Spandidos Publications Logo
  • About
    • About Spandidos
    • Aims and Scopes
    • Abstracting and Indexing
    • Editorial Policies
    • Reprints and Permissions
    • Job Opportunities
    • Terms and Conditions
    • Contact
  • Journals
    • All Journals
    • Oncology Letters
      • Oncology Letters
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • International Journal of Oncology
      • International Journal of Oncology
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • Molecular and Clinical Oncology
      • Molecular and Clinical Oncology
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • Experimental and Therapeutic Medicine
      • Experimental and Therapeutic Medicine
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • International Journal of Molecular Medicine
      • International Journal of Molecular Medicine
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • Biomedical Reports
      • Biomedical Reports
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • Oncology Reports
      • Oncology Reports
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • Molecular Medicine Reports
      • Molecular Medicine Reports
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • World Academy of Sciences Journal
      • World Academy of Sciences Journal
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • International Journal of Functional Nutrition
      • International Journal of Functional Nutrition
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • International Journal of Epigenetics
      • International Journal of Epigenetics
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • Medicine International
      • Medicine International
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
  • Articles
  • Information
    • Information for Authors
    • Information for Reviewers
    • Information for Librarians
    • Information for Advertisers
    • Conferences
  • Language Editing
Spandidos Publications Logo
  • About
    • About Spandidos
    • Aims and Scopes
    • Abstracting and Indexing
    • Editorial Policies
    • Reprints and Permissions
    • Job Opportunities
    • Terms and Conditions
    • Contact
  • Journals
    • All Journals
    • Biomedical Reports
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • Experimental and Therapeutic Medicine
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • International Journal of Epigenetics
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • International Journal of Functional Nutrition
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • International Journal of Molecular Medicine
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • International Journal of Oncology
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • Medicine International
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • Molecular and Clinical Oncology
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • Molecular Medicine Reports
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • Oncology Letters
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • Oncology Reports
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
    • World Academy of Sciences Journal
      • Information for Authors
      • Editorial Policies
      • Editorial Board
      • Aims and Scope
      • Abstracting and Indexing
      • Bibliographic Information
      • Archive
  • Articles
  • Information
    • For Authors
    • For Reviewers
    • For Librarians
    • For Advertisers
    • Conferences
  • Language Editing
Login Register Submit
  • This site uses cookies
  • You can change your cookie settings at any time by following the instructions in our Cookie Policy. To find out more, you may read our Privacy Policy.

    I agree
Search articles by DOI, keyword, author or affiliation
Search
Advanced Search
presentation
Experimental and Therapeutic Medicine
Join Editorial Board Propose a Special Issue
Print ISSN: 1792-0981 Online ISSN: 1792-1015
Journal Cover
August-2019 Volume 18 Issue 2

Full Size Image

Sign up for eToc alerts
Recommend to Library

Journals

International Journal of Molecular Medicine

International Journal of Molecular Medicine

International Journal of Molecular Medicine is an international journal devoted to molecular mechanisms of human disease.

International Journal of Oncology

International Journal of Oncology

International Journal of Oncology is an international journal devoted to oncology research and cancer treatment.

Molecular Medicine Reports

Molecular Medicine Reports

Covers molecular medicine topics such as pharmacology, pathology, genetics, neuroscience, infectious diseases, molecular cardiology, and molecular surgery.

Oncology Reports

Oncology Reports

Oncology Reports is an international journal devoted to fundamental and applied research in Oncology.

Experimental and Therapeutic Medicine

Experimental and Therapeutic Medicine

Experimental and Therapeutic Medicine is an international journal devoted to laboratory and clinical medicine.

Oncology Letters

Oncology Letters

Oncology Letters is an international journal devoted to Experimental and Clinical Oncology.

Biomedical Reports

Biomedical Reports

Explores a wide range of biological and medical fields, including pharmacology, genetics, microbiology, neuroscience, and molecular cardiology.

Molecular and Clinical Oncology

Molecular and Clinical Oncology

International journal addressing all aspects of oncology research, from tumorigenesis and oncogenes to chemotherapy and metastasis.

World Academy of Sciences Journal

World Academy of Sciences Journal

Multidisciplinary open-access journal spanning biochemistry, genetics, neuroscience, environmental health, and synthetic biology.

International Journal of Functional Nutrition

International Journal of Functional Nutrition

Open-access journal combining biochemistry, pharmacology, immunology, and genetics to advance health through functional nutrition.

International Journal of Epigenetics

International Journal of Epigenetics

Publishes open-access research on using epigenetics to advance understanding and treatment of human disease.

Medicine International

Medicine International

An International Open Access Journal Devoted to General Medicine.

Journal Cover
August-2019 Volume 18 Issue 2

Full Size Image

Sign up for eToc alerts
Recommend to Library

  • Article
  • Citations
    • Cite This Article
    • Download Citation
    • Create Citation Alert
    • Remove Citation Alert
    • Cited By
  • Similar Articles
    • Related Articles (in Spandidos Publications)
    • Similar Articles (Google Scholar)
    • Similar Articles (PubMed)
  • Download PDF
  • Download XML
  • View XML
Article Open Access

Global downregulation of pigmentation‑associated genes in human premature hair graying

  • Authors:
    • Yunmeng Bian
    • Gang Wei
    • Xiao Song
    • Li Yuan
    • Hongyan Chen
    • Ting Ni
    • Daru Lu
  • View Affiliations / Copyright

    Affiliations: State Key Laboratory of Genetic Engineering and Ministry of Education Key Laboratory of Contemporary Anthropology, Institute of Genetics, School of Life Sciences, Fudan University, Shanghai 200438, P.R. China, Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Tongji University, Shanghai 200433, P.R. China
    Copyright: © Bian et al. This is an open access article distributed under the terms of Creative Commons Attribution License.
  • Pages: 1155-1163
    |
    Published online on: June 11, 2019
       https://doi.org/10.3892/etm.2019.7663
  • Expand metrics +
Metrics: Total Views: 0 (Spandidos Publications: | PMC Statistics: )
Metrics: Total PDF Downloads: 0 (Spandidos Publications: | PMC Statistics: )
Cited By (CrossRef): 0 citations Loading Articles...

