1
|
Thrift AP, Wenker TN and El-Serag HB:
Global burden of gastric cancer: Epidemiological trends, risk
factors, screening and prevention. Nat Rev Clin Oncol. 20:338–349.
2023. View Article : Google Scholar : PubMed/NCBI
|
2
|
Sung H, Ferlay J, Siegel RL, Laversanne M,
Soerjomataram I, Jemal A and Bray F: Global cancer statistics 2020:
GLOBOCAN estimates of incidence and mortality worldwide for 36
cancers in 185 countries. CA Cancer J Clin. 71:209–249. 2021.
View Article : Google Scholar : PubMed/NCBI
|
3
|
de Visser KE and Joyce JA: The evolving
tumor microenvironment: From cancer initiation to metastatic
outgrowth. Cancer Cell. 41:374–403. 2023. View Article : Google Scholar : PubMed/NCBI
|
4
|
Wang R, Song S, Qin J, Yoshimura K, Peng
F, Chu Y, Li Y, Fan Y, Jin J, Dang M, et al: Evolution of immune
and stromal cell states and ecotypes during gastric adenocarcinoma
progression. Cancer Cell. 41:1407–1426.e9. 2023. View Article : Google Scholar : PubMed/NCBI
|
5
|
Guan WL, He Y and Xu RH: Gastric cancer
treatment: Recent progress and future perspectives. J Hematol
Oncol. 16:572023. View Article : Google Scholar : PubMed/NCBI
|
6
|
Watanabe H, Nonoguchi K, Sakurai T, Masuda
T, Itoh K and Fujita J: A novel protein Depp, which is induced by
progesterone in human endometrial stromal cells activates Elk-1
transcription factor. Mol Hum Reprod. 11:471–476. 2005. View Article : Google Scholar : PubMed/NCBI
|
7
|
Salcher S, Hagenbuchner J, Geiger K,
Seiter MA, Rainer J, Kofler R, Hermann M, Kiechl-Kohlendorfer U,
Ausserlechner MJ and Obexer P: C10ORF10/DEPP, a transcriptional
target of FOXO3, regulates ROS-sensitivity in human neuroblastoma.
Mol Cancer. 13:2242014. View Article : Google Scholar : PubMed/NCBI
|
8
|
Wang Z, Ma L, Su M, Zhou Y, Mao K, Li C,
Peng G, Zhou C, Shen B and Dou J: Baicalin induces cellular
senescence in human colon cancer cells via upregulation of DEPP and
the activation of Ras/Raf/MEK/ERK signaling. Cell Death Dis.
9:2172018. View Article : Google Scholar : PubMed/NCBI
|
9
|
Deng Y, Song Y, Du Q, Wang CC, Li H, Sui
Y, Zhang Y and Tang T: Anti-HPV16 oncoproteins siRNA therapy for
cervical cancer using a novel transdermal peptide PKU12. Front
Oncol. 13:11759582023. View Article : Google Scholar : PubMed/NCBI
|
10
|
Chen Y, Tang M, Li H and Huang J: Effects
of C10orf10 on growth and prognosis of glioma under hypoxia. Zhong
Nan Da Xue Xue Bao Yi Xue Ban. 48:499–507. 2023.(In Chinese,
English). PubMed/NCBI
|
11
|
Yoon SJ, Park J, Shin Y, Choi Y, Park SW,
Kang SG, Son HY and Huh YM: Deconvolution of diffuse gastric cancer
and the suppression of CD34 on the BALB/c nude mice model. BMC
Cancer. 20:3142020. View Article : Google Scholar : PubMed/NCBI
|
12
|
Ooi CH, Ivanova T, Wu J, Lee M, Tan IB,
Tao J, Ward L, Koo JH, Gopalakrishnan V, Zhu Y, et al: Oncogenic
pathway combinations predict clinical prognosis in gastric cancer.
PLoS Genet. 5:e10006762009. View Article : Google Scholar : PubMed/NCBI
|
13
|
Ritchie ME, Phipson B, Wu D, Hu Y, Law CW,
Shi W and Smyth GK: limma powers differential expression analyses
for RNA-sequencing and microarray studies. Nucleic Acids Res.
43:e472015. View Article : Google Scholar : PubMed/NCBI
|
14
|
Jia A, Xu L and Wang Y: Venn diagrams in
bioinformatics. Brief Bioinform. 22:bbab1082021. View Article : Google Scholar : PubMed/NCBI
|
15
|
Livak KJ and Schmittgen TD: Analysis of
relative gene expression data using real-time quantitative PCR and
the 2(−Delta Delta C(T)) Method. Methods. 25:402–8. 2001.
