|
1
|
Siegel R, Naishadham D and Jemal A: Cancer
statistics, 2013. CA Cancer J Clin. 63:11–30. 2013. View Article : Google Scholar : PubMed/NCBI
|
|
2
|
Akagi H, Higuchi H, Sumimoto H, Igarashi
T, Kabashima A, Mizuguchi H, Izumiya M, Sakai G, Adachi M,
Funakoshi S, et al: Suppression of myeloid cell leukemia-1 (Mcl-1)
enhances chemotherapy-associated apoptosis in gastric cancer cells.
Gastric Cancer. 16:100–110. 2013. View Article : Google Scholar : PubMed/NCBI
|
|
3
|
Hippo Y, Taniguchi H, Tsutsumi S, Machida
N, Chong JM, Fukayama M, Kodama T and Aburatani H: Global gene
expression analysis of gastric cancer by oligonucleotide
microarrays. Cancer Res. 62:233–240. 2002.PubMed/NCBI
|
|
4
|
Lee CH, Bang SH, Lee SK, Song KY and Lee
IC: Gene expression profiling reveals sequential changes in gastric
tubular adenoma and carcinoma in situ. World J Gastroenterol.
11:1937–1945. 2005. View Article : Google Scholar : PubMed/NCBI
|
|
5
|
Chia NY, Deng N, Das K, Huang D, Hu L, Zhu
Y, Lim KH, Lee MH, Wu J, Sam XX, et al: Regulatory crosstalk
between lineage-survival oncogenes KLF5, GATA4 and GATA6
cooperatively promotes gastric cancer development. Gut. 64:707–719.
2015. View Article : Google Scholar : PubMed/NCBI
|
|
6
|
Wadhwa R, Song S, Lee JS, Yao Y, Wei Q and
Ajani JA: Gastric cancer-molecular and clinical dimensions. Nat Rev
Clin Oncol. 10:643–655. 2013. View Article : Google Scholar : PubMed/NCBI
|
|
7
|
Wapinski O and Chang HY: Long noncoding
RNAs and human disease. Trends Cell Biol. 21:354–361. 2011.
View Article : Google Scholar : PubMed/NCBI
|
|
8
|
Du Z, Fei T, Verhaak RG, Su Z, Zhang Y,
Brown M, Chen Y and Liu XS: Integrative genomic analyses reveal
clinically relevant long noncoding RNAs in human cancer. Nat Struct
Mol Biol. 20:908–913. 2013. View Article : Google Scholar : PubMed/NCBI
|
|
9
|
Passon DM, Lee M, Rackham O, Stanley WA,
Sadowska A, Filipovska A, Fox AH and Bond CS: Structure of the
heterodimer of human NONO and paraspeckle protein component 1 and
analysis of its role in subnuclear body formation. Proc Natl Acad
Sci USA. 109:4846–4850. 2012. View Article : Google Scholar : PubMed/NCBI
|
|
10
|
Song H, Sun W, Ye G, Ding X, Liu Z, Zhang
S, Xia T, Xiao B, Xi Y and Guo J: Long non-coding RNA expression
profile in human gastric cancer and its clinical significances. J
Transl Med. 11:2252013. View Article : Google Scholar : PubMed/NCBI
|
|
11
|
Hu Y, Wang J, Qian J, Kong X, Tang J, Wang
Y, Chen H, Hong J, Zou W, Chen Y, et al: Long noncoding RNA GAPLINC
regulates CD44-dependent cell invasiveness and associates with poor
prognosis of gastric cancer. Cancer Res. 74:6890–6902. 2014.
View Article : Google Scholar : PubMed/NCBI
|
|
12
|
Liu M, Li CM, Chen ZF, Ji R, Guo QH, Li Q,
Zhang HL and Zhou YN: Celecoxib regulates apoptosis and autophagy
via the PI3K/Akt signaling pathway in SGC-7901 gastric cancer
cells. Int J Mol Med. 33:1451–1458. 2014.PubMed/NCBI
|
|
13
|
Lan C, Yang L, Fan L, Zhang Y, Wang J, Guo
GJ, Wan S, Yang S, Wang R and Fang D: Celecoxib inhibits
helicobacter pylori-induced invasion of gastric cancer cells
through an adenine nucleotide translocator-dependent mechanism.