This article is mentioned in:



Abstract

Premature hair graying, or canities, is a complex multi‑factorial process with negative effects on affected individuals. The aim of the present study was to investigate the possible underlying mechanisms of premature hair graying at the genetic level. A total of 5 unrelated Han Chinese individuals presenting with premature hair graying (25‑40 years old, with >1% hair affected) were enrolled in the present study. RNA sequencing was performed to identify gene expression changes between the follicular cells of grey and black hair from the cohort. A total of 127 differentially expressed genes (DEGs) were identified. These DEGs were overrepresented in categories associated with the pigmentation pathway, with a decreased expression of key genes responsible for melanin synthesis. Of note, the decreased expression of certain transcription factors and the increased expression of certain precursor microRNAs observed may explain for the downregulation of certain other DEGs, which were identified as their targets via Starbase v2 and Integrated Motif Activity Response Analysis. The DEGs were also enriched in terms associated with the nervous system, indicating that neural disturbances may also have certain roles in premature hair graying. Of note, five of the downregulated DEGs were associated with aging according to the JenAge Aging Factor Database. To the best of our knowledge, the present study was the first genome‑wide survey of the gene expression profile associated with premature hair graying. Dysfunction of the melanin biosynthesis pathway is probably the direct cause of hair graying and the present results provide valuable clues for further functional and mechanistic investigation.

Introduction

Hair graying may be classified as natural senile canities and premature graying. Natural senile canities usually has its onset after the age of 40 years and aggravates with the ongoing aging process (1). Unlike senile canities, premature graying occurs prior to the age of 25 years and is usually progressive and permanent (2,3). Although hair graying is considered to be genetically controlled and inheritable, the underlying mechanisms have remained largely elusive (4).

Hair color is determined by pigment granules in hair follicles, wherein melanin synthesis is particularly crucial (5). Mature melanocytes are densely distributed in hair bulbs to sustain active melanogenesis, which is strictly coupled to the anagen stage of the hair cycle (6,7). The biosynthesis of melanin and its subsequent transfer from melanocyte to hair bulb keratinocytes is a rather complex process (8). Previous molecular study has mainly focused on identifying genes that encode characteristic markers for pigmentation, including tyrosinase (TYR), OCA2 melanosomal transmembrane protein, TYR-related protein 1 (TYRP1) and solute carrier family 45 member 2 (SLC45A2) (9). Polymorphisms within these loci are associated with a normal variation in hair color traits (10). In addition, a genome-wide association study on the genetic basis of pigmentation in human subjects revealed that the single nucleotide polymorphism frequency distribution of these genes is linked to skin color and hair color (11,12). A broader study indicated that mutations in two pore segment channel 2, agouti signaling protein and melanocortin 1 receptor are associated with hair color and pigmentation (13).

Previous studies have focused on identifying genes that encode characteristic markers for premature graying of hair. A germline mutation in the syntaxin 17 gene of horses was recently identified to cause premature graying of hair (14) and telomerase reverse transcriptase mutation carriers may also present with premature hair graying (15). Reverse transcription polymerase chain reaction (RT-PCR) arrays on the gene expression profiles of the hair bulge and hair bulb revealed a significant downregulation of melanogenesis associated genes [tyrosinase (TYR), tyrosine related protein 1 (TYRP1), melanocyte inducing transcription factor, paired box gene 3 (PAX3) and proopiomelanocortin] in unpigmented hair bulbs and a downregulation of marker genes typical for melanocyte precursor cells [PAX3, SRY-Box 10 (SOX10) and dopachrome tautomerase) in unpigmented mid-segments compared with their pigmented analogues. Superoxide dismutase 3 transgenic mice exhibited premature aging, including hair graying, abnormal gait and a shortened life span (16).

Although previous studies provided candidate genes associated with hair graying, their results are limited due to the unavailability of related hereditary family members or an insufficient number of subjects to provide representative results (17). According to the central dogma of genetics, the genotype affects the phenotype through gene expression. Thus, it is straightforward to assume that a variance in gene expression between the grey and black hair follicles underlies the difference in hair color. However, to the best of our knowledge, no previous study has assessed premature hair graying from this genetic aspect. In the present study, an RNA sequencing (RNA-seq) analysis was performed to reveal gene expression changes between grey and black hair follicles from Han Chinese patients suffering from premature hair graying. It was intended to unravel the underlying mechanisms and potential candidate genes responsible for hair pigmentation loss.

Materials and methods

Subjects

A total of 5 unrelated Han Chinese donors who presented with premature graying since they were teenagers and had a clear family history of premature hair graying were enrolled in the present study. Their details are specified in (Table I). A total of 30 grey and 30 black hair follicles were randomly collected from each subject and stored in RNAlater® Stabilization Solution (Thermo Fisher Scientific, Inc., Waltham, MA, USA) at 4°C.

Table I.

Characteristics of the subjects affected by premature hair greying.

Table I.

Characteristics of the subjects affected by premature hair greying.

GenderAge (years)Onset age (years)Head areas affected
Male3115Parietal, frontal and temporal region
Male3010Occipital region
Female2812Parietal and frontal region
Male2610Parietal region
Male2812Parietal and temporal region
RNA extraction, library preparation and sequencing

Total RNA was extracted from each sample using the mirVana™ miRNA Detection Kit (Thermo Fisher Scientific, Inc.) in strict accordance with the manufacturer's protocol. The RNA-seq library was prepared using an Ion Total RNA-seq Kit v2 (Thermo Fisher Scientific, Inc.) following the manufacturer's protocol. RNA-seq libraries were sequenced on an Ion Proton™ System (Thermo Fisher Scientific, Inc.).

