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Microarray and bioinformatics analyses of gene expression profiles in BALB/c murine macrophage polarization

  • Authors:
    • Li Jiang
    • Xueqin Li
    • Yingying Zhang
    • Mengying Zhang
    • Zongsheng Tang
    • Kun Lv
  • View Affiliations / Copyright

    Affiliations: Department of Pharmacy, Institute of Dermatology, Chinese Academy of Medical Sciences, Nanjing, Jiangsu 210001, P.R. China, Central Laboratory of Yijishan Hospital, Wannan Medical College, Wuhu, Anhui 241001, P.R. China, Laboratory Medicine of Yijishan Hospital, Wannan Medical College, Wuhu, Anhui 241001, P.R. China
    Copyright: © Jiang et al. This is an open access article distributed under the terms of Creative Commons Attribution License.
  • Pages: 7382-7390
    |
    Published online on: September 19, 2017
       https://doi.org/10.3892/mmr.2017.7511
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Abstract

Macrophages possess the hallmark feature of plasticity, allowing them to undergo a dynamic transition between M1 and M2 polarized phenotypes. The aim of the present study was to screen for differentially-expressed genes (DEGs) that were associated with BALB/c murine macrophage polarization. The transcription profiles of three M1 and three M2 samples were obtained using microarray analysis. Based on the threshold of fold‑change >2.0 and P‑value <0.05, a total of 1,253 DEGs were identified, of which 696 were upregulated and 557 downregulated in M1 macrophages compared with M2 macrophages. Gene Ontology (GO) function and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed. A gene‑gene interaction network of the DEGs was constructed using the Search Tool for the Retrieval of Interacting Genes database. GO annotation identified three categories: Cellular component, molecular function and biological process, with 34 and 40 enrichment terms consisting of upregulated and downregulated DEGs, respectively. GO enrichment analysis of DEGs was primarily associated with protein binding, response to stimulus, cell differentiation, and regulation of biological process. KEGG enrichment identified 15 and four pathways involving upregulated and downregulated DEGs, respectively. Signaling pathway analysis revealed that these DEGs were mainly involved in apoptosis, hypoxia‑inducible factor (HIF) 1a pathway, innate immune system, tumor necrosis factor (TNF) signaling pathway, cytokine‑cytokine receptor interaction, and other signal transduction pathways. Interaction network analysis indicated that genes including TNF, interleukin (IL)‑6, IL‑1β, suppressor of cytokine signaling 3, nitric oxide synthase 2, HIF1a may serve key roles in macrophage polarization. The present study provided new insights into the role of genes in macrophage differentiation and polarization.
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Copy and paste a formatted citation
Spandidos Publications style
Jiang L, Li X, Zhang Y, Zhang M, Tang Z and Lv K: Microarray and bioinformatics analyses of gene expression profiles in BALB/c murine macrophage polarization. Mol Med Rep 16: 7382-7390, 2017.
APA
Jiang, L., Li, X., Zhang, Y., Zhang, M., Tang, Z., & Lv, K. (2017). Microarray and bioinformatics analyses of gene expression profiles in BALB/c murine macrophage polarization. Molecular Medicine Reports, 16, 7382-7390. https://doi.org/10.3892/mmr.2017.7511
MLA
Jiang, L., Li, X., Zhang, Y., Zhang, M., Tang, Z., Lv, K."Microarray and bioinformatics analyses of gene expression profiles in BALB/c murine macrophage polarization". Molecular Medicine Reports 16.5 (2017): 7382-7390.
Chicago
Jiang, L., Li, X., Zhang, Y., Zhang, M., Tang, Z., Lv, K."Microarray and bioinformatics analyses of gene expression profiles in BALB/c murine macrophage polarization". Molecular Medicine Reports 16, no. 5 (2017): 7382-7390. https://doi.org/10.3892/mmr.2017.7511
Copy and paste a formatted citation
x
Spandidos Publications style
Jiang L, Li X, Zhang Y, Zhang M, Tang Z and Lv K: Microarray and bioinformatics analyses of gene expression profiles in BALB/c murine macrophage polarization. Mol Med Rep 16: 7382-7390, 2017.
APA
Jiang, L., Li, X., Zhang, Y., Zhang, M., Tang, Z., & Lv, K. (2017). Microarray and bioinformatics analyses of gene expression profiles in BALB/c murine macrophage polarization. Molecular Medicine Reports, 16, 7382-7390. https://doi.org/10.3892/mmr.2017.7511
MLA
Jiang, L., Li, X., Zhang, Y., Zhang, M., Tang, Z., Lv, K."Microarray and bioinformatics analyses of gene expression profiles in BALB/c murine macrophage polarization". Molecular Medicine Reports 16.5 (2017): 7382-7390.
Chicago
Jiang, L., Li, X., Zhang, Y., Zhang, M., Tang, Z., Lv, K."Microarray and bioinformatics analyses of gene expression profiles in BALB/c murine macrophage polarization". Molecular Medicine Reports 16, no. 5 (2017): 7382-7390. https://doi.org/10.3892/mmr.2017.7511
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