View Article : Google Scholar : PubMed/NCBI
|
16
|
Iasonos A, Schrag D, Raj GV and Panageas
KS: How to build and interpret a nomogram for cancer prognosis. J
Clin Oncol. 26:1364–1370. 2008. View Article : Google Scholar : PubMed/NCBI
|
17
|
Balachandran VP, Gonen M, Smith JJ and
DeMatteo RP: Nomograms in oncology: More than meets the eye. Lancet
Oncol. 16:e173–e180. 2015. View Article : Google Scholar : PubMed/NCBI
|
18
|
Yoshihara K, Shahmoradgoli M, Martínez E,
Vegesna R, Kim H, Torres-Garcia W, Treviño V, Shen H, Laird PW,
Levine DA, et al: Inferring tumour purity and stromal and immune
cell admixture from expression data. Nat Commun. 4:26122013.
View Article : Google Scholar : PubMed/NCBI
|
19
|
Racle J, de Jonge K, Baumgaertner P,
Speiser DE and Gfeller D: Simultaneous enumeration of cancer and
immune cell types from bulk tumor gene expression data. Elife.
6:e264762017. View Article : Google Scholar : PubMed/NCBI
|
20
|
Li T, Fan J, Wang B, Traugh N, Chen Q, Liu
JS, Li B and Liu XS: TIMER: A web server for comprehensive analysis
of tumor-infiltrating immune cells. Cancer Res. 77:e108–e110. 2017.
View Article : Google Scholar : PubMed/NCBI
|
21
|
Finotello F, Mayer C, Plattner C,
Laschober G, Rieder D, Hackl H, Krogsdam A, Loncova Z, Posch W,
Wilflingseder D, et al: Molecular and pharmacological modulators of
the tumor immune contexture revealed by deconvolution of RNA-seq
data. Genome Med. 11:342019. View Article : Google Scholar : PubMed/NCBI
|
22
|
Sturm G, Finotello F and List M:
Immunedeconv: An R package for unified access to computational
methods for estimating immune cell fractions from bulk
RNA-sequencing data. Methods Mol Biol. 2120:223–232. 2020.
View Article : Google Scholar : PubMed/NCBI
|
23
|
Yu G, Wang LG, Han Y and He QY:
clusterProfiler: An R package for comparing biological themes among
gene clusters. OMICS. 16:284–287. 2012. View Article : Google Scholar : PubMed/NCBI
|
24
|
Liberzon A, Birger C, Thorvaldsdóttir H,
Ghandi M, Mesirov JP and Tamayo P: The molecular signatures
database (MSigDB) hallmark gene set collection. Cell Syst.
1:417–425. 2015. View Article : Google Scholar : PubMed/NCBI
|
25
|
Yu G, Li F, Qin Y, Bo X, Wu Y and Wang S:
GOSemSim: An R package for measuring semantic similarity among GO
terms and gene products. Bioinformatics. 26:976–978. 2010.
View Article : Google Scholar : PubMed/NCBI
|
26
|
Maeser D, Gruener RF and Huang RS:
oncoPredict: An R package for predicting in vivo or cancer patient
drug response and biomarkers from cell line screening data. Brief
Bioinform. 22:bbab2602021. View Article : Google Scholar : PubMed/NCBI
|
27
|
Uno H, Claggett B, Tian L, Inoue E, Gallo
P, Miyata T, Schrag D, Takeuchi M, Uyama Y, Zhao L, et al: Moving
beyond the hazard ratio in quantifying the between-group difference
in survival analysis. J Clin Oncol. 32:2380–2385. 2014. View Article : Google Scholar : PubMed/NCBI
|
28
|
Lei ZN, Teng QX, Tian Q, Chen W, Xie Y, Wu
K, Zeng Q, Zeng L, Pan Y, Chen ZS and He Y: Signaling pathways and
therapeutic interventions in gastric cancer. Signal Transduct
Target Ther. 7:3582022. View Article : Google Scholar : PubMed/NCBI
|
29
|
Lauren P: The two histological main types
of gastric carcinoma: diffuse and so-called intestinal-type
carcinoma. An attempt at a histo-clinical classification. Acta
Pathol Microbiol Scand. 64:31–49. 1965. View Article : Google Scholar : PubMed/NCBI
|
30
|
Ajani JA, Lee J, Sano T, Janjigian YY, Fan
D and Song S: Gastric adenocarcinoma. Nat Rev Dis Primers.