Bioinformatics analysis of RNA-seq data

Raw sequencing reads were aligned to the human genome (GRCh38/hg38) using STAR (Spliced Transcripts Alignment to a Reference software; http://code.google.com/p/rna-star/) (18). Ensembl gene annotation (http://www.ensembl.org/info/genome/genebuild/genome_annotation.html; release 79) was used for evaluating gene expression using Cufflinks (19), and differentially expressed genes (DEGs) between grey and black hair follicles were determined by Cuffdiff, a subpackage of Cufflinks. The ratio of Fragments per kilobase per million of grey to black hair was calculated and differential expression genes were then studied by log2FC. The criteria used to define DEGs were as follows: i) Fragments per kilobase per million mapped reads >1 in at least one sample of a sample pair; ii) fold change of at least 2 and iii) P<0.05.

Functional classification and enrichment analysis of the DEGs were performed using the online platform of the Database for Annotation, Visualization and Integrated Discovery (20). Gene Ontology (GO) terms were used to classify the DEGs. Association between microRNAs (miRs) and their targets were predicted by Starbase v2 (21). Transcription factors (TFs) and their target genes were predicted through Integrated Motif Activity Response Analysis (22). The Search Tool for the Retrieval of Interacting Genes/Proteins (STRING) database (23) was used to construct protein-protein interaction (PPI) networks the DEGs are involved in.

RT-quantitative (q)PCR

Total RNA was extracted from each hair follicle sample. The RNA (1 µg) was reverse-transcribed using a ReverTra Ace qPCR RT Kit (Toyobo, Osaka, Japan). β-actin was used as reference control. SYBR Green Realtime PCR Master Mix (ROX; Toyobo) was applied for PCR amplifications on a Bio-Rad CFX96 system (Bio-Rad Laboratories, Inc., Hercules, CA, USA) according to the manufacturer's protocol. The thermocycling program was as follows: 95°C for 5 min, followed by 40 cycles of 95°C for 30 sec, 60°C for 40 sec and 72°C for 45 sec. The primers used are listed in Table II.

Table II.

Primers used for polymerase chain reaction analysis.

Table II.

Primers used for polymerase chain reaction analysis.

Gene namePrimer sequence (5′→3′)Melting temperature (°C)Product length (bp)
TYRF: CTCCCCTCTTCAGCTGATGT57.0150
R: GCTGCTTTGAGAGGCATCC
TYRP1F: CCGAAACACAGTGGAAGGTT58.9162
R: TCTGTGAAGGTGTGCAGGAG
GJB1F: CCTGCACAGACATGAGACCA58.9192
R: CCACCAGCACCATGATTCTG
PMELF: GATAGGTGCTTTGCTGGCTG59.26159
R: GACACTTGACCACCTCTCCA
SOX10F: CTGGACCGCACACCTTGG59.0197
R: CTCAGCTCCACCTCCGATAG
SLC45A2F: CTGCCGACTTCATTGATGGG59.0175
R: TGCAAAGGTAGCGGTAGTGA
KITF: GGCGGGCATCATGATCAAAA59.25160
R: GCTTGCTTTGGACACAGACA
TRPM1F: CACCCAGAGCTACCCAACAGA59.2165
R: CGGATATACATGGCTTTATTGGAA
OCA2F: ACTCTTCTTTGCCCCAGATG
R: TCCCAAGACTCTTCAGCAGTG59.0158
β-actinF: GCGTGACATCAAGGAAGAAGC57.5108
R: CCGTCGGGTAGTTCGTAGCT

[i] F, forward; R, reverse.

Results

Summary of RNA-seq data

To identify changes in the gene expression profile associated with premature hair greying, RNA-seq libraries derived from each grey or black hair follicle were sequenced using the Ion Proton™ System (Thermo Fisher Scientific, Inc.). The number of raw sequenced reads for each sample ranged from 15.9 to 27.9 million, and the mapping percentages were 72.1–80.0%, which demonstrated an overall good mappability.

Gene expression changes between grey and black hair follicles

In order to identify genes with a role in premature hair greying, the samples were classified into a grey hair group and a black hair group, and the gene expression changes were compared between them. With the criteria of a 2-fold change in expression and P<0.05, a total of 127 DEGs were identified, including 47 upregulated and 80 downregulated DEGs (Fig. 1A). In order to confirm these DEGs, the changes in their expression were also assessed for each subject individually. Most of these DEGs were changed in the same direction among the individual subjects (Fig. 1B), demonstrating a consistence regarding the DEGs identified.

Figure 1.

DEGs between black and white hair follicles. (A) Volcano plot of expressed genes (fragments per kilobase per million mapped reads >1). (B) Heatmap of gene expression changes between black hair and white hair follicles in each subject. Each line represents a gene, each column represents the number per subject, and the colour of the heat map denotes the expression ratio. Functional categories of DEGs between white and black hair follicles. GO analysis was performed to identify the top 10 terms enriched by the DEGs in the categories (C) GO_BP and (D) GO_CC. Circle size represents the number of genes (the larger the circle size, the higher the number of genes). The lowest number of genes in C and D were four and five, respectively. DEG, differentially expressed gene; GO, gene ontology; BP, biological process; CC, cellular component.

To determine the functional roles of these DEGs, the functional categories they were involved in were then examined. Of note, the DEGs were mainly enriched in functional categories closely linked to pigment synthesis or metabolic pathways (Fig. 1C). The DEGs were also known to be located in pigment granules and melanosomes (Fig. 1D), which provided an explanation for the downregulation of these genes in grey hair follicles that had lost their ability to produce melanin, which lead to hair graying. Of note, genes associated with the nervous system accounted for the largest number of DEGs, although the significance of their enrichment was not as high as that in the categories associated with pigmentation. This may imply a disturbance of the nervous system in grey hair follicles compared with that in black ones.

