Intestinal bacteria detected in cancer and adjacent tissue from patients with colorectal cancer
- Authors:
- Chen‑Jian Liu
- Yuan‑Lian Zhang
- Yun Shang
- Bian Wu
- En Yang
- Yi‑Yong Luo
- Xiao‑Ran Li
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Affiliations: Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, Yunnan 650500, P.R. China, Department of General Surgery, First People's Hospital of Yunnan Province, Kunming, Yunnan 650032, P.R. China - Published online on: November 15, 2018 https://doi.org/10.3892/ol.2018.9714
- Pages: 1115-1127
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Copyright: © Liu et al. This is an open access article distributed under the terms of Creative Commons Attribution License.
This article is mentioned in:
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|
Bäckhed F, Ley RE, Sonnenburg JL, Peterson DA and Gordon JI: Host-bacterial mutualism in the human intestine. Science. 307:1915–1920. 2005. View Article : Google Scholar : PubMed/NCBI | |
|
Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, Nielsen T, Pons N, Levenez F, Yamada T, et al: A human gut microbial gene catalogue established by metagenomic sequencing. Nature. 464:59–65. 2010. View Article : Google Scholar : PubMed/NCBI | |
|
Gao Z, Guo B, Gao R, Zhu Q and Qin H: Microbiota disbiosis is associated with colorectal cancer. Front Microbiol. 6:202015. View Article : Google Scholar : PubMed/NCBI | |
|
Sobhani I, Tap J, Roudot-Thoraval F, Roperch JP, Letulle S, Langella P, Corthier G, Van Nhieu Tran J and Furet JP: Microbial dysbiosis in colorectal cancer (CRC) patients. PLoS One. 6:e163932011. View Article : Google Scholar : PubMed/NCBI | |
|
Larsen N, Vogensen FK, van den Berg FW, Nielsen DS, Andreasen AS, Pedersen BK, Al-Soud WA, Sørensen SJ, Hansen LH and Jakobsen M: Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults. PLoS One. 5:e90852010. View Article : Google Scholar : PubMed/NCBI | |
|
Tannock GW: Molecular analysis of the intestinal microflora in IBD. Mucosal Immunol. 1 Suppl 1:S15–S18. 2008. View Article : Google Scholar : PubMed/NCBI | |
|
Ley RE, Turnbaugh PJ, Klein S and Gordon JI: Microbial ecology: Human gut microbes associated with obesity. Nature. 444:1022–1023. 2006. View Article : Google Scholar : PubMed/NCBI | |
|
Brenner H, Kloor M and Pox CP: Colorectal cancer. Lancet. 383:1490–1502. 2014. View Article : Google Scholar : PubMed/NCBI | |
|
Burt RW: Colon cancer screening. Gastroenterology. 119:837–853. 2000. View Article : Google Scholar : PubMed/NCBI | |
|
Platz EA, Willett WC, Colditz GA, Rimm EB, Spiegelman D and Giovannucci E: Proportion of colon cancer risk that might be preventable in a cohort of middle-aged US men. Cancer Causes Control. 11:579–588. 2000. View Article : Google Scholar : PubMed/NCBI | |
|
Watson AJ and Collins PD: Colon cancer: A civilization disorder. Dig Dis. 29:222–228. 2011. View Article : Google Scholar : PubMed/NCBI | |
|
Tilg H, Adolph TE, Gerner RR and Moschen AR: The intestinal microbiota in colorectal cancer. Cancer Cell. 33:954–964. 2018. View Article : Google Scholar : PubMed/NCBI | |
|
Wu S, Rhee KJ, Albesiano E, Rabizadeh S, Wu X, Yen HR, Huso DL, Brancati FL, Wick E, McAllister F, et al: A human colonic commensal promotes colon tumorigenesis via activation of T helper type 17 T cell responses. Nat Med. 15:1016–1022. 2009. View Article : Google Scholar : PubMed/NCBI | |
|
Castellarin M, Warren RL, Freeman JD, Dreolini L, Krzywinski M, Strauss J, Barnes R, Watson P, Allen-Vercoe E, Moore RA and Holt RA: Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma. Genome Res. 22:299–306. 2012. View Article : Google Scholar : PubMed/NCBI | |
|
