|
1
|
Mirabelli G, Cannarile F, Bruni C, Vagelli
R, De Luca R and Carli L: One year in review 2015: Systemic lupus
erythematosus. Clin Exp Rheumatol. 33:414–425. 2015.PubMed/NCBI
|
|
2
|
Petri M: Review of classification criteria
for systemic lupus erythematosus. Rheum Dis Clin North Am.
31(245–254): vi2005.
|
|
3
|
Petri M: Epidemiology of systemic lupus
erythematosus. Best Pract Res Clin Rheumatol. 16:847–858. 2002.
View Article : Google Scholar : PubMed/NCBI
|
|
4
|
Ahmad YA and Bruce IN: Genetic
epidemiology: Systemic lupus erythematosus. Arthritis Res.
3:331–336. 2001. View
Article : Google Scholar : PubMed/NCBI
|
|
5
|
Mak A and Tay SH: Environmental factors,
toxicants and systemic lupus erythematosus. Int J Mol Sci.
15:16043–16056. 2014. View Article : Google Scholar : PubMed/NCBI
|
|
6
|
Mok CC, Kwok RC and Yip PS: Effect of
renal disease on the standardized mortality ratio and life
expectancy of patients with systemic lupus erythematosus. Arthritis
Rheum. 65:2154–2160. 2013. View Article : Google Scholar : PubMed/NCBI
|
|
7
|
Bodaño A, Amarelo J, González A,
Gómez-Reino JJ and Conde C: Novel DNASE I mutations related to
systemic lupus erythematosus. Arthritis Rheum. 50:4070–4071. 2004.
View Article : Google Scholar : PubMed/NCBI
|
|
8
|
Leng RX, Wang W, Cen H, Zhou M, Feng CC,
Zhu Y, Yang XK, Yang M, Zhai Y, Li BZ, et al: Gene-gene and
gene-sex epistatic interactions of MiR146a, IRF5, IKZF1, ETS1 and
IL21 in systemic lupus erythematosus. PLoS One. 7:e510902012.
View Article : Google Scholar : PubMed/NCBI
|
|
9
|
Wang C, Sandling JK, Hagberg N, Berggren
O, Sigurdsson S, Karlberg O, Rönnblom L, Eloranta ML and Syvänen
AC: Genome-wide profiling of target genes for the systemic lupus
erythematosus-associated transcription factors IRF5 and STAT4. Ann
Rheum Dis. 72:96–103. 2013. View Article : Google Scholar : PubMed/NCBI
|
|
10
|
Yang W, Shen N, Ye DQ, Liu Q, Zhang Y,
Qian XX, Hirankarn N, Ying D, Pan HF, Mok CC, et al: Genome-wide
association study in Asian populations identifies variants in ETS1
and WDFY4 associated with systemic lupus erythematosus. PLoS Genet.
6:e10008412010. View Article : Google Scholar : PubMed/NCBI
|
|
11
|
Remmers EF, Plenge RM, Lee AT, Graham RR,
Hom G, Behrens TW, de Bakker PI, Le JM, Lee HS, Batliwalla F, et
al: STAT4 and the risk of rheumatoid arthritis and systemic lupus
erythematosus. N Engl J Med. 357:977–986. 2007. View Article : Google Scholar : PubMed/NCBI
|
|
12
|
Ketelaar ME, Hofstra EM and Hayden MR:
What monozygotic twins discordant for phenotype illustrate about
mechanisms influencing genetic forms of neurodegeneration. Clin
Genet. 81:325–333. 2012. View Article : Google Scholar : PubMed/NCBI
|
|
13
|
Maiti S, Kumar KH, Castellani CA, O'Reilly
R and Singh SM: Ontogenetic de novo copy number variations (CNVs)
as a source of genetic individuality: Studies on two families with
MZD twins for schizophrenia. PLoS One. 6:e171252011. View Article : Google Scholar : PubMed/NCBI
|
|
14
|
Silva S, Martins Y, Matias A and
Blickstein I: Why are monozygotic twins different? J Perinat Med.
