|
1
|
Louis DN, Ohgaki H, Wiestler OD and
Cavenee WK: WHO Classification of Tumours of the Central Nervous
System. Revised 4th Edition. International Agency for Research on
Cancer. Lyon, pp106-114, 2016.
|
|
2
|
Rogers HA, Kilday J-P, Mayne C, Ward J,
Adamowicz-Brice M, Schwalbe EC, Clifford SE, Coyle B and Grundy RG:
Supratentorial and spinal pediatric ependymomas display a
hypermethylated phenotype which includes the loss of tumor
suppressor genes involved in the control of cell growth and death.
Acta Neuropathol. 123:711–725. 2012.PubMed/NCBI View Article : Google Scholar
|
|
3
|
Kudo H, Oi S, Tamaki N, Nishida Y and
Matsumoto S: Ependymoma diagnosed in the first year of life in
Japan in collaboration with the International Society for Pediatric
Neurosurgery. Childs Nerv Syst. 6:375–378. 1990.PubMed/NCBI View Article : Google Scholar
|
|
4
|
Horn B, Heideman R, Geyer R, Pollack I,
Packer R, Goldwein J, Tomita T, Schomberg P, Ater J, Luchtman-Jones
L, et al: A multi-institutional retrospective study of intracranial
ependymoma in children: Identification of risk factors. J Pediatr
Hematol Oncol. 21:203–211. 1999.PubMed/NCBI View Article : Google Scholar
|
|
5
|
Rubio MP, Correa KM, Ramesh V, MacCollin
MM, Jac oby LB, von Deimling A, Gusella JF and Louis DN: Analysis
of the neurofibromatosis 2 gene in human ependymomas and
astrocytomas. Cancer Res. 54:45–47. 1994.PubMed/NCBI
|
|
6
|
Taylor MD, Poppleton H, Fuller C, Su X,
Liu Y, Jensen P, Magdaleno S, Dalton J, Calabrese C, Board J, et
al: Radial glia cells are candidate stem cells of ependymoma.
Cancer Cell. 8:323–335. 2005.PubMed/NCBI View Article : Google Scholar
|
|
7
|
Mack SC, Witt H, Piro RM, Gu L, Zuyderduyn
S, Stütz AM, Wang X, Gallo M, Garzia L, Zayne K, et al: Epigenomic
alterations define lethal CIMP-positive ependymomas of infancy.
Nature. 506:445–450. 2014.PubMed/NCBI View Article : Google Scholar
|
|
8
|
Pajtler KW, Witt H, Sill M, Jones DTW,
Hovestadt V, Kratochwil F, Wani K, Tatevossian R, Punchihewa C,
Johann P, et al: Molecular classification of ependymal tumors
across All CNS compartments, histopathological grades, and age
groups. Cancer Cell. 27:728–743. 2015.PubMed/NCBI View Article : Google Scholar
|
|
9
|
Ellison DW, Kocak M, Figarella-Branger D,
Felice G, Catherine G, Pietsch T, Frappaz D, Massimino M, Grill J,
Boyett JM and Grundy RG: Histopathological grading of pediatric
ependymoma: Reproducibility and clinical relevance in European
trial cohorts. J Negat Results Biomed. 10(7)2011.PubMed/NCBI View Article : Google Scholar
|
|
10
|
Du P, Zhang X, Huang CC, Jafari N, Kibbe
WA, Hou L and Lin SM: Comparison of Beta-value and M-value methods
for quantifying methylation levels by microarray analysis. BMC
Bioinformatics. 11(587)2010.PubMed/NCBI View Article : Google Scholar
|
|
11
|
Chen J, Bardes EE, Aronow BJ and Jegga AG:
ToppGene Suite for gene list enrichment analysis and candidate gene
prioritization. Nucleic Acids Res. 37:W305–W311. 2009.PubMed/NCBI View Article : Google Scholar
|
|
12
|
Agilent Technologies: SureSelect-How it
Works. http://www.genomics.agilent.com/article.jsp?pageId=3083.
Accessed Nov 10, 2020.
|
|
13
|
Li H and Durbin R: Fast and accurate short
read alignment with Burrows-Wheeler transform. Bioinformatics.
25:1754–1760. 2009.PubMed/NCBI View Article : Google Scholar
|
|
14
|
DePristo MA, Banks B, Poplin R, Garimella
KV, Maguire JR, Hartl C, Philippakis AA, del Angel G, Rivas MA,
Hanna M, et al: A framework for variation discovery and genotyping
using next-generation DNA sequencing data. Nat Genet. 43:491–498.
