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Prognostic biomarker SYK and its correlation with immune infiltrates in glioma

  • Authors:
    • Changxin Wang
    • Pei Liu
    • Yu Sun
    • Ting Liu
    • Xiaoxiao Xu
    • Jiamin Guo
    • Zheng Gong
    • Haixin Sun
    • Rui Xu
  • View Affiliations / Copyright

    Affiliations: School of Basic Medicine, Qingdao University, Qingdao, Shandong 266071, P.R. China, College of Life Sciences, Qingdao University, Qingdao, Shandong 266071, P.R. China, Medical College, Qingdao University, Qingdao, Shandong 266071, P.R. China, Medical College, Qingdao University, Qingdao, Shandong 266071, P.R. China, Department of Interventional Radiology, The Affiliated Hospital of Qingdao University, Qingdao, Shandong 266000, P.R. China
    Copyright: © Wang et al. This is an open access article distributed under the terms of Creative Commons Attribution License.
  • Article Number: 499
    |
    Published online on: September 7, 2023
       https://doi.org/10.3892/etm.2023.12198
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Abstract

The tumor microenvironment (TME) provides excellent conditions for the development of glioma. The present study sought to identify the prognostic factors of glioma that could be used to improve the prognosis of patients with this disease. In the present study, Cell‑type Identification by Estimating Relative Subsets of RNA Transcripts (CIBERSORT) and Estimation of Stromal and Immune cells in Malignant Tumor tissues using Expression data calculations were employed to estimate the ratio of tumor‑infiltrating immune cells and the quantity of immune and stromal components in 698 glioma cases from the Cancer Genome Atlas database. In addition, certain differentially expressed genes were studied by Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses and single genes associated with prognosis were identified by protein‑protein interaction (PPI) network and Cox combined analysis. The immune and stromal scores of the TME were significantly associated with glioma patient survival. By using the PPI network and Cox regression analyses, spleen tyrosine kinase (SYK) was eventually identified as the best prognostic factor for patients with glioma. In addition, Gene Set Enrichment Analysis and CIBERSORT analyses were employed. The former indicated that the high‑expression SYK group genes were mainly enriched in immune‑related activities. The latter revealed that SYK expression was positively associated with T cell cluster of differentiation 4 memory resting and monocytes. The aforementioned experimental analyses provided the theoretical basis for the biological prediction of SYK. The data indicated that SYK contributed to immune predictors in patients with glioma by facilitating the shift of the TME from immune dominance to metabolic activity. Finally, reverse transcription‑quantitative PCR and western blotting were used to verify the single gene expression in glioma cells. This may provide prognostic value for the treatment of glioma.
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Copy and paste a formatted citation
Spandidos Publications style
Wang C, Liu P, Sun Y, Liu T, Xu X, Guo J, Gong Z, Sun H and Xu R: Prognostic biomarker SYK and its correlation with immune infiltrates in glioma. Exp Ther Med 26: 499, 2023.
APA
Wang, C., Liu, P., Sun, Y., Liu, T., Xu, X., Guo, J. ... Xu, R. (2023). Prognostic biomarker SYK and its correlation with immune infiltrates in glioma. Experimental and Therapeutic Medicine, 26, 499. https://doi.org/10.3892/etm.2023.12198
MLA
Wang, C., Liu, P., Sun, Y., Liu, T., Xu, X., Guo, J., Gong, Z., Sun, H., Xu, R."Prognostic biomarker SYK and its correlation with immune infiltrates in glioma". Experimental and Therapeutic Medicine 26.4 (2023): 499.
Chicago
Wang, C., Liu, P., Sun, Y., Liu, T., Xu, X., Guo, J., Gong, Z., Sun, H., Xu, R."Prognostic biomarker SYK and its correlation with immune infiltrates in glioma". Experimental and Therapeutic Medicine 26, no. 4 (2023): 499. https://doi.org/10.3892/etm.2023.12198
Copy and paste a formatted citation
x
Spandidos Publications style
Wang C, Liu P, Sun Y, Liu T, Xu X, Guo J, Gong Z, Sun H and Xu R: Prognostic biomarker SYK and its correlation with immune infiltrates in glioma. Exp Ther Med 26: 499, 2023.
APA
Wang, C., Liu, P., Sun, Y., Liu, T., Xu, X., Guo, J. ... Xu, R. (2023). Prognostic biomarker SYK and its correlation with immune infiltrates in glioma. Experimental and Therapeutic Medicine, 26, 499. https://doi.org/10.3892/etm.2023.12198
MLA
Wang, C., Liu, P., Sun, Y., Liu, T., Xu, X., Guo, J., Gong, Z., Sun, H., Xu, R."Prognostic biomarker SYK and its correlation with immune infiltrates in glioma". Experimental and Therapeutic Medicine 26.4 (2023): 499.
Chicago
Wang, C., Liu, P., Sun, Y., Liu, T., Xu, X., Guo, J., Gong, Z., Sun, H., Xu, R."Prognostic biomarker SYK and its correlation with immune infiltrates in glioma". Experimental and Therapeutic Medicine 26, no. 4 (2023): 499. https://doi.org/10.3892/etm.2023.12198
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