39:195–202. 2011. View Article : Google Scholar : PubMed/NCBI
|
|
15
|
Kondo S, Schutte BC, Richardson RJ, Bjork
BC, Knight AS, Watanabe Y, Howard E, de Lima RL, Daack-Hirsch S,
Sander A, et al: Mutations in IRF6 cause Van der Woude and
popliteal pterygium syndromes. Nat Genet. 32:285–289. 2002.
View Article : Google Scholar : PubMed/NCBI
|
|
16
|
Sobreira NL, Cirulli ET, Avramopoulos D,
Wohler E, Oswald GL, Stevens EL, Ge D, Shianna KV, Smith JP, Maia
JM, et al: Whole-genome sequencing of a single proband together
with linkage analysis identifies a Mendelian disease gene. PLoS
Genet. 6:e10009912010. View Article : Google Scholar : PubMed/NCBI
|
|
17
|
Petersen BS, Spehlmann ME, Raedler A,
Stade B, Thomsen I, Rabionet R, Rosenstiel P, Schreiber S and
Franke A: Whole genome and exome sequencing of monozygotic twins
discordant for Crohn's disease. BMC Genomics. 15:5642014.
View Article : Google Scholar : PubMed/NCBI
|
|
18
|
Tang J, Fan Y, Li H, Xiang Q, Zhang DF, Li
Z, He Y, Liao Y, Wang Y, He F, et al: Whole-genome sequencing of
monozygotic twins discordant for schizophrenia indicates multiple
genetic risk factors for schizophrenia. J Genet Genomics.
44:295–306. 2017. View Article : Google Scholar : PubMed/NCBI
|
|
19
|
Raczy C, Petrovski R, Saunders CT, Chorny
I, Kruglyak S, Margulies EH, Chuang HY, Källberg M, Kumar SA, Liao
A, et al: Isaac: Ultra-fast whole-genome secondary analysis on
Illumina sequencing platforms. Bioinformatics. 29:2041–2043. 2013.
View Article : Google Scholar : PubMed/NCBI
|
|
20
|
Cingolani P, Platts A, le Wang L, Coon M,
Nguyen T, Wang L, Land SJ, Lu X and Ruden DM: A program for
annotating and predicting the effects of single nucleotide
polymorphisms, SnpEff: SNPs in the genome of Drosophila
melanogaster strain w1118; iso-2; iso-3. Fly (Austin). 6:80–92.
2012. View Article : Google Scholar : PubMed/NCBI
|
|
21
|
Boeva V, Popova T, Bleakley K, Chiche P,
Cappo J, Schleiermacher G, Janoueix-Lerosey I, Delattre O and
Barillot E: Control-FREEC: A tool for assessing copy number and
allelic content using next-generation sequencing data.
Bioinformatics. 28:423–425. 2012. View Article : Google Scholar : PubMed/NCBI
|
|
22
|
Chen X, Schulz-Trieglaff O, Shaw R, Barnes
B, Schlesinger F, Källberg M, Cox AJ, Kruglyak S and Saunders CT:
Manta: Rapid detection of structural variants and indels for
germline and cancer sequencing applications. Bioinformatics.
32:1220–1222. 2016. View Article : Google Scholar : PubMed/NCBI
|
|
23
|
Smigielski EM, Sirotkin K, Ward M and
Sherry ST: DbSNP: A database of single nucleotide polymorphisms.
Nucleic Acids Res. 28:352–355. 2000. View Article : Google Scholar : PubMed/NCBI
|
|
24
|
1000 Genomes Project Consortium, . Auton
A, Brooks LD, Durbin RM, Garrison EP, Kang HM, Korbel JO, Marchini
JL, McCarthy S, McVean GA and Abecasis GR: A global reference for
human genetic variation. Nature. 526:68–74. 2015. View Article : Google Scholar : PubMed/NCBI
|
|
25
|
Ng PC and Henikoff S: SIFT: Predicting
amino acid changes that affect protein function. Nucleic Acids Res.
