Thymoquinone hydrazone derivatives cause cell cycle arrest in p53-competent colorectal cancer cells

  • Authors:
    • André Wirries
    • Sandra Breyer
    • Karl Quint
    • Rainer Schobert
    • Matthias Ocker
  • View Affiliations

  • Published online on: March 1, 2010
  • Pages: 369-375
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Thymoquinone (TQ), the major compound of black seed oil, has been shown to induce pro-apoptotic signaling pathways in various human cancer models. Although TQ is commonly used in traditional medicine, its use in humans is limited due to its chemical properties and poor membrane penetration capacity. We therefore attached saturated and unsaturated fatty acid residues to TQ and evaluated the effect on cell proliferation, apoptosis and underlying signaling pathways in HCT116 and HCT116p53−/− colon cancer and HepG2 hepatoma cells in vitro. Treatment with thymoquinone-4-α-linolenoylhydrazone (TQ-H-10) or thymoquinone-4-palmitoylhydrazone (TQ-H-11) induced a cytostatic effect, particularly in p53-competent HCT116 cells, mediated by an up-regulation of p21cip1/waf1 and a down-regulation of cyclin E, and associated with an S/G2 arrest of the cell cycle. Cells lacking p53 (HCT116p53−/−) or HepG2 liver cancer cells showed only a minor response to TQ-H-10. These findings demonstrate that derivatives of TQ inhibit cell proliferation dependent on p53 status by activating the cell cycle inhibitor p21cip1/waf1 at lower concentrations than unmodified TQ. Structural modifications can therefore contribute to the further clinical development of TQ.


Colorectal cancer still represents a major medical challenge. Besides improving current available therapies, new treatment methods must be evaluated in order to provide improved outcomes for patients with advanced stages of the disease. A variety of plant-derived drugs have recently been explored for anticancer efficacy (1). It has been demonstrated that thymoquinone (TQ), which is the major compound of black seed (Nigella sativa) oil, traditionally used in Mediterranean and Arab medicine, possesses significant anticancer effects in various cancer models (2).

We previously showed that TQ induces apoptosis through p53-dependent pathways in human colon cancer cells and animal models (3,4). Although LD50 values for TQ in mice and rats indicate that high doses are tolerable in vivo (5), the high concentrations required impair these positive effects. In addition, due to its chemical structure (2-isopropyl-5-methylbenzo-1,4-quinone), TQ is unstable under physiologic conditions and in aqueous solutions, and shows only a low capacity to penetrate through biologic membranes. Recently, we demonstrated that the chemical modification of TQ by attachment of saturated and unsaturated fatty acid side chains enhanced the biological efficacy of TQ by increasing ROS production and inducing apoptosis in HL-60 leukaemia and 518A2 melanoma cells (6). Besides having a cytotoxic effect, TQ has been demonstrated to interfere with the cell cycle by inhibiting the activity of polo-like kinase 1 (PLK1), which is a key regulator of mitosis progression and is itself regulated by p53 (7).

Based on these findings, we developed further TQ derivatives which, in the present study, were investigated for their cell cycle regulating activity in HCT116 colon cancer cells and the human hepatoma cell line HepG2. Dependent on p53 status, these new molecules induced a cytostatic effect at low concentrations by the up-regulation of p21cip1/waf1 and the suppression of cyclin E.

Materials and methods

Design and synthesis of thymoquinone derivatives

The thymoquinone hydrazones (TQ-H) were prepared from TQ and α-linolenic acid or hexadecanoic acid, respectively, according to a previously applied general procedure (6).

Cell growth and treatment

Human HCT116 colon cancer cells (wild-type and derivatives lacking p53) and human HepG2 hepatocellular carcinoma cells were cultivated in RPMI-1640 medium supplemented with 10% fetal bovine serum (FBS), 1% penicillin and 0.5% streptomycin in an atmosphere of 5% CO2 at 37°C. Cell cultures were grown on Nunc EasyFlasks (Thermo Fisher Scientific, Roskilde, Denmark). Cell culture media and supplements were obtained from Biochrom, Berlin, Germany. Cell lines were obtained from the German Collection of Microorganisms and Cell Cultures (DSMZ, Braunschweig, Germany); HCT116p53−/− cells were a gift from B. Vogelstein (Johns Hopkins University, Baltimore, MD, USA).

For 24–72 h of treatment, 105 or 5×104 cells were seeded in 6-well plates and allowed to adhere overnight. TQ derivatives were added at different concentrations (0.01–10 μM) for the indicated time points.

