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Article Open Access

Prognosis genes in gastric adenocarcinoma identified by cross talk genes in disease‑related pathways

  • Authors:
    • Lizhi Zhao
    • Haichun Lei
    • Li Shen
    • Jiquan Tang
    • Zhiwei Wang
    • Weisong Bai
    • Feng Zhang
    • Shouli Wang
    • Weihua Li
  • View Affiliations / Copyright

    Affiliations: Department of Digestive Surgery, Hanzhong Central Hospital, Hanzhong, Shaanxi 723000, P.R. China, Center Lab, The People's Hospital of Gansu, Lanzhou, Gansu 730000, P.R. China
    Copyright: © Zhao et al. This is an open access article distributed under the terms of Creative Commons Attribution License.
  • Pages: 1232-1240
    |
    Published online on: June 6, 2017
       https://doi.org/10.3892/mmr.2017.6699
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Abstract

The aim of the present study was to investigate the prognostic value of genes that participate in the development of gastric adenocarcinoma, via exploring gene cross talk in disease‑related pathways. Differentially expressed genes (DEGs) in the gastric samples were identified by analyzing the expression data downloaded from the GEO database. The DEGs were subjected to the human protein‑protein interaction (PPI) network to construct the PPI network of DEGs, which was then used for the identification of key genes in cancer samples via the expression deviation score and degree in the network. A total of 635 DEGs, including 432 downregulated and 203 upregulated ones were screened in the gastric adenocarcinomas samples. The PPI network of DEGs comprised 590 DEGs and 4,299 interaction pairs. A total of 200 key genes were obtained, which were significantly enriched in six downregulated and six upregulated pathways. Cross talk genes in the connected pathways were analyzed, and the Kyoto Encyclopedia of Genes and Genomes pathways hsa00980 (Metabolism of xenobiotics by cytochrome P450) and hsa00982 (Drug metabolism) were reported to share 8 cross talk genes: ADH7, ALDH3A1, GSTA1, GSTA2, UGT2B17, UGT2B10, ADH1B and CYP2C18. Among all cross talk genes, ADH7, ALDH3A1 and CLDN3 were the most specific genes. The high‑ and low‑risk samples identified by the prognosis model presented a remarkable difference in total survival time, indicating its robustness and sensitivity as the prognosis genes for gastric adenocarcinoma. ADH7, ALDH3A1, GSTA1, GSTA2, UGT2B17, UGT2B10, ADH1B, CYP2C18ADH7, ALDH3A1 and CLDN3 may be used as the prognosis markers and target biomarkers for chemotherapies in gastric adenocarcinoma.
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Copy and paste a formatted citation
Spandidos Publications style
Zhao L, Lei H, Shen L, Tang J, Wang Z, Bai W, Zhang F, Wang S and Li W: Prognosis genes in gastric adenocarcinoma identified by cross talk genes in disease‑related pathways. Mol Med Rep 16: 1232-1240, 2017.
APA
Zhao, L., Lei, H., Shen, L., Tang, J., Wang, Z., Bai, W. ... Li, W. (2017). Prognosis genes in gastric adenocarcinoma identified by cross talk genes in disease‑related pathways. Molecular Medicine Reports, 16, 1232-1240. https://doi.org/10.3892/mmr.2017.6699
MLA
Zhao, L., Lei, H., Shen, L., Tang, J., Wang, Z., Bai, W., Zhang, F., Wang, S., Li, W."Prognosis genes in gastric adenocarcinoma identified by cross talk genes in disease‑related pathways". Molecular Medicine Reports 16.2 (2017): 1232-1240.
Chicago
Zhao, L., Lei, H., Shen, L., Tang, J., Wang, Z., Bai, W., Zhang, F., Wang, S., Li, W."Prognosis genes in gastric adenocarcinoma identified by cross talk genes in disease‑related pathways". Molecular Medicine Reports 16, no. 2 (2017): 1232-1240. https://doi.org/10.3892/mmr.2017.6699
Copy and paste a formatted citation
x
Spandidos Publications style
Zhao L, Lei H, Shen L, Tang J, Wang Z, Bai W, Zhang F, Wang S and Li W: Prognosis genes in gastric adenocarcinoma identified by cross talk genes in disease‑related pathways. Mol Med Rep 16: 1232-1240, 2017.
APA
Zhao, L., Lei, H., Shen, L., Tang, J., Wang, Z., Bai, W. ... Li, W. (2017). Prognosis genes in gastric adenocarcinoma identified by cross talk genes in disease‑related pathways. Molecular Medicine Reports, 16, 1232-1240. https://doi.org/10.3892/mmr.2017.6699
MLA
Zhao, L., Lei, H., Shen, L., Tang, J., Wang, Z., Bai, W., Zhang, F., Wang, S., Li, W."Prognosis genes in gastric adenocarcinoma identified by cross talk genes in disease‑related pathways". Molecular Medicine Reports 16.2 (2017): 1232-1240.
Chicago
Zhao, L., Lei, H., Shen, L., Tang, J., Wang, Z., Bai, W., Zhang, F., Wang, S., Li, W."Prognosis genes in gastric adenocarcinoma identified by cross talk genes in disease‑related pathways". Molecular Medicine Reports 16, no. 2 (2017): 1232-1240. https://doi.org/10.3892/mmr.2017.6699
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