Genes associated with pigmentation and melanin synthesis are predominantly decreased in grey hair follicles

In order to obtain a comprehensive view of genetic changes associated with pigmentation and melanin synthesis, the DEGs identified were classified into pigmentation/melanin-associated GO terms (24). The results indicated that all of the pigmentation/melanin-associated DEGs were decreased in grey hair follicles (Fig. 2A). This suggested that pathways involved in melanin biosynthesis are downregulated in grey hair follicles. These DEGs comprised various genes that are well-known to be responsible for melanin biosynthesis, including TYR, melan-A (MLANA), premelanosome protein (PMEL), TYRP1, SLC45A2, KIT, G protein-coupled receptor 143 (GPR143) and OCA2.

Figure 2.

Genes associated with pigmentation and melanin synthesis are predominantly decreased in white hair follicles. (A) GOCircle plot of DEGs associated with pigmentation-associated GO terms. The height of the inner bars indicates the significance of the corresponding terms (-log10-adjusted P-value), and the color corresponds to the enrichment Z-score (GOplot). The outer ring displays scatterplots of the expression changes (log2|FC|) for genes in each term, wherein blue represents decreased expression. (B and C) Expression changes of DEGs predicted to be targeted by miRs derived from (B) upregulated miR-encoding genes and (C) downregulated TFs. The gradually changing green-to-pink bars denote the log2|FC| of the target DEGs. The targeted genes are displayed on the left of the circle, while miRs or TFs are presented on the right (red indicates RUNX3 and blue indicates SOX10). miRs or TFs and their predicted targets are linked via ribbons inside. DEG, differentially expressed gene; TF, transcription factor; GO, gene ontology; FC, fold change; miR, microRNA; SOX, sex-determining region Y box; RUNX, runt-related TF.

Differentially expressed miRs and TFs regulating pigmentation/melanin-associated DEGs in grey hair follicles

Among the DEGs identified, 13 genes encoded miRs, all of which were significantly increased in grey hair follicles; they accounted for 28% (13/47) of all upregulated DEGs. It has been previously reported that miRs may be transcribed by RNA polymerase II and have polyA tails (25), and it was therefore likely that the miR-associated RNA-seq reads are from precursors of miRs. Since the majority of the DEGs (80/127; 63%) were decreased in the grey hairs, the changes in the expression of DEGs targeted by these upregulated miR-encoding genes were examined (Fig. 2B). Of note, most of the miR-encoding DEGs (11 out of 13) had the other DEGs as their predicted targets (Table III), the majority of which were significantly decreased in grey compared with black hair follicles. Furthermore, among the miR-targeted DEGs, two genes (syndecan binding protein and KIT) are involved in pigment-associated pathways (26,27).

Table III.

Differentially expressed genes that are predicted targets of miRs in Table IV.

Table III.

Differentially expressed genes that are predicted targets of miRs in Table IV.

Gene IDGeneFPKM in black hairFPKM in white hairLog2|FC|P-value
ENSG00000157404KIT4.220.14−4.880.00005
ENSG00000136040PLXNC16.360.46−3.790.00005
ENSG00000104177MYEF21.290.17−2.920.00005
ENSG00000020633RUNX31.480.26−2.490.00005
ENSG00000145335SNCA6.531.28−2.350.00005
ENSG00000071575TRIB22.720.56−2.280.00005
ENSG00000123095BHLHE415.331.2−2.160.01575
ENSG00000130558OLFM11.270.33−1.940.00010
ENSG00000137575SDCBP10.592.79−1.930.00005
ENSG00000048740CELF21.840.49−1.910.00005
ENSG00000197283SYNGAP120.45.71−1.840.00240
ENSG00000166173LARP61.390.4−1.80.01725
ENSG00000026025VIM26.357.8−1.760.00005
ENSG00000204764RANBP171.350.43−1.650.02195
ENSG00000115825PRKD36.132.31−1.410.01485
ENSG00000082397EPB41L31.850.73−1.340.00015
ENSG00000173482PTPRM2.160.88−1.290.00870
ENSG00000153823PID11.420.59−1.260.00345
ENSG00000115414FN11.680.72−1.230.01050
ENSG00000185008ROBO21.50.65−1.20.04845
ENSG00000086289EPDR13.041.42−1.090.00595
ENSG00000116641DOCK711.495.51−1.060.00210
ENSG00000249859PVT110.1120.2910.01935
ENSG00000135346CGA14.8832.891.140.00005
ENSG00000137941TTLL71.774.441.320.00525
ENSG00000105784RUNDC3B0.441.411.70.00595
ENSG00000113532ST8SIA40.331.211.880.01150
ENSG00000151967SCHIP10.091.844.320.00015

[i] miR, microRNA; FPKM, fragments per kilobase per million mapped reads; FC, fold change.

Another category of regulators affecting gene expression changes are TFs. Therefore, it was then examined whether the DEGs included any TFs and their potential targets. A total of 4 DEGs encoding TFs were identified: AE binding protein 1, coiled coil domain-containing 17, runt-related transcription factor 3 (RUNX3) and SOX10, all of which were significantly decreased in grey hair follicles. Of note, two of these TFs, namely RUNX3 and SOX10, had potential targets among the other DEGs (Table IV), which also tended to be decreased in grey hair follicles (Fig. 2C), indicating an association between the downregulation of the TFs and their potential target genes in grey hair follicles. Transient receptor potential cation channel subfamily M member 1 (TRPM1), which encodes a permeable cation channel that is expressed in melanocytes and has a role in melanin synthesis, was among the downregulated genes regulated by these TFs (28,29). Of note, SOX10 have been proved to have the ability to drive the differentiation of melanocytes (30).