Arthur JC, Perezchanona E, Mühlbauer M, Tomkovich S, Uronis JM, Fan TJ, Campbell BJ, Abujamel T, Dogan B, Rogers AB, et al: Intestinal inflammation targets cancer-inducing activity of the microbiota. Science. 338:120–123. 2012. View Article : Google Scholar : PubMed/NCBI | |
|
Sobhani I, Amiot A, Le Baleur Y, Levy M, Auriault ML, Van Nhieu JT and Delchier JC: Microbial dysbiosis and colon carcinogenesis: Could colon cancer be considered a bacteria-related disease? Therap Adv Gastroenterol. 6:215–229. 2013. View Article : Google Scholar : PubMed/NCBI | |
|
Isaac A, Kochubiei O and Vizir M: Colorectal cancer treatment. KhNMU. 2014. | |
|
Xinli L, Dachang W, Cuili Z and Yi X: Side effects of antibiotics on the intestinal microflora by PCR-DGGE. Pak J Pharm Sci. 26:339–343. 2013.PubMed/NCBI | |
|
Schmidt TM, Delong EF and Pace NR: Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. J Bacteriol. 173:4371–4378. 1991. View Article : Google Scholar : PubMed/NCBI | |
|
Wuyts J and Peer YVD: The European ribosomal RNA database. Nucleic Acids Res. 32:D101–D103. 2004. View Article : Google Scholar : PubMed/NCBI | |
|
Thompson JR, Marcelino LA and Polz MF: Heteroduplexes in mixed-template amplifications: Formation, consequence and elimination by ‘reconditioning PCR’. Nucleic Acids Res. 30:2083–2088. 2002. View Article : Google Scholar : PubMed/NCBI | |
|
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, et al: Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol. 75:7537–7541. 2009. View Article : Google Scholar : PubMed/NCBI | |
|
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J and Glöckner FO: SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 35:7188–7196. 2007. View Article : Google Scholar : PubMed/NCBI | |
|
Chao A: Estimating the population size for capture-recapture data with unequal catchability. Biometrics. 43:783–791. 1987. View Article : Google Scholar : PubMed/NCBI | |
|
Chao A, Hwang WH, Chen YC and Kuo CY: Estimating the number of shared species in two communities. Statistica Sinica. 10:227–246. 2000. | |
|
Shannon CE: The mathematical theory of communication. 1963. MD Comput. 14:306–317. 1997.PubMed/NCBI | |
|
Simpson EH: Measurement of diversity. Nature. 163:April 30–1949. View Article : Google Scholar : PubMed/NCBI | |
|
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F and Higgins DG: The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876–4882. 1997. View Article : Google Scholar : PubMed/NCBI | |
|
Saitou N and Nei M: The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol. 4:406–425. 1987.PubMed/NCBI | |
|
Kumar S, Tamura K and Nei M: MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform. 5:150–163. 2004. View Article : Google Scholar : PubMed/NCBI | |
|
Schwabe RF and Jobin C: The microbiome and cancer. Nat Rev Cancer. 13:800–812. 2013. View Article : Google Scholar : PubMed/NCBI | |
|
Allen-Vercoe E and Jobin C: Fusobacterium and enterobacteriaceae: Important players for CRC? Immunol Lett. 162:54–61. 2014. View Article : Google Scholar : PubMed/NCBI | |
|
Kim J, Artinyan A, Mailey B, Christopher S, Lee W, McKenzie S, Chen SL, Bhatia S, Pigazzi A and Garcia-Aguilar J: An interaction of race and ethnicity with socioeconomic status in rectal cancer outcomes. Ann Surg. 253:647–654. 2011. View Article : Google Scholar : PubMed/NCBI | |
|
Day GE, Provost E and Lanier AP: Alaska native mortality rates and trends. Public Health Rep. 124:54–64. 2009. View Article : Google Scholar : PubMed/NCBI | |
|
Lanier AP, Day GE, Kelly JJ and Provost E: Disparities in cancer mortality among Alaska Native people, 1994–2003. Alaska Med. 49:120–125. 2008.PubMed/NCBI | |
|
