
|
16
|
Lucena-Aguilar G, Sánchez-López AM,
Barberán-Aceituno C, Carrillo-Ávila JA, López-Guerrero JA and
Aguilar-Quesada R: DNA source selection for downstream applications
based on DNA quality indicators analysis. Biopreserv Biobank.
14:264–270. 2016.PubMed/NCBI View Article : Google Scholar
|
|
17
|
Lu X, Wei Y, Sun J, Xiao B, Zhang X, Li W,
Chen Y, Lin F, Zhang L, Wang Y, et al: A comparative study of three
nucleic acid integrity assay systems. Biopreserv Biobank.
21:624–630. 2023.PubMed/NCBI View Article : Google Scholar
|
|
18
|
Gelman A and Hill J: Data analysis using
regression and multilevel/hierarchical models. New York: Cambridge
University Press; 2007.
|
|
19
|
Bates D, Mächler M, Bolker B and Walker S:
Fitting linear mixed-effects models using lme4. J Stat Softw.
67:1–48. 2015.
|
|
20
|
Kuznetsova A, Brockhoff PB and Christensen
RHB: lmerTest package: Tests in linear mixed effects models. J Stat
Softw. 82:1–26. 2017.
|
|
21
|
Agresti A: Foundations of linear and
generalized linear models. WILEY; 2015.
|
|
22
|
Wang JT, Chang XY, Zhao Q and Zhang YM:
FastBiCmrMLM: A fast and powerful compressed variance component
mixed logistic model for big genomic case-control genome-wide
association study. Brief Bioinform. 25(bbae290)2024.PubMed/NCBI View Article : Google Scholar
|
|
23
|
Noma H and Gosho M: Logistic mixed-effects
model analysis with pseudo-observations for estimating risk ratios
in clustered binary data analysis. Stat Med.
44(e70280)2025.PubMed/NCBI View Article : Google Scholar
|
|
24
|
Chen YF, Lin PW, Chen WH, Yen FY, Yang HS
and Chou CT: Biogas upgrading by pressure swing adsorption with
design of experiments. Processes. 9(1325)2021.
|
|
25
|
McNulty SN, Mann PR, Robinson JA,
Duncavage EJ and Pfeifer JD: Impact of reducing DNA input on
next-generation sequencing library complexity and variant
detection. J Mol Diagn. 22:720–727. 2020.PubMed/NCBI View Article : Google Scholar
|
|
26
|
McKee AM, Spear SF and Pierson TW: The
effect of dilution and the use of a post-extraction nucleic acid
purification column on the accuracy, precision, and inhibition of
environmental DNA samples. Biol Conserv. 183:70–76. 2015.
|
|
27
|
Akahane T, Yamaguchi T, Kato Y, Yokoyama
S, Hamada T, Nishida Y, Higashi M, Nishihara H, Suzuki S, Ueno S
and Tanimoto A: Comprehensive validation of liquid-based cytology
specimens for next-generation sequencing in cancer genome analysis.
PLoS One. 14(e0217724)2019.PubMed/NCBI View Article : Google Scholar
|
|
28
|
Desjardins P and Conklin D: NanoDrop
microvolume quantitation of nucleic acids. J Vis Exp.
22(2565)2010.PubMed/NCBI View
Article : Google Scholar
|
|
29
|
Fiedorová K, Radvanský M, Němcová E,
Grombiříková H, Bosák J, Černochová M, Lexa M, Šmajs D and
Freiberger T: The impact of DNA extraction methods on stool
bacterial and fungal microbiota community recovery. Front
Microbiol. 10(821)2019.PubMed/NCBI View Article : Google Scholar
|
|
30
|
Téblick L, Van Keer S, De Smet A, Van
Damme P, Laeremans M, Cortes AR, Beyers K, Vankerckhoven V,
Matheeussen V, Mandersloot R, et al: Impact of collection volume
and DNA extraction method on the detection of biomarkers and HPV
DNA in first-void urine. Molecules. 26(1989)2021.PubMed/NCBI View Article : Google Scholar
|
|
31
|
Tyson JR, O'Neil NJ, Jain M, Olsen HE,
Hieter P and Snutch TP: MinION-based long-read sequencing and
assembly extends the Caenorhabditis elegans reference genome.
Genome Res. 28:266–274. 2018.PubMed/NCBI View Article : Google Scholar
|
|
32
|
Hiramatsu K, Matsuda C, Masago K, Toriyama
K, Sasaki E, Fujita Y, Haneda M, Ebi H, Shibata N and Hosoda W:
Diagnostic utility of DNA integrity number as an indicator of
sufficient DNA quality in next-generation sequencing-based genomic
profiling. Am J Clin Pathol. 160:261–267. 2023.PubMed/NCBI View Article : Google Scholar
|
|
33
|
Pajnič IZ: Analysis of human degraded DNA
in forensic genetics. Genes(Basel). 16(1375)2025.PubMed/NCBI View Article : Google Scholar
|
|
34
|
Santaus TM, Zhang F, Li S, Colin Stine O
and Geddes CD: Effects of Lyse-It on endonuclease fragmentation,
function and activity. PLoS One. 14(e0223008)2019.PubMed/NCBI View Article : Google Scholar
|
|
35
|
Head SR, Komori HK, LaMere SA, Whisenant
T, Van Nieuwerburgh F, Salomon DR and Ordoukhanian P: Library
construction for next-generation sequencing: Overviews and
challenges. Biotechniques. 56:61–77. 2014.PubMed/NCBI View Article : Google Scholar
|
|
36
|
Simbolo M, Gottardi M, Corbo V, Fassan M,
Mafficini A, Malpeli G, Malpeli G, Lawlor RT and Scarpa A: DNA
qualification workflow for next generation sequencing of
histopathological samples. PLoS One. 8(e62692)2013.PubMed/NCBI View Article : Google Scholar
|
|
37
|
Choudhary A, Mambo E, Sanford T,
Boedigheimer M, Twomey B, Califano J, Hadd A, Oliner KS, Beaudenon
S, Latham GJ and Adai AT: Evaluation of an integrated clinical
workflow for targeted next-generation sequencing of low-quality
tumor DNA using a 51-gene enrichment panel. BMC Med Genomics.
7(62)2014.PubMed/NCBI View Article : Google Scholar
|
|
38
|
Schumacher S, Lauesgaard JM, Carlsson T,
Linder A and Sundfeldt K: Optimization of pre-analytical handling
to maintain DNA integrity in diagnostic papanicolaou tests. J Mol
Diagn. 27:199–208. 2025.PubMed/NCBI View Article : Google Scholar
|
|
39
|
Jain M, Koren S, Miga KH, Quick J, Rand
AC, Sasani TA, Tyson JR, Beggs AD, Dilthey AT, Fiddes IT, et al:
Nanopore sequencing and assembly of a human genome with ultra-long
reads. Nat Biotechnol. 36:338–345. 2018.PubMed/NCBI View Article : Google Scholar
|
|
40
|
van Dijk EL, Jaszczyszyn Y, Naquin D and
Thermes C: The third revolution in sequencing technology. Trends
Genet. 34:666–681. 2018.PubMed/NCBI View Article : Google Scholar
|
|
41
|
Neal CJ, Zbinden ZD, Douglas ME and
Douglas MR: Reducing DNA extraction costs through factorial design
for the DNAdvance Kit. BMC Res Notes. 17(397)2024.PubMed/NCBI View Article : Google Scholar
|