Cell number and cell cycle analysis

Treated cells were washed with phosphate-buffered saline (PBS; Biochrom) and lysed by incubation with trypsin/EDTA (Biochrom). Cell number was determined by counting the viable cells after trypan blue staining in a Neubauer chamber as described previously (8). Apoptosis and DNA content were determined by flow cytometry on a FACSCalibur fluorescence activated cell sorter (BD Bioscience, Heidelberg, Germany) after staining with hypotonic propidium iodide solution (0.1% sodium citrate, 0.1% Triton X-100 and 50 μg/ml propidium iodide; all from Sigma, Deisenhofen, Germany) as described previously (8). For each sample, 10,000 events were collected, and the percentage of cells with a subdiploid DNA content in different phases of the cell cycle was determined using CellQuest software (BD Bioscience). Results displayed in the graphs and diagrams are the mean and standard deviation of three independent experiments.

Protein extraction and Western blot analysis

Total protein was extracted after treatment under the indicated conditions using Jie's protein extraction buffer as described previously (9). Proteins were quantified using the Pierce BCA Protein Assay kit (Thermo Scientific, Rockford, IL, USA) according to the manufacturer's protocol. Samples were subjected to gel electrophoresis on NuPAGE Bis-Tris Gels (Invitrogen, Carlsbad, CA, USA) for 50 min at 200 V and 125 mA. Proteins were then transferred to a nitrocellulose transfer membrane (Whatman, Dassel, Germany) at 90 V for 30 min. Membranes were blocked at 4°C overnight using PBS with 0.1% Tween-20 and 5% low fat milk powder, and then probed with primary antibodies (Table I) for 90 min at room temperature (RT). Membranes were washed three times with blocking buffer and incubated with appropriate secondary antibodies for 1 h at RT (Table I). Reactive bands were visualized using enhanced chemiluminescence (ECL) and exposure to X-ray films. Densitometry analysis was performed using GelScan 5 software (BioSciTec, Frankfurt, Germany). All membranes were stripped with glycine-buffer (pH 2.0) and reprobed with an anti-β-actin antibody to show equal loading of the lanes.

Table I.

Western blot antibodies.

Table I.

Western blot antibodies.

AntigenManufacturer; DilutionSecond antibody; Dilution
p21cip1/waf1BD Bioscience, mouse monoclonal; 1:500Mouse, 1:1000
p53BD Bioscience, mouse monoclonal; 1:500Mouse; 1:1000
Cyclin AAbcam, mouse monoclonal; 1:500Mouse; 1:1000
Cyclin DAbcam, rabbit monoclonal; 1:200Rabbit; 1:1000
Cyclin EAbcam, rabbit polyclonal; 1:200Rabbit; 1:1000
β-actinSigma, mouse monoclonal; 1:2000Mouse; 1:1000
RNA extraction, cDNA synthesis and quantitative real-time PCR

Total RNA was extracted using peqGOLD RNA Pure (Peqlab, Erlangen, Germany) according to the manufacturer's instructions. cDNA synthesis was performed as described previously using oligo(dT)15 primer and random hexamer primer (both from Promega, Mannheim, Germany) with 100 U SuperScript II reverse transcriptase (Invitrogen). Relative transcript levels were quantified by real-time RT-PCR using 2 μl of template cDNA on a thermal cycler system (CFX96 Real Time System, C1000 Thermal Cycler; BioRad). Quantitect Primers for human CCNA2, CCND2, CCNE2, TP53, CDKN1A as well as GAPDH were obtained from Qiagen (Hilden, Germany). PCR was performed with the Absolute SYBR Green Fluorescein Mix (Thermo Scientific, ABgene House, Epsom, Surrey, UK) according to the manufacturer's instructions. Data were analyzed with Bio-Rad CFX Manager software. Results were normalized to GAPDH levels. Samples were analyzed in duplicate.

Statistical analysis

Significance was calculated using the t-test for paired samples. P<0.05 was regarded as significant.


Thymoquinone hydrazone derivatives inhibit proliferation of human colon cancer cells in vitro

Human HCT116 colon cancer cells and the derivative lacking p53 (HCT116p53−/−), as well as the human HepG2 liver cancer cell line, were exposed to different concentrations of thymoquinone hydrazone derivatives (TQ-H) for 24–96 h at concentrations of 0.1 to 10 μM, thus not exceeding cytotoxic doses (IC50, 40 μM), as reported previously (10). As shown in Fig. 2, the viable cell count revealed significant effects of the two investigated TQ-H derivatives.