Yothers G, Sargent DJ, Wolmark N, Goldberg RM, O'Connell MJ, Benedetti JK, Saltz LB, Dignam JJ and Blackstock AW; ACCENT Collaborative Group, : Outcomes among black patients with stage II and III colon cancer receiving chemotherapy: An analysis of ACCENT adjuvant trials. J Natl Cancer Inst. 103:1498–1506. 2011. View Article : Google Scholar : PubMed/NCBI | |
|
Hester CM, Jala VR, Langille MG, Umar S, Greiner KA and Haribabu B: Fecal microbes, short chain fatty acids, and colorectal cancer across racial/ethnic groups. World J Gastroenterol. 21:2759–2769. 2015. View Article : Google Scholar : PubMed/NCBI | |
|
Bruno ME, Rogier EW, Frantz AL, Stefka AT, Thompson SN and Kaetzel CS: Regulation of the polymeric immunoglobulin receptor in intestinal epithelial cells by enterobacteriaceae: Implications for mucosal homeostasis. Immunol Invest. 39:356–382. 2010. View Article : Google Scholar : PubMed/NCBI | |
|
Morgan XC, Tickle TL, Sokol H, Gevers D, Devaney KL, Ward DV, Reyes JA, Shah SA, LeLeiko N, Snapper SB, et al: Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment. Genome Biol. 13:R792012. View Article : Google Scholar : PubMed/NCBI | |
|
Stecher B: The roles of inflammation, nutrient availability and the commensal microbiota in enteric pathogen infection. Microbiol Spectr. 3:2015.PubMed/NCBI | |
|
Mira-Pascual L, Cabrera-Rubio R, Ocon S, Costales P, Parra A, Suarez A, Moris F, Rodrigo L, Mira A and Collado MC: Microbial mucosal colonic shifts associated with the development of colorectal cancer reveal the presence of different bacterial and archaeal biomarkers. J Gastroenterol. 50:167–179. 2015. View Article : Google Scholar : PubMed/NCBI | |
|
Garrett WS, Gallini CA, Yatsunenko T, Michaud M, DuBois A, Delaney ML, Punit S, Karlsson M, Bry L, Glickman JN, et al: Enterobacteriaceae act in concert with the gut microbiota to induce spontaneous and maternally transmitted colitis. Cell Host Microbe. 8:292–300. 2010. View Article : Google Scholar : PubMed/NCBI | |
|
Lupp C, Robertson ML, Wickham ME, Sekirov I, Champion OL, Gaynor EC and Finlay BB: Host-mediated inflammation disrupts the intestinal microbiota and promotes the overgrowth of enterobacteriaceae. Cell Host Microbe. 2:2042007. View Article : Google Scholar : PubMed/NCBI | |
|
Holzapfel WH and Wood BJB: The family enterococcaceae. John Wiley Sons Ltd; 2014 | |
|
Wang T, Cai G, Qiu Y, Fei N, Zhang M, Pang X, Jia W, Cai S and Zhao L: Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers. ISME J. 6:320–329. 2012. View Article : Google Scholar : PubMed/NCBI | |
|
Balamurugan R, Rajendiran E, George S, Samuel GV and Ramakrishna BS: Real-time polymerase chain reaction quantification of specific butyrate-producing bacteria, Desulfovibrio and Enterococcus faecalis in the feces of patients with colorectal cancer. J Gastroenterol Hepatol. 23:1298–1303. 2008. View Article : Google Scholar : PubMed/NCBI | |
|
Balish E and Warner T: Enterococcus faecalis induces inflammatory bowel disease in interleukin-10 knockout mice. Am J Pathol. 160:2253–2257. 2002. View Article : Google Scholar : PubMed/NCBI | |
|
Sun T, Liu S, Zhou Y, Yao Z, Zhang D, Cao S, Wei Z, Tan B, Li Y, Lian Z and Wang S: Evolutionary biologic changes of gut microbiota in an ‘adenoma-carcinoma sequence’ mouse colorectal cancer model induced by 1,2-Dimethylhydrazine. Oncotarget. 8:444–457. 2017.PubMed/NCBI | |
|
Kohoutova D, Smajs D, Moravkova P, Cyrany J, Moravkova M, Forstlova M, Cihak M, Rejchrt S and Bures J: Escherichia coli strains of phylogenetic group B2 and D and bacteriocin production are associated with advanced colorectal neoplasia. BMC Infect Dis. 14:7332014. View Article : Google Scholar : PubMed/NCBI | |