31:3812–3814. 2003. View Article : Google Scholar : PubMed/NCBI
|
|
26
|
Adzhubei IA, Schmidt S, Peshkin L,
Ramensky VE, Gerasimova A, Bork P, Kondrashov AS and Sunyaev SR: A
method and server for predicting damaging missense mutations. Nat
Methods. 7:248–249. 2010. View Article : Google Scholar : PubMed/NCBI
|
|
27
|
Robinson JT, Thorvaldsdóttir H, Winckler
W, Guttman M, Lander ES, Getz G and Mesirov JP: Integrative
genomics viewer. Nat Biotechnol. 29:24–26. 2011. View Article : Google Scholar : PubMed/NCBI
|
|
28
|
Thorvaldsdottir H, Robinson JT and Mesirov
JP: Integrative Genomics Viewer (IGV): High-performance genomics
data visualization and exploration. Brief Bioinform. 14:178–192.
2013. View Article : Google Scholar : PubMed/NCBI
|
|
29
|
Amberger JS, Bocchini CA, Schiettecatte F,
Scott AF and Hamosh A: OMIM.org: Online Mendelian Inheritance in
Man (OMIM®), an online catalog of human genes and
genetic disorders. Nucleic Acids Res. 43:D789–D798. 2015.
View Article : Google Scholar : PubMed/NCBI
|
|
30
|
Reumers J, De Rijk P, Zhao H, Liekens A,
Smeets D, Cleary J, Van Loo P, Van Den Bossche M, Catthoor K, Sabbe
B, et al: Optimized filtering reduces the error rate in detecting
genomic variants by short-read sequencing. Nat Biotechnol.
30:61–68. 2011. View
Article : Google Scholar : PubMed/NCBI
|
|
31
|
Baranzini SE, Mudge J, van Velkinburgh JC,
Khankhanian P, Khrebtukova I, Miller NA, Zhang L, Farmer AD, Bell
CJ, Kim RW, et al: Genome, epigenome and RNA sequences of
monozygotic twins discordant for multiple sclerosis. Nature.
464:1351–1356. 2010. View Article : Google Scholar : PubMed/NCBI
|
|
32
|
Chaiyasap P, Kulawonganunchai S,
Srichomthong C, Tongsima S, Suphapeetiporn K and Shotelersuk V:
Whole genome and exome sequencing of monozygotic twins with trisomy
21, discordant for a congenital heart defect and epilepsy. PLoS
One. 9:e1001912014. View Article : Google Scholar : PubMed/NCBI
|
|
33
|
Solomon BD, Pineda-Alvarez DE, Hadley DW,
Hansen NF, Kamat A, Donovan FX, Chandrasekharappa SC, Hong SK,
Roessler E and Mullikin JC: NISC Comparative Sequencing Program:
Exome sequencing and high-density microarray testing in monozygotic
twin pairs discordant for features of VACTERL association. Mol
Syndromol. 4:27–31. 2013.PubMed/NCBI
|
|
34
|
Nielsen R, Paul JS, Albrechtsen A and Song
YS: Genotype and SNP calling from next-generation sequencing data.
Nat Rev Genet. 12:443–451. 2011. View
Article : Google Scholar : PubMed/NCBI
|
|
35
|
Erlich Y: Blood ties: Chimerism can mask
twin discordance in high-throughput sequencing. Twin Res Hum Genet.
14:137–143. 2011. View Article : Google Scholar : PubMed/NCBI
|
|
36
|
Javierre BM, Fernandez AF, Richter J,
Al-Shahrour F, Martin-Subero JI, Rodriguez-Ubreva J, Berdasco M,
Fraga MF, O'Hanlon TP, Rider LG, et al: Changes in the pattern of
DNA methylation associate with twin discordance in systemic lupus
erythematosus. Genome Res. 20:170–179. 2010. View Article : Google Scholar : PubMed/NCBI
|