HCT116 cells proved to be most sensitive to treatment with either thymoquinone-4-α-linolenoylhydrazone (TQ-H-10) or thymoquinone-4-palmitoylhydrazone (TQ-H-11) (Fig. 2A and D). At 10 μM, both compounds significantly decreased the number of viable cells to 24% of the untreated controls for TQ-H-10 and 45% for TQ-H-11 after 96 h. Lower concentrations also reduced cell proliferation in this cell line to 65 and 80% at 1 and 0.1 μM, respectively, for TQ-H-10, and to ∼75% for TQ-H-11. In contrast, reduction in cell proliferation was less pronounced for HCT116p53−/− cells (Fig. 2B and E). In these cells, only 10 μM of TQ-H-10 led to a decrease in cell number of ∼58% after 72 h and 72% after 96 h; lower concentrations of TQ-H-10 did not affect cell proliferation. Surprisingly, TQ-H-11 was ineffective even at 10 μM. A similar pattern was observed for the human HepG2 liver cancer cell line (Fig. 2C and F). Only 10 μM of TQ-H-10 led to a significant decrease in cell number at 48–96 h, ranging from 65 to 75% of the untreated controls. Lower concentrations of TQ-H-10 as well as all tested concentrations of TQ-H-11 were ineffective.

TQ-H derivatives induce changes in the distribution of cell cycle phases

Cell cycle distribution and apoptosis were determined by flow cytometry after propidium iodide staining. In parallel to cell counting experiments, HCT116 cells proved to be most sensitive to treatment with 10 μM TQ-H-10 or TQ-H-11 (Fig. 3A and D). Both compounds induced a significant shift in the cell cycle distribution towards the S/G2 phase after 72 and 96 h. In detail, the amount of cells in the S/G2 phase increased from 67.8 to 89.1% and from 62.4 to 88.6% after 72 or 96 h of treatment with TQ-H-10. TQ-H-11 increased this parameter from 72.3 to 88.1% and from 49.2 to 84.5%, respectively. Representative flow cytometry scans are shown in Fig. 4. Similar to the results described above, neither TQ-H-10 nor TQ-H-11 influenced the distribution of the cell cycle at 10 μM in either the HCT116p53−/− (Fig. 3B and C) or HepG2 cells (Fig. 3E and F).

Molecular analysis of cell cycle regulating factors after TQ-H treatment

To investigate which factors are involved in TQ-H-mediated cell cycle arrest and to determine the influence of p53 status on the observed results, we performed quantitative real-time RT-PCR and Western blotting on all tested cell lines after 48 and 72 h of incubation with 10 μM TQ-H-10 and TQ-H-11.

Compared to untreated controls, TQ-H-10 induced a significant increase in the mRNA levels of p21cip1/waf1 and a pronounced down-regulation of cyclin E in HCT116 cells (Fig. 5A). TQ-H-11 led only to a down-regulation of cyclin D after 72 h, while all other parameters remained unchanged. In line with the view that p21cip1/waf1 is a transcriptional target of p53 (11), no significant increase in p21cip1/waf1 was observed in HCT116p53−/− cells (Fig. 5B). However, both compounds led to a suppression of cyclin D mRNA levels after 48 h (TQ-H-11) or 72 h (TQ-H-10). In HepG2 cells, which showed the greatest resistance to TQ-H treatments, no significant down-regulation of cell cycle-associated genes was observed (Fig. 5C). In this cell line, the increased expression of p53 and cyclins A, D and E was observed, which supports the findings regarding cell death and cell proliferation.

To confirm these results, quantitative Western blotting was performed (Fig. 6). In line with the previously described findings, the most resistant HepG2 cells showed a pronounced down-regulation of p21cip1/waf1 and p53, while cyclin levels were mostly unaffected at 48 h. In the sensitive HCT116 cell line, we observed no increase in p21cip1/waf1 protein, but found a pronounced down-regulation of cyclins A and E, particularly after 72 h of incubation with both TQ derivatives. At the protein level, HCT116p53−/− cells also showed a down-regulation of cyclins A and E after a 72-h treatment with 10 μM TQ-H-11, while other parameters remained largely unaffected. Again, expression of p21cip1/waf1 was unchanged in these p53-deficient cells after treatment with either of the TQ compounds.