Table IV.

Differentially expressed genes targeted by differential expression of genes encoding transcription factors (RUNX3 and sex-determining region Y box 10).

Table IV.

Differentially expressed genes targeted by differential expression of genes encoding transcription factors (RUNX3 and sex-determining region Y box 10).

Gene IDGeneFPKM in black hairFPKM in white hairLog2|FC|P-value
ENSG00000020633RUNX31.480.26−2.490.00005
ENSG00000048740CELF21.840.49−1.910.00005
ENSG00000069424KCNAB24.880.99−2.310.00005
ENSG00000086289EPDR13.041.42−1.090.00595
ENSG00000089101CFAP611.420.25−2.520.00005
ENSG00000091986CCDC804.38.751.030.00185
ENSG00000104177MYEF21.290.17−2.920.00005
ENSG00000115414FN11.680.72−1.230.01050
ENSG00000123560PLP13.130.06−5.740.01035
ENSG00000130751NPAS10.551.471.420.02150
ENSG00000134160TRPM18.520.15−5.830.00025
ENSG00000136732GYPC1.430.09−4.050.04075
ENSG00000154277UCHL18.491.48−2.520.00005
ENSG00000173482PTPRM2.160.88−1.290.00870
ENSG00000184724KRTAP6-16.0516.751.470.00005
ENSG00000187045TMPRSS61.190.53−1.160.02810
ENSG00000197415VEPH12.630.37−2.850.00170
ENSG00000204764RANBP171.350.43−1.650.02195
ENSG00000221887HMSD1.580.02−6.140.00060

[i] FPKM, fragments per kilobase per million mapped reads; RUNX, runt-related transcription factor; FC, fold change.

PPI network centers for genes associated with melanin synthesis

A protein usually interacts with other proteins to function properly. To obtain a systematic view of the biological roles of the DEGs in grey hair follicles, the PPI networks were analyzed using DEGs by means of the STRING database. The result indicated that DEGs were involved in a PPI network centering on genes associated with melanin biosynthesis (Fig. 3), including TYR, TYRP1, MLANA, GPR143, OCA2, PMEL, SLC24A5 and SLC45A2. Further genes that are not involved in melanin synthesis, including KIT ligand, checkpoint kinase 1 and integrin subunit β3, were also identified. However, they may affect the melanin biosynthesis process and ultimately affect hair pigmentation through interacting with genes directly involved in melanin biosynthesis.

Figure 3.

Protein-protein interaction network of the DEGs (TYR, TYRP1, MLANA, GPR143, OCA2, PMEL, SLC24A5 and SLC45A2). The network was generated using the STRING database by inputting the gene names of the DEGs between white hair and black hair follicles. DEG, differentially expressed gene.

Validation of RNA-seq data by RT-qPCR

In order to verify gene expression differences determined via RNA-seq analysis, 9 randomly selected genes [TYR, PMEL, TYRP1, gap junction β1 (GJB1), SOX10, SLC45A2, KIT, TRPM1 and OCA2] were detected by RT-qPCR. As presented in Fig. 4, the abscissa represents different samples, and ordinates are the relative expression value of grey vs. black hair. The results indicated that the expressional changes of all of these genes were consistent with those detected by RNA-seq analysis, thus confirming that all genes were consistently downregulated in grey vs. black hair follicles.

Figure 4.

Validation of 9 differentially expressed genes in white vs. black hair follicles. The abundance of target genes was normalized relative to the abundance of the β-actin gene. The values were calculated by using the 2−ΔΔCq method. RNA was extracted from the gray and black hair of 10 patients. Each list indicates the log ratio of gray/black hair gene expression in each patient. A total of 10 columns present the log ratio. Nine genes are selected for quantitative analysis.

Discussion

Hair graying, particularly premature hair graying, changes the appearance of affected individuals in a mostly undesired manner and has attracted the attention of researchers. To date, the underlying causes have remained largely elusive. In the present study, a genome-wide RNA-seq profiling analysis was performed using grey and black hair follicles from the same individuals with premature hair graying. It was revealed that pigment synthesis pathways were significantly impaired in grey vs. black hair, with a significantly decreased expression of multiple key genes crucial for the stability, trafficking and proliferation of melanocytes (31). The present results support the theory that premature graying may occur due to exhaustion of the melanocytes' capability to produce hair pigmentation.

Previous studies have suggested that premature hair graying is associated with factors affecting melanogenesis, including nutritional deficiencies (32), insufficient neuroendocrine stimulation (33) and ionic signaling across melanosomes (34). The identified DEGs included those with similar functions with this regard, e.g. MCHR1, TRPM1 and SLC45A2. MCHR1 acts as a receptor for melanin-concentrating hormone (35), TRPM1 regulates pigmentation at the plasma membrane level (29) and SLC45A2 modulates the melanosomal pH for optimal TYR activity required for melanogenesis (36). Of note, the present study identified that GJB1 was downregulated in grey vs. black hair follicles, which known to contribute to pigment transfer between melanocytes and neighboring keratinocytes (37).

While pigmentation-associated pathways are impaired in grey hair follicles, the underlying mechanisms of their inhibition/damage during hair greying remain to be elucidated. Of note, all of the 13 DEGs encoding miRs identified in the present study were significantly upregulated in grey hair follicles, indicating a substantial increase in the abundance of the corresponding mature miRs. Furthermore, the majority of the DEGs predicted to be targets of these miRs were significantly decreased in grey hair follicles, which is in line with the known mechanism that miRs reduce the expression of their target genes.

Another reason could be the decreased TFs in grey hair follicles. Among the four decreased TFs expressed in gray hair, two TFs (RUNX3 and SOX10) had potential target genes in other DEGs, which were also downregulated in gray hair, indicating that the downregulation of TFs were associated with their potential target genes in gray hair follicles. In addition, GJB1 was co-expressed with a crucial node, SOX10, in the PPI network. It has been reported that SOX10, in synergy with early growth response 2, may activate GJB1 in melanocytes, which may cause and alteration in melanogenesis (38,39).