3:170362017. View Article : Google Scholar : PubMed/NCBI
|
31
|
Hanahan D and Weinberg RA: Hallmarks of
cancer: The next generation. Cell. 144:646–674. 2011. View Article : Google Scholar : PubMed/NCBI
|
32
|
Smyth EC, Nilsson M, Grabsch HI, van
Grieken NC and Lordick F: Gastric cancer. Lancet. 396:635–648.
2020. View Article : Google Scholar : PubMed/NCBI
|
33
|
Gwee YX, Chia DKA, So J, Ceelen W, Yong
WP, Tan P, Ong CJ and Sundar R: Integration of genomic biology into
therapeutic strategies of gastric cancer peritoneal metastasis. J
Clin Oncol. 40:28302022. View Article : Google Scholar : PubMed/NCBI
|
34
|
Fang C, Wang W, Deng JY, Sun Z, Seeruttun
SR, Wang ZN, Xu HM, Liang H and Zhou ZW: Proposal and validation of
a modified staging system to improve the prognosis predictive
performance of the 8th AJCC/UICC pTNM staging system for gastric
adenocarcinoma: A multicenter study with external validation.
Cancer Commun (Lond). 38:672018.PubMed/NCBI
|
35
|
Arner EN and Rathmell JC: Metabolic
programming and immune suppression in the tumor microenvironment.
Cancer Cell. 41:421–433. 2023. View Article : Google Scholar : PubMed/NCBI
|
36
|
Chen Y, McAndrews KM and Kalluri R:
Clinical and therapeutic relevance of cancer-associated
fibroblasts. Nat Rev Clin Oncol. 18:792–804. 2021. View Article : Google Scholar : PubMed/NCBI
|
37
|
Amersfoort J, Eelen G and Carmeliet P:
Immunomodulation by endothelial cells-partnering up with the immune
system? Nat Rev Immunol. 22:576–588. 2022. View Article : Google Scholar : PubMed/NCBI
|
38
|
Ma Q, Dieterich LC and Detmar M: Multiple
roles of lymphatic vessels in tumor progression. Curr Opin Immunol.
53:7–12. 2018. View Article : Google Scholar : PubMed/NCBI
|
39
|
Xiang X, Wang J, Lu D and Xu X: Targeting
tumor-associated macrophages to synergize tumor immunotherapy.
Signal Transduct Target Ther. 6:752021. View Article : Google Scholar : PubMed/NCBI
|
40
|
Chen Z, Han F, Du Y, Shi H and Zhou W:
Hypoxic microenvironment in cancer: molecular mechanisms and
therapeutic interventions. Signal Transduct Target Ther. 8:702023.
View Article : Google Scholar : PubMed/NCBI
|
41
|
Dongre A and Weinberg RA: New insights
into the mechanisms of epithelial-mesenchymal transition and
implications for cancer. Nat Rev Mol Cell Biol. 20:69–84. 2019.
View Article : Google Scholar : PubMed/NCBI
|
42
|
Glimelius B, Ekström K, Hoffman K, Graf W,
Sjödén PO, Haglund U, Svensson C, Enander LK, Linné T, Sellström H
and Heuman R: Randomized comparison between chemotherapy plus best
supportive care with best supportive care in advanced gastric
cancer. Ann Oncol. 8:163–168. 1997. View Article : Google Scholar : PubMed/NCBI
|
43
|
Yoon C, Park DJ, Schmidt B, Thomas NJ, Lee
HJ, Kim TS, Janjigian YY, Cohen DJ and Yoon SS: CD44 expression
denotes a subpopulation of gastric cancer cells in which Hedgehog
signaling promotes chemotherapy resistance. Clin Cancer Res.
20:3974–3988. 2014. View Article : Google Scholar : PubMed/NCBI
|
44
|
Stepp MW, Folz RJ, Yu J and Zelko IN: The
c10orf10 gene product is a new link between oxidative stress and
autophagy. Biochim Biophys Acta. 1843:1076–1088. 2014. View Article : Google Scholar : PubMed/NCBI
|
45
|
Wyant GA, Jiang Q, Singh M, Qayyum S,
Levrero C, Maron BA and Kaelin WG Jr: Induction of DEPP1 by HIF
mediates multiple hallmarks of ischemic cardiomyopathy.
Circulation. 150:770–786. 2024. View Article : Google Scholar : PubMed/NCBI
|
46
|
Dower CM, Wills CA, Frisch SM and Wang HG:
Mechanisms and context underlying the role of autophagy in cancer
metastasis. Autophagy. 14:1110–1128. 2018. View Article : Google Scholar : PubMed/NCBI
|