|
Farkas-Himsley H and Yu H: Purified colicin as cytotoxic agent of neoplasia: Comparative study with crude colicin. Cytobios. 42:193–207. 1985.PubMed/NCBI | |
|
Bonnet M, Buc E, Sauvanet P, Darcha C, Dubois D, Pereira B, Déchelotte P, Bonnet R, Pezet D and Darfeuille-Michaud A: Colonization of the human gut by E. coli and colorectal cancer risk. Clin Cancer Res. 20:859–867. 2014. View Article : Google Scholar : PubMed/NCBI | |
|
Peterson CT, Vaughn AR, Sharma V, Chopra D, Mills PJ, Peterson SN and Sivamani RK: Effects of turmeric and curcumin dietary supplementation on human gut microbiota: A double-blind, randomized, placebo-controlled pilot study. J Evid Based Integr Med. 23:2515690X187907252018. View Article : Google Scholar : PubMed/NCBI | |
|
Stecher B, Robbiani R, Walker AW, Westendorf AM, Barthel M, Kremer M, Chaffron S, Macpherson AJ, Buer J, Parkhill J, et al: Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota. PLos Biol. 5:2177–2189. 2007. View Article : Google Scholar : PubMed/NCBI | |
|
Gevers D, Kugathasan S, Denson LA, Vázquez-Baeza Y, Van Treuren W, Ren B, Schwager E, Knights D, Song SJ, Yassour M, et al: The treatment-naive microbiome in new-onset Crohn's disease. Cell Host Microbe. 15:382–392. 2014. View Article : Google Scholar : PubMed/NCBI | |
|
Wu N, Yang X, Zhang R, Li J, Xiao X, Hu Y, Chen Y, Yang F, Lu N, Wang Z, et al: Dysbiosis signature of fecal microbiota in colorectal cancer patients. Microb Ecol. 66:462–470. 2013. View Article : Google Scholar : PubMed/NCBI | |
|
Hendrickx AP, Top J, Bayjanov JR, Kemperman H, Rogers MR, Paganelli FL, Bonten MJ and Willems RJ: Antibiotic-driven dysbiosis mediates intraluminal agglutination and alternative segregation of enterococcus faecium from the intestinal epithelium. MBio. 6:e01346–e01315. 2015. View Article : Google Scholar : PubMed/NCBI | |
|
Sanchez-Diaz AM, Cuartero C, Rodriguez JD, Lozano S, Alonso JM, Rodríguez-Domínguez M, Tedim AP, Del Campo R, López J, Cantón R and Ruiz-Garbajosa P: The rise of ampicillin-resistant Enterococcus faecium high-risk clones as a frequent intestinal colonizer in oncohaematological neutropenic patients on levofloxacin prophylaxis: A risk for bacteraemia? Clin Microbiol Infect. 22(59): e51–e58. 2016. | |
|
Becking JH: The family azotobacteraceae. Springer; New York: 2006 | |
|
Chen L, Zhang YH, Huang T and Cai YD: Gene expression profiling gut microbiota in different races of humans. Sci Rep. 6:230752016. View Article : Google Scholar : PubMed/NCBI | |
|
Collins MD, Hutson RA, Foster G, Falsen E and Weiss N: Isobaculum melis gen. nov., sp. nov., a Carnobacterium-like organism isolated from the intestine of a badger. Int J Syst Evol Microbiol. 52:207–210. 2002. View Article : Google Scholar : PubMed/NCBI | |
|
Aller AI, Castro C, Medina MJ, González MT, Sevilla P, Morilla MD, Corzo JE and Martín-Mazuelos E: Isolation of Moellerella wisconsensis from blood culture from a patient with acute cholecystitis. Clin Microbiol Infect. 15:1193–1194. 2009. View Article : Google Scholar : PubMed/NCBI | |
|
Stock I, Falsen E and Wiedemann B: Moellerella wisconsensis: Identification, natural antibiotic susceptibility and its dependency on the medium applied. Diagn Microbiol Infect Dis. 45:1–11. 2003. View Article : Google Scholar : PubMed/NCBI | |
|
Gagnière J, Raisch J, Veziant J, Barnich N, Bonnet R, Buc E, Bringer MA, Pezet D and Bonnet M: Gut microbiota imbalance and colorectal cancer. World J Gastroenterol. 22:501–518. 2016. View Article : Google Scholar : PubMed/NCBI | |
|
Dubrow R, Edberg S, Wikfors E, Callan D, Troncale F, Vender R, Brand M and Yapp R: Fecal carriage of Streptococcus bovis and colorectal adenomas. Gastroenterology. 101:721–725. 1991. View Article : Google Scholar : PubMed/NCBI | |