Another point worth mentioning is that a relatively high fraction of DEGs was associated with the nervous system, including potassium voltage-gated channel subfamily Q member 2, basic helix-loop-helix family member e41, prostaglandin D2 synthase and centrosomal protein of 152 kDa, which are thought to be involved in controlling the circadian rhythm. Defects in these genes have been reported to be associated with a short sleep phenotype (40,41). It is widely accepted that nerve signaling defects, including a disturbed sleeping ability, may lead to hair graying, which probably functions through its further effects on the nervous system and downstream pigmentation pathways (42). While it remains elusive whether and how the nervous system contributes to premature hair graying, the present results may indicate a novel aspect regarding the causes of hair graying. Since hair graying has been considered to be associated with aging of the hair follicle pigmentation system (43), the JenAge Ageing Factor Database (44) was searched for the DEGs in grey hair identified in the present study. A total of 5 genes were included in the online database, namely acetylcholine esterase, ATM, proprotein convertase subtilisin/kexin type 2, ubiquitin C-terminal hydrolase L1 and ventricular zone expressed PH domain containing 1, all of which had a decreased expression in white hair follicles, implying the decline of melanocyte-associated processes.

In conclusion, the present study was the first, to the best of our knowledge, to perform a genome-wide transcriptome profiling of human hair follicles affected by premature hair graying, which uncovered that damage of the melanin biosynthesis pathway was the direct cause of the decline hair pigmentation and the resulting hair graying. Furthermore, it was indicated that deregulated miRs and TFs, as well as neural disturbances, may be underlying causes. The present study provided multiple clues worthy of subsequent study to elucidate the mechanisms underlying canities and human premature hair graying. However, the present study is limited as only the processes occurring in subjects with premature hair greying were assessed, while the genetic predisposition to hair greying was not be determined. The genetic differences between subjects with premature hair greying and normal individuals should be assessed to identify the genes that are the primary cause of this condition.

Acknowledgements

The authors would like to thank Dr Shiming Wang, Dr Cong Huai and Dr Hexige Saiyin (School of Life Sciences, Fudan University, Shandhai, China), as well as Dr Xiaotian Wang (Thermo Fisher Scientific, Inc.) for their assistance in sample collection and RNA-seq library construction.

Funding

The present study was supported by the National Natural Science Foundation (grant no. 31571371) and the National Key Research and Development Plan (grant no. 2017YFC090750).

Availability of data and materials

The data used and/or analyzed during the present study are available from the corresponding author on reasonable request.

Authors' contributions

DL, TN and HC conceived and designed the experiments. YB, XS and LY collected hair follicles, prepared RNA samples and constructed RNA-Seq libraries. GW analyzed transcriptome data. YB and LY performed qRT-PCR. YB and GW wrote the paper. All authors read and approved the final version of the manuscript.

Ethical approval and consent to participate

The present study was performed according to the declaration of Helsinki and was approved by the Research Ethics Committee at Fudan University (Shanghai, China). Informed consent was obtained from each participant prior to enrollment.

Patient consent for publication

Not applicable.

Competing interests

The authors declare that they have no competing interests.

References

1 

Panhard S, Lozano I and Loussouarn G: Greying of the human hair: A worldwide survey, revisiting the ‘50’ rule of thumb. Br J Dermatol. 167:865–873. 2012. View Article : Google Scholar : PubMed/NCBI

2 

Tobin DJ: Human hair pigmentation-biological aspects. Int J Cosmet Sci. 30:233–257. 2008. View Article : Google Scholar : PubMed/NCBI

3 

Tobin DJ and Paus R: Graying: Gerontobiology of the hair follicle pigmentary unit. Exp Gerontol. 36:29–54. 2001. View Article : Google Scholar : PubMed/NCBI

4 

Pandhi D and Khanna D: Premature graying of hair. Indian J Dermatol Venereol Leprol. 79:641–653. 2013. View Article : Google Scholar : PubMed/NCBI

5 

Slominski A, Wortsman J, Plonka PM, Schallreuter KU, Paus R and Tobin DJ: Hair follicle pigmentation. J Invest Dermatol. 124:13–21. 2005. View Article : Google Scholar : PubMed/NCBI

6 

Slominski A, Paus R and Costantino R: Differential expression and activity of melanogenesis-related proteins during induced hair growth in mice. J Invest Dermatol. 96:172–179. 1991. View Article : Google Scholar : PubMed/NCBI

7 

Slominski A, Paus R, Plonka P, Chakraborty A, Maurer M, Pruski D and Lukiewicz S: Melanogenesis during the anagen-catagen-telogen transformation of the murine hair cycle. J Invest Dermatol. 102:862–869. 1994. View Article : Google Scholar : PubMed/NCBI

8 

Tobin DJ: The cell biology of human hair follicle pigmentation. Pigment Cell Melanoma Res. 24:75–88. 2011. View Article : Google Scholar : PubMed/NCBI

9 

Rees JL: Genetics of hair and skin color. Annu Rev Genet. 37:67–90. 2003. View Article : Google Scholar : PubMed/NCBI

10 

Sturm RA: Molecular genetics of human pigmentation diversity. Hum Mol Genet. 18:R9–R17. 2009. View Article : Google Scholar : PubMed/NCBI

11 

Sabeti PC, Varilly P, Fry B, Lohmueller J, Hostetter E, Cotsapas C, Xie X, Byrne EH, McCarroll SA, Gaudet R, et al: Genome-wide detection and characterization of positive selection in human populations. Nature. 449:913–918. 2007. View Article : Google Scholar : PubMed/NCBI