Black seed (Nigella sativa) and its oil have traditionally been used in Arab and Mediterranean medicine for a variety of diseases, and have also become popular as food supplements in Western countries. Thymoquinone (TQ) was identified as the major active constituent of black seed essential oil (1), and has been demonstrated to exert anticancer effects in various models of human cancer (2,3,10,1214). Several molecular pathways of TQ activity in cancer cells have recently been described, for example, activation of caspases or p53-dependent mechanisms of cell growth control (4,1517). Although these pre-clinical and experimental data provide encouraging evidence for a clinical application of TQ, its use in humans is limited due to its low chemical stability and poor solubility in aqueous solutions. We previously showed that the modification of TQ structure by attaching fatty acids enhances the pro-apoptotic and antiproliferative properties of the molecule (6). In the present study, we investigated the molecular effects associated with unsaturated (TQ-H-10) and saturated (TQ-H-11) fatty acid modifications of TQ in the human HCT116 colorectal cancer cell line and in a derivative lacking p53 (HCT116p53−/−), as well as in the human HepG2 hepatocellular carcinoma cell line (p53 wild-type).

Our previous work showed that TQ effectively inhibits the proliferation of HCT116 cells at concentrations of 40 μM or higher (4,10). Modification of TQ with an unsaturated fatty acid enhanced this effect and resulted in significant growth inhibition, even at 10 μM, in p53-competent HCT116 cells (Fig. 2). This was associated with an increase in the S/G2 cell population (Figs. 3 and 4). Notably, this effect was not observed in either HCT116p53−/− or HepG2 cells, indicating a differential intracellular metabolism in liver and colon cell types as well as a dependency on p53 to inhibit cell cycle progression. Although previous studies have demonstrated a good apoptotic response to TQ in p53-deficient cells as well (15,17), these results were obtained at higher concentrations of native TQ, which may also induce a non-specific cytotoxic reaction, for example, due to formation of oxidative stress which we demonstrated previously (6).

A molecular pathway analysis by quantitative RT-PCR and Western blotting revealed stable expression of the cell cycle inhibitor p21cip1/waf1 in responsive HCT116 cells, but not in the other investigated cell lines (Figs. 5 and 6). Although an increase in p53 mRNA was observed in HepG2 cells, this up-regulation was not observed at the protein level, indicating a post-transcriptional processing of p53 mRNA (18). The observed growth inhibition and redistribution of cells to the S/G2 phase was confirmed using PCR based on the observed strong down-regulation of mRNA for cyclins D and E. Notably, TQ has previously been shown to induce G0/G1 arrest in various cancer cell lines (12,16), suggesting a different interaction caused by the unsaturated fatty acid residue in TQ-H-10. Although this observation is in line with the known cell cycle inhibition properties of p21cip1/waf1 (19,20), the down-regulation, particularly of cyclin E, which is crucial for progression from the G1 to S phase (20,21), is in contrast to our results. However, recent reports suggest the possibility for cells to enter the S phase even when lacking CDK2/cyclin E complex activity (19,20,22), and knockout mice for either cyclin E or CDK2 also showed normal development (23). It is currently assumed that other cyclins can rescue the lack of CDK2/cyclin E in this setting, and we observed a slight increase in cyclin A expression, which might be sufficient to promote cell cycle progression. As cyclin E overexpression is commonly observed in human malignancies and has also been proposed as a prognostic marker (21,22,2428), our findings indicate a beneficial effect, especially on cyclin E-positive tumors, by treatment with TQ-H derivatives. This effect is enhanced by covalent linkage to unsaturated fatty acid structures, resulting in extensive antiproliferative effects as described above.


The excellent technical assistant of Astrid Taut and Isabel Zeitträger is gratefully acknowledged.



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March-April 2010
Volume 1 Issue 2

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Wirries A, Breyer S, Quint K, Schobert R and Ocker M: Thymoquinone hydrazone derivatives cause cell cycle arrest in p53-competent colorectal cancer cells . Exp Ther Med 1: 369-375, 2010
Wirries, A., Breyer, S., Quint, K., Schobert, R., & Ocker, M. (2010). Thymoquinone hydrazone derivatives cause cell cycle arrest in p53-competent colorectal cancer cells . Experimental and Therapeutic Medicine, 1, 369-375.
Wirries, A., Breyer, S., Quint, K., Schobert, R., Ocker, M."Thymoquinone hydrazone derivatives cause cell cycle arrest in p53-competent colorectal cancer cells ". Experimental and Therapeutic Medicine 1.2 (2010): 369-375.
Wirries, A., Breyer, S., Quint, K., Schobert, R., Ocker, M."Thymoquinone hydrazone derivatives cause cell cycle arrest in p53-competent colorectal cancer cells ". Experimental and Therapeutic Medicine 1, no. 2 (2010): 369-375.