|
Farhadi T, Fakharian A and Ovchinnikov RS: Virtual screening for potential inhibitors of CTX-M-15 protein of Klebsiella pneumoniae. Interdiscip Sci. 10:694–703. 2018. View Article : Google Scholar : PubMed/NCBI | |
|
Swidsinski A, Khilkin M, Kerjaschki D, Schreiber S, Ortner M, Weber J and Lochs H: Association between intraepithelial escherichia coli and colorectal cancer. Gastroenterology. 115:281–286. 1998. View Article : Google Scholar : PubMed/NCBI | |
|
Poulsen ML and Bisgaard ML: MUTYH associated polyposis (MAP). Curr Genomics. 9:420–435. 2008. View Article : Google Scholar : PubMed/NCBI | |
|
Khan AA and Cash P: E. coli and colon cancer: Is mutY a culprit? Cancer Lett. 341:127–131. 2013. View Article : Google Scholar : PubMed/NCBI | |
|
Yu T, Guo F, Yu Y, Sun T, Ma D, Han J, Qian Y, Kryczek I, Sun D, Nagarsheth N, et al: Fusobacterium nucleatum promotes chemoresistance to colorectal cancer by modulating autophagy. Cell. 170(548–563): e162017. | |
|
Bourassa L and Clarridge JE III: Clinical significance and characterization of streptococcus tigurinus isolates in an adult population. J Clin Microbiol. 53:3574–3579. 2015. View Article : Google Scholar : PubMed/NCBI | |
|
Kim B, Huh HJ, Chung DR, Kim WS, Ki CS and Lee NY: The first case of concurrent infective endocarditis and spondylitis caused by streptococcus tigurinus. Ann Lab Med. 35:654–656. 2015. View Article : Google Scholar : PubMed/NCBI | |
|
Michelena A, Bonavila C, Zubeltzu B and Goenaga MA: Endocarditis due to Streptococcus tigurinus: Presentation of a case and a review of the literature. Enferm Infecc Microbiol Clín. 33:575–576. 2015.(In Spanish). View Article : Google Scholar | |
|
Skowron MA, Zebrowska J, Wegrzyn G and Skowron PM: MmoSTI restriction endonuclease, isolated from Morganella morganii infecting a tropical moth, Actias selene, cleaving 5′-|CCNGG-3′ sequences. J Appl Genetics. 57:143–149. 2016. View Article : Google Scholar | |
|
Murphy K, Ryan C, Dempsey EM, O'Toole PW, Ross RP, Stanton C and Ryan CA: Neonatal sulfhemoglobinemia and hemolytic anemia associated with intestinal morganella morganii. Pediatrics. 136:1641–1645. 2015. View Article : Google Scholar | |
|
Shahbazi E, Mollasalehi H and Minai-Tehrani D: Development and evaluation of an improved quantitative loop-mediated isothermal amplification method for rapid detection of morganella morganii. Talanta. 191:54–58. 2019. View Article : Google Scholar : PubMed/NCBI | |
|
Koh GY, Kane A, Lee K, Xu Q, Wu X, Roper J, Mason JB and Crott JW: Parabacteroides distasonis attenuates toll-like receptor 4 signaling and Akt activation and blocks colon tumor formation in high-fat diet-fed azoxymethane-treated mice. Int J Cancer. April 26–2018.(Epub ahead of print). View Article : Google Scholar | |
|
Dziarski R, Park SY, Kashyap DR, Dowd SE and Gupta D: Pglyrp-regulated gut microflora prevotella falsenii, parabacteroides distasonis and bacteroides eggerthii enhance and alistipes finegoldii attenuates colitis in mice. PLos One. 11:e01461622016. View Article : Google Scholar : PubMed/NCBI | |
|
Davis-Richardson AG, Ardissone AN, Dias R, Simell V, Leonard MT, Kemppainen KM, Drew JC, Schatz D, Atkinson MA, Kolaczkowski B, et al: Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes. Front Microbiol. 5:6782014. View Article : Google Scholar : PubMed/NCBI | |
|
Ignacio A, Fernandes MR, Avila-Campos MJ and Nakano V: Enterotoxigenic and non-enterotoxigenic bacteroides fragilis from fecal microbiota of children. Braz J Microbiol. 46:1141–1145. 2015. View Article : Google Scholar : PubMed/NCBI |