2011.PubMed/NCBI View
Article : Google Scholar
|
|
15
|
Van der Auwera GA, Carneiro MO, Hartl C,
Poplin R, Del Angel G, Levy-Moonshine A, Jordan T, Shakir K, Roazen
D, Thibault T, et al: From FastQ data to high confidence variant
calls: The Genome Analysis Toolkit best practices pipeline. Curr
Protoc Bioinformatics. 43:11.10.1–11.10.33. 2013.PubMed/NCBI View Article : Google Scholar
|
|
16
|
Koboldt DC, Zhang Q, Larson DE, Shen D,
McLellan MD, Lin L, Miller CA, Mardis ER, Ding L and Wilson RK:
VarScan 2: Somatic mutation and copy number alteration discovery in
cancer by exome sequencing. Genome Res. 22:568–576. 2012.PubMed/NCBI View Article : Google Scholar
|
|
17
|
Wang K, Li M and Hakonarson H: ANNOVAR:
Functional annotation of genetic variants from high-throughput
sequencing data. Nucleic Acids Res. 38(e164)2010.PubMed/NCBI View Article : Google Scholar
|
|
18
|
Trapnell C, Pachter L and Salzberg SL:
TopHat: Discovering splice junctions with RNA-Seq. Bioinformatics.
25:1105–1111. 2009.PubMed/NCBI View Article : Google Scholar
|
|
19
|
Trapnell C, Williams BA, Pertea G,
Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ and Pachter
L: Transcript assembly and quantification by RNA-Seq reveals
unannotated transcripts and isoform switching during cell
differentiation. Nat Biotechnol. 28:511–515. 2010.PubMed/NCBI View Article : Google Scholar
|
|
20
|
Koch CM and Wagner W:
Epigenetic-aging-signature to determine age in different tissues.
Aging (Albany NY). 3:1018–1027. 2011.PubMed/NCBI View Article : Google Scholar
|
|
21
|
Rousseau E, Palm T, Scaravilli F, Ruchoux
M-M, Figarella-Branger D, Salmon I, Ellison D, Lacroix C, Chapon F,
Mikol J, et al: Trisomy 19 ependymoma, a newly recognized
genetico-histological association, including clear cell ependymoma.
Mol Cancer. 6(47)2007.PubMed/NCBI View Article : Google Scholar
|
|
22
|
Wu J, Armstrong TS and Gilbert MR: Biology
and management of ependymomas. Neuro Oncol. 18:902–913.
2016.PubMed/NCBI View Article : Google Scholar
|
|
23
|
Montavon T and Duboule D: Chromatin
organization and global regulation of Hox gene clusters. Philos
Trans R Soc Lond B Biol Sci. 368(20120367)2013.PubMed/NCBI View Article : Google Scholar
|
|
24
|
Kurscheid S, Pierre Bady P, Sciuscio D,
Samarzija I, Shay T, Vassallo I, Criekinge WV, Daniel RT, van den
Bent MJ, Marosi C, et al: Chromosome 7 gain and DNA
hypermethylation at the HOXA10 locus are associated with expression
of a stem cell related HOX-signature in glioblastoma. Genome Biol.
16(16)2015.PubMed/NCBI View Article : Google Scholar
|
|
25
|
Korshunov A, Neben K, Wrobel G, Tews B,
Benner A, Hahn M, Golanov A and Lichter P: Gene expression patterns
in ependymomas correlate with tumor location, grade, and patient
age. Am J Pathol. 163:1721–1727. 2003.PubMed/NCBI View Article : Google Scholar
|
|
26
|
Gu S, Gu W, Shou J, Xiong J, Liu X, Sun B,
Yang D and Xie R: The molecular feature of HOX gene family in the
intramedullary spinal tumors. Spine (Phila Pa 1976). 42:291–297.
2017.PubMed/NCBI View Article : Google Scholar
|
|
27
|
Korshunov A, Witt H, Hielscher T, Benner
A, Remke M, Ryzhova M, Milde T, Bender S, Wittmann A, Schöttler A,
et al: Molecular staging of intracranial ependymoma in children and
adults. J Clin Oncol. 28:3182–3190. 2010.PubMed/NCBI View Article : Google Scholar
|
|
28
|
Parker M, Mohankumar KM, Punchihewa C,
Weinlich R, Dalton JD, Li Y, Lee R, Tatevossian RG, Phoenix TN,
Thiruvenkatam R, et al: C11orf95-RELA fusions drive oncogenic
NF-kappaB signalling in ependymoma. Nature. 506:451–455.
2014.PubMed/NCBI View Article : Google Scholar
|
|
29
|
Karakoula K, Jacques TS, Phipps KP,
Harkness W, Thompson D, Harding BN, Darling JL and Warr TJ:
Epigenetic genome-wide analysis identifies BEX1 as a candidate
tumour suppressor gene in paediatric intracranial ependymoma.
Cancer Lett. 346:34–44. 2014.PubMed/NCBI View Article : Google Scholar
|