12 

Han J, Kraft P, Nan H, Guo Q, Chen C, Qureshi A, Hankinson SE, Hu FB, Duffy DL, Zhao ZZ, et al: A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation. PLoS Genet. 4:e10000742008. View Article : Google Scholar : PubMed/NCBI

13 

Sulem P, Gudbjartsson DF, Stacey SN, Helgason A, Rafnar T, Jakobsdottir M, Steinberg S, Gudjonsson SA, Palsson A, Thorleifsson G, et al: Two newly identified genetic determinants of pigmentation in Europeans. Nat Genet. 40:835–837. 2008. View Article : Google Scholar : PubMed/NCBI

14 

Zhao Z, Duffy D, Thomas S, Martin NG, Hayward NK and Montgomery GW: Polymorphisms in the syntaxin 17 gene are not associated with human cutaneous malignant melanoma. Melanoma Res. 19:80–85. 2009. View Article : Google Scholar : PubMed/NCBI

15 

Diaz de Leon A, Cronkhite JT, Yilmaz C, Brewington C, Wang R, Xing C, Hsia CCW and Garcia CK: Subclinical lung disease, macrocytosis, and premature graying in kindreds with telomerase (TERT) mutations. Chest. 140:753–763. 2011. View Article : Google Scholar : PubMed/NCBI

16 

Kwon MJ, Lee KY, Lee HW, Kim JH and Kim TY: SOD3 variant, R213G, altered SOD3 function, leading to ROS-mediated inflammation and damage in multiple organs of premature aging mice. Antioxid Redox Signal. 23:985–999. 2015. View Article : Google Scholar : PubMed/NCBI

17 

Lin BD, Mbarek H, Willemsen G, Dolan CV, Fedko IO, Abdellaoui A, de Geus EJ, Boomsma DI and Hottenga JJ: Heritability and genome-wide association studies for hair color in a dutch twin family based sample. Genes (Basel). 6:559–576. 2015. View Article : Google Scholar : PubMed/NCBI

18 

Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S, Batut P, Chaisson M and Gingeras TR: STAR: Ultrafast universal RNA-seq aligner. Bioinformatics. 29:15–21. 2013. View Article : Google Scholar : PubMed/NCBI

19 

Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL and Pachter L: Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc. 7:562–578. 2012. View Article : Google Scholar : PubMed/NCBI

20 

Benjamini Y and Hochberg Y: Controlling the false discovery rate-a practical and powerful approach to multiple testing. J Royal Stat Soc Series B-Methodol. 57:289–300. 1995.

21 

Li JH, Liu S, Zhou H, Qu LH and Yang JH: starBase v2.0: Decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. Nucleic Acids Res 42 (Database issue). D92–D97. 2014. View Article : Google Scholar

22 

Balwierz PJ, Pachkov M, Arnold P, Gruber AJ, Zavolan M and van Nimwegen E: ISMARA: Automated modeling of genomic signals as a democracy of regulatory motifs. Genome Res. 24:869–884. 2014. View Article : Google Scholar : PubMed/NCBI

23 

Szklarczyk D, Franceschini A, Kuhn M, Simonovic M, Roth A, Minguez P, Doerks T, Stark M, Muller J, Bork P, et al: The STRING database in 2011: Functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res 39 (Database issue). D561–D568. 2011. View Article : Google Scholar

24 

Walter W, Sánchez-Cabo F and Ricote M: GOplot: An R package for visually combining expression data with functional analysis. Bioinformatics. 31:2912–2914. 2015. View Article : Google Scholar : PubMed/NCBI

25 

Lee Y, Kim M, Han J, Yeom KH, Lee S, Baek SH and Kim VN: MicroRNA genes are transcribed by RNA polymerase II. EMBO J. 23:4051–4060. 2004. View Article : Google Scholar : PubMed/NCBI

26 

Aissaoui H, Prévost C, Boucharaba A, Sanhadji K, Bordet JC, Négrier C and Boukerche H: MDA-9/syntenin is essential for factor VIIa-induced signaling, migration, and metastasis in melanoma cells. J Biol Chem. 290:3333–3348. 2015. View Article : Google Scholar : PubMed/NCBI

27 

Jiang S, Yu X and Dong C: MiR-137 affects melanin synthesis in mouse melanocyte by repressing the expression of c-Kit and Tyrp2 in SCF/c-Kit signaling pathway. Biosci Biotechnol Biochem. 80:2115–2121. 2016. View Article : Google Scholar : PubMed/NCBI

28 

Gees M, Owsianik G, Nilius B and Voets T: TRP channels. Compr Physiol. 2:563–608. 2012.PubMed/NCBI

29 

Oancea E, Vriens J, Brauchi S, Jun J, Splawski I and Clapham DE: TRPM1 forms ion channels associated with melanin content in melanocytes. Sci Signal. 2:ra212009. View Article : Google Scholar : PubMed/NCBI

30 

Harris ML, Buac K, Shakhova O, Hakami RM, Wegner M, Sommer L and Pavan WJ: A dual role for SOX10 in the maintenance of the postnatal melanocyte lineage and the differentiation of melanocyte stem cell progenitors. PLoS Genet. 9:e10036442013. View Article : Google Scholar : PubMed/NCBI

31 

D'Mello SA, Finlay GJ, Baguley BC and Askarian-Amiri ME: Signaling pathways in melanogenesis. Int J Mol Sci. 17:E11442016. View Article : Google Scholar : PubMed/NCBI

32 

Fatemi Naieni F, Ebrahimi B, Vakilian HR and Shahmoradi Z: Serum iron, zinc, and copper concentration in premature graying of hair. Biol Trace Elem Res. 146:30–34. 2012. View Article : Google Scholar : PubMed/NCBI

33 

Paus R: A neuroendocrinological perspective on human hair follicle pigmentation. Pigment Cell Melanoma Res. 24:89–106. 2011. View Article : Google Scholar : PubMed/NCBI

