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Case Report Open Access

Whole genome, exon mutation and transcriptomic profiling of acute myeloid leukemia: A case report

  • Authors:
    • Si-Han Lai
    • Ye-Cheng Li
    • Shan Zhang
    • Rui Deng
    • Yan Deng
    • Fang-Yi Fan
  • View Affiliations / Copyright

    Affiliations: Hematology Department and Hematopoietic Stem Cell Transplantation Center, The General Hospital of Western Theater Command, Chengdu, Sichuan 610083, P.R. China
    Copyright: © Lai et al. This is an open access article distributed under the terms of Creative Commons Attribution License.
  • Article Number: 559
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    Published online on: May 25, 2021
       https://doi.org/10.3892/ol.2021.12820
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Abstract

The present study aimed to observe previously unidentified gene mutation and expression profiles associated with acute myeloid leukemia (AML) at the individual level, based on the blood samples of a father‑son pair. Genomic DNA and RNA samples from blood serum were collected. Whole‑genome sequencing (WGS) and whole‑exome sequencing (WES), as well as mRNA sequencing of the son, were performed. For the father's sample, a total of 3,897,164 single nucleotide polymorphisms (SNPs) and 780,834 insertion and deletions (indels) were identified. Regarding amino acid translation, there were 11,316 non‑synonymous, 12 stop‑loss, 12,033 synonymous, 92 stop‑gain SNPs, 63 frameshift insertions, 73 frameshift deletions, 242 non‑frameshift insertions, 248 non‑frameshift deletions, four stop‑gains and two stop‑loss for indel variants. Among the AML‑related genes that had been previously identified, 14 genes were found in the father's exon region. For WES of the son's DNA, 96,639 SNPs were identified, including 10,504 non‑synonymous SNPs. Seven mutant genes were found in sons' exon region compared with 121 AML‑related genes. Based on the transcriptomic sequencing, there were 54 differentially expressed mRNAs, including 31 upregulated and 23 downregulated mRNAs. In the exon region, 10,072 SNPs were detected, and different types of alternative splicing in the son's sample were observed. Overall, whole genome, exon mutation and transcriptomic profiling of the present two patients with AML may provide a new insight into the molecular events governing the development of AML.
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Copy and paste a formatted citation
Spandidos Publications style
Lai S, Li Y, Zhang S, Deng R, Deng Y and Fan F: Whole genome, exon mutation and transcriptomic profiling of acute myeloid leukemia: A case report. Oncol Lett 22: 559, 2021.
APA
Lai, S., Li, Y., Zhang, S., Deng, R., Deng, Y., & Fan, F. (2021). Whole genome, exon mutation and transcriptomic profiling of acute myeloid leukemia: A case report. Oncology Letters, 22, 559. https://doi.org/10.3892/ol.2021.12820
MLA
Lai, S., Li, Y., Zhang, S., Deng, R., Deng, Y., Fan, F."Whole genome, exon mutation and transcriptomic profiling of acute myeloid leukemia: A case report". Oncology Letters 22.1 (2021): 559.
Chicago
Lai, S., Li, Y., Zhang, S., Deng, R., Deng, Y., Fan, F."Whole genome, exon mutation and transcriptomic profiling of acute myeloid leukemia: A case report". Oncology Letters 22, no. 1 (2021): 559. https://doi.org/10.3892/ol.2021.12820
Copy and paste a formatted citation
x
Spandidos Publications style
Lai S, Li Y, Zhang S, Deng R, Deng Y and Fan F: Whole genome, exon mutation and transcriptomic profiling of acute myeloid leukemia: A case report. Oncol Lett 22: 559, 2021.
APA
Lai, S., Li, Y., Zhang, S., Deng, R., Deng, Y., & Fan, F. (2021). Whole genome, exon mutation and transcriptomic profiling of acute myeloid leukemia: A case report. Oncology Letters, 22, 559. https://doi.org/10.3892/ol.2021.12820
MLA
Lai, S., Li, Y., Zhang, S., Deng, R., Deng, Y., Fan, F."Whole genome, exon mutation and transcriptomic profiling of acute myeloid leukemia: A case report". Oncology Letters 22.1 (2021): 559.
Chicago
Lai, S., Li, Y., Zhang, S., Deng, R., Deng, Y., Fan, F."Whole genome, exon mutation and transcriptomic profiling of acute myeloid leukemia: A case report". Oncology Letters 22, no. 1 (2021): 559. https://doi.org/10.3892/ol.2021.12820
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