Anticancer Agents Med Chem. 13:1267–1272. 2013. View Article : Google Scholar : PubMed/NCBI
|
|
14
|
Yeh TS, Wu CW, Hsu KW, Liao WJ, Yang MC,
Li AF, Wang AM, Kuo ML and Chi CW: The activated Notch1 signal
pathway is associated with gastric cancer progression through
cyclooxygenase-2. Cancer Res. 69:5039–5048. 2009. View Article : Google Scholar : PubMed/NCBI
|
|
15
|
Hu PJ, Yu J, Zeng ZR, Leung WK, Lin HL,
Tang BD, Bai AH and Sung JJ: Chemoprevention of gastric cancer by
celecoxib in rats. Gut. 53:195–200. 2004. View Article : Google Scholar : PubMed/NCBI
|
|
16
|
Thiel A, Mrena J and Ristimäki A:
Cyclooxygenase-2 and gastric cancer. Cancer Metastasis Rev.
30:387–395. 2011. View Article : Google Scholar : PubMed/NCBI
|
|
17
|
Pang RP, Zhou JG, Zeng ZR, Li XY, Chen W,
Chen MH and Hu PJ: Celecoxib induces apoptosis in COX-2 deficient
human gastric cancer cells through Akt/GSK3β/NAG-1 pathway. Cancer
Lett. 251:268–277. 2007. View Article : Google Scholar : PubMed/NCBI
|
|
18
|
Chen Z, Liu M, Liu X, Huang S, Li L, Song
B, Li H, Ren Q, Hu Z, Zhou Y and Qiao L: COX-2 regulates E-cadherin
expression through the NF-κB/Snail signaling pathway in gastric
cancer. Int J Mol Med. 32:93–100. 2013.PubMed/NCBI
|
|
19
|
Saito Y, Suzuki H, Imaeda H, Matsuzaki J,
Hirata K, Tsugawa H, Hibino S, Kanai Y, Saito H and Hibi T: The
tumor suppressor microRNA-29c is downregulated and restored by
celecoxib in human gastric cancer cells. Int J Cancer.
132:1751–1760. 2013. View Article : Google Scholar : PubMed/NCBI
|
|
20
|
Patel RK and Jain M: NGS QC toolkit: A
platform for quality control of next-generation sequencing data.
Enc Metagenomics. 1–5. 2013. View Article : Google Scholar
|
|
21
|
Kim D, Pertea G, Trapnell C, Pimentel H,
Kelley R and Salzberg SL: TopHat2: Accurate alignment of
transcriptomes in the presence of insertions, deletions and gene
fusions. Genome Biol. 14:R362013. View Article : Google Scholar : PubMed/NCBI
|
|
22
|
Rosenbloom KR, Armstrong J, Barber GP,
Casper J, Clawson H, Diekhans M, Dreszer TR, Fujita PA, Guruvadoo
L, Haeussler M, et al: The UCSC genome browser database: 2015
update. Nucleic Acids Res. 43:D670–D681. 2015. View Article : Google Scholar : PubMed/NCBI
|
|
23
|
Trapnell C, Roberts A, Goff L, Pertea G,
Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL and Pachter L:
Differential gene and transcript expression analysis of RNA-seq
experiments with tophat and cufflinks. Nat Protoc. 7:562–578. 2012.
View Article : Google Scholar : PubMed/NCBI
|
|
24
|
Volders PJ, Helsens K, Wang X, Menten B,
Martens L, Gevaert K, Vandesompele J and Mestdagh P: LNCipedia: A
database for annotated human lncRNA transcript sequences and
structures. Nucleic Acids Res. 41:(Database Issue). D246–D251.
2013. View Article : Google Scholar : PubMed/NCBI
|
|
25
|
Gentleman RC, Carey VJ, Bates DM, Bolstad
B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, et al:
Bioconductor: Open software development for computational biology
and bioinformatics. Genome Biol. 5:R802004. View Article : Google Scholar : PubMed/NCBI
|
|
26
|
Franceschini A, Szklarczyk D, Frankild S,
Kuhn M, Simonovic M, Roth A, Lin J, Minguez P, Bork P, von Mering C
and Jensen LJ: STRING v9.1: Protein-protein interaction networks,
with increased coverage and integration. Nucleic Acids Res.