34 

Bellono NW and Oancea EV: Ion transport in pigmentation. Arch Biochem Biophys. 563:35–41. 2014. View Article : Google Scholar : PubMed/NCBI

35 

Kemp EH, Waterman EA, Hawes BE, O'Neill K, Gottumukkala RV, Gawkrodger DJ, Weetman AP and Watson PF: The melanin-concentrating hormone receptor 1, a novel target of autoantibody responses in vitiligo. J Clin Invest. 109:923–930. 2002. View Article : Google Scholar : PubMed/NCBI

36 

Dooley CM, Schwarz H, Mueller KP, Mongera A, Konantz M, Neuhauss SC, Nüsslein-Volhard C and Geisler R: Slc45a2 and V-ATPase are regulators of melanosomal pH homeostasis in zebrafish, providing a mechanism for human pigment evolution and disease. Pigment Cell Melanoma Res. 26:205–217. 2013. View Article : Google Scholar : PubMed/NCBI

37 

Joshi PG, Nair N, Begum G, Joshi NB, Sinkar VP and Vora S: Melanocyte-keratinocyte interaction induces calcium signalling and melanin transfer to keratinocytes. Pigment Cell Res. 20:380–384. 2007.PubMed/NCBI

38 

LeBlanc SE, Ward RM and Svaren J: Neuropathy-associated Egr2 mutants disrupt cooperative activation of myelin protein zero by Egr2 and Sox10. Mol Cell Biol. 27:3521–3529. 2007. View Article : Google Scholar : PubMed/NCBI

39 

Ludwig A, Rehberg S and Wegner M: Melanocyte-specific expression of dopachrome tautomerase is dependent on synergistic gene activation by the Sox10 and Mitf transcription factors. FEBS Letters. 556:236–244. 2004. View Article : Google Scholar : PubMed/NCBI

40 

Lee IC, Yang JJ and Li SY: A KCNQ2 E515D mutation associated with benign familial neonatal seizures and continuous spike and waves during slow-wave sleep syndrome in Taiwan. J Formos Med Assoc. 116:711–719. 2017. View Article : Google Scholar : PubMed/NCBI

41 

Pellegrino R, Kavakli IH, Goel N, Cardinale CJ, Dinges DF, Kuna ST, Maislin G, Van Dongen HP, Tufik S, Hogenesch JB, et al: A novel BHLHE41 variant is associated with short sleep and resistance to sleep deprivation in humans. Sleep. 37:1327–1336. 2014. View Article : Google Scholar : PubMed/NCBI

42 

Anderson NE and Haas LF: Neurological complications of Werner's syndrome. J Neurol. 250:1174–1178. 2003. View Article : Google Scholar : PubMed/NCBI

43 

Tobin DJ: Aging of the hair follicle pigmentation system. Int J Trichology. 1:83–93. 2009. View Article : Google Scholar : PubMed/NCBI

44 

Huhne R, Thalheim T and Sühnel J: AgeFactDB-the JenAge ageing factor database-towards data integration in ageing research. Nucleic Acids Research (Database issue). 42:D892–D896. 2014. View Article : Google Scholar

Related Articles

  • Abstract
  • View
  • Download
  • Twitter
Copy and paste a formatted citation
Spandidos Publications style
Bian Y, Wei G, Song X, Yuan L, Chen H, Ni T and Lu D: Global downregulation of pigmentation‑associated genes in human premature hair graying. Exp Ther Med 18: 1155-1163, 2019.
APA
Bian, Y., Wei, G., Song, X., Yuan, L., Chen, H., Ni, T., & Lu, D. (2019). Global downregulation of pigmentation‑associated genes in human premature hair graying. Experimental and Therapeutic Medicine, 18, 1155-1163. https://doi.org/10.3892/etm.2019.7663
MLA
Bian, Y., Wei, G., Song, X., Yuan, L., Chen, H., Ni, T., Lu, D."Global downregulation of pigmentation‑associated genes in human premature hair graying". Experimental and Therapeutic Medicine 18.2 (2019): 1155-1163.
Chicago
Bian, Y., Wei, G., Song, X., Yuan, L., Chen, H., Ni, T., Lu, D."Global downregulation of pigmentation‑associated genes in human premature hair graying". Experimental and Therapeutic Medicine 18, no. 2 (2019): 1155-1163. https://doi.org/10.3892/etm.2019.7663
Copy and paste a formatted citation
x
Spandidos Publications style
Bian Y, Wei G, Song X, Yuan L, Chen H, Ni T and Lu D: Global downregulation of pigmentation‑associated genes in human premature hair graying. Exp Ther Med 18: 1155-1163, 2019.
APA
Bian, Y., Wei, G., Song, X., Yuan, L., Chen, H., Ni, T., & Lu, D. (2019). Global downregulation of pigmentation‑associated genes in human premature hair graying. Experimental and Therapeutic Medicine, 18, 1155-1163. https://doi.org/10.3892/etm.2019.7663
MLA
Bian, Y., Wei, G., Song, X., Yuan, L., Chen, H., Ni, T., Lu, D."Global downregulation of pigmentation‑associated genes in human premature hair graying". Experimental and Therapeutic Medicine 18.2 (2019): 1155-1163.
Chicago
Bian, Y., Wei, G., Song, X., Yuan, L., Chen, H., Ni, T., Lu, D."Global downregulation of pigmentation‑associated genes in human premature hair graying". Experimental and Therapeutic Medicine 18, no. 2 (2019): 1155-1163. https://doi.org/10.3892/etm.2019.7663
Follow us
  • Twitter
  • LinkedIn
  • Facebook
About
  • Spandidos Publications
  • Careers
  • Cookie Policy
  • Privacy Policy
How can we help?
  • Help
  • Live Chat
  • Contact
  • Email to our Support Team