41:D808–D815. 2013. View Article : Google Scholar : PubMed/NCBI
|
|
27
|
Kohl M, Wiese S and Warscheid B:
Cytoscape: Software for visualization and analysis of biological
networks. Methods Mol Biol. 696:291–303. 2011. View Article : Google Scholar : PubMed/NCBI
|
|
28
|
Nepusz T, Yu H and Paccanaro A: Detecting
overlapping protein complexes in protein-protein interaction
networks. Nat Methods. 9:471–472. 2012. View Article : Google Scholar : PubMed/NCBI
|
|
29
|
Niwa T, Tsukamoto T, Toyoda T, Mori A,
Tanaka H, Maekita T, Ichinose M, Tatematsu M and Ushijima T:
Inflammatory processes triggered by Helicobacter pylori infection
cause aberrant DNA methylation in gastric epithelial cells. Cancer
Res. 70:1430–1440. 2010. View Article : Google Scholar : PubMed/NCBI
|
|
30
|
Mustapha P, Paris I, Garcia M, Tran CT,
Cremniter J, Garnier M, Faure JP, Barthes T, Boneca IG, Morel F, et
al: Chemokines and antimicrobial peptides cag-dependent early
response to helicobacter pylori infection in primary human gastric
epithelial cells. Infect Immun. 82:2881–2889. 2014. View Article : Google Scholar : PubMed/NCBI
|
|
31
|
Verbeke H, Geboes K, Van Damme J and
Struyf S: The role of CXC chemokines in the transition of chronic
inflammation to esophageal and gastric cancer. Biochim Biophys
Acta. 1825:117–129. 2012.PubMed/NCBI
|
|
32
|
Mukaida N, Sasaki S and Baba T: Chemokines
in cancer development and progression and their potential as
targeting molecules for cancer treatment. Mediators Inflamm.
2014:1703812014. View Article : Google Scholar : PubMed/NCBI
|
|
33
|
Cheng WL, Wang CS, Huang YH, Tsai MM,
Liang Y and Lin KH: Overexpression of CXCL1 and its receptor CXCR2
promote tumor invasion in gastric cancer. Ann Oncol. 22:2267–2276.
2011. View Article : Google Scholar : PubMed/NCBI
|
|
34
|
Park JY, Park KH, Bang S, Kim MH, Lee JE,
Gang J, Koh SS and Song SY: CXCL5 overexpression is associated with
late stage gastric cancer. J Cancer Res Clin Oncol. 133:835–840.
2007. View Article : Google Scholar : PubMed/NCBI
|
|
35
|
Song X, Zhong H, Zhou J, Hu X, Zhou Y, Ye
Y, Lu X, Wang J, Ying B and Wang L: Association between
polymorphisms of microRNA-binding sites in integrin genes and
gastric cancer in Chinese han population. Tumor Biol. 36:2785–2792.
2015. View Article : Google Scholar
|
|
36
|
Yang ZY, Jiang H, Qu Y, Wei M, Yan M, Zhu
ZG, Liu BY, Chen GQ, Wu YL and Gu QL: Metallopanstimulin-1
regulates invasion and migration of gastric cancer cells partially
through integrin β4. Carcinogenesis. 34:2851–2860. 2013. View Article : Google Scholar : PubMed/NCBI
|
|
37
|
Lin XC, Zhu Y, Chen WB, Lin LW, Chen DH,
Huang JR, Pan K, Lin Y, Wu BT, Dai Y and Tu ZG: Integrated analysis
of long non-coding RNAs and mRNA expression profiles reveals the
potential role of lncRNAs in gastric cancer pathogenesis. Int J
Oncol. 45:619–628. 2014.PubMed/NCBI
|
|
38
|
Chen S, Li P, Xiao B and Guo J: Long
noncoding RNA HMlincRNA717 and AC130710 have been officially named
as gastric cancer associated transcript 2 (GACAT2) and GACAT3,
respectively. Tumor Biol. 35:8351–8352. 2014. View Article : Google Scholar
|
|
39
|
Okugawa Y, Toiyama Y, Hur K, Toden S,
Saigusa S, Tanaka K, Inoue Y, Mohri Y, Kusunoki M, Boland CR, et
al: Metastasis-associated long non-coding RNA drives cancer
development and promotes peritoneal metastasis. Carcinogenesis.
35:2731–2739. 2014. View Article : Google Scholar : PubMed/NCBI
|
|
40
|
Chang W, Ma L, Lin L, Gu L, Liu X, Cai H,
Yu Y, Tan X, Zhai Y, Xu X, et al: Identification of novel hub genes
associated with liver metastasis of gastric cancer. Int J Cancer.
125:2844–2853. 2009. View Article : Google Scholar : PubMed/NCBI
|
|
41
|
Tang H, Kong Y, Guo J, Tang Y and Xie X,
Yang L, Su Q and Xie X: Diallyl disulfide suppresses proliferation
and induces apoptosis in human gastric cancer through Wnt-1
signaling pathway by up-regulation of miR-200b and miR-22. Cancer
Lett. 340:72–81. 2013. View Article : Google Scholar : PubMed/NCBI
|
|
42
|
Yan R, Peng X, Yuan X, Huang D, Chen J, Lu
Q, Lv N and Luo S: Suppression of growth and migration by blocking
the hedgehog signaling pathway in gastric cancer cells. Cell Oncol
(Dordr). 36:421–435. 2013. View Article : Google Scholar : PubMed/NCBI
|
