Transcriptome and miRNA network analysis of familial hypercholesterolemia

  • Authors:
    • Haibin Chen
    • Liang Wang
    • Jinfa Jiang
  • View Affiliations

  • Published online on: December 27, 2013     https://doi.org/10.3892/ijmm.2013.1610
  • Pages: 670-676
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Abstract

Familial hypercholesterolemia (FH) is a genetic disorder characterized by a high serum concentration of low‑density lipoprotein (LDL) cholesterol. The high LDL cholesterol level leads to an excess deposition of cholesterol in the arterial walls and accelerated atherosclerosis, thereby increasing the risk of premature coronary heart disease. In the present study, we used a DNA microarray approach to identify gene expression profiles that distinguish patients with FH from healthy control subjects. Furthermore, transcription factors (TFs), microRNAs (miRNAs), target genes and pathways were analyzed to explore the potential transcriptional interactions occurring in FH. Publicly available microarray and regulation data were used to construct a regulatory network to identify additional genes related to FH and their interactions. The results revealed that specificity protein 1 (SP1), signal transducer and activator of transcription 1 (STAT1) and spleen focus forming virus (SFFV) proviral integration oncogene spi1 (SPI1) play a central role in the FH regulatory network. In addition, the TF, upstream transcription factor 2, c-fos interacting (USF2) and the gene, Wiskott-Aldrich syndrome (WAS), were identified to be associated with FH, although no reports for these proteins exist in the literature. Overall, transcriptional network analysis proved to be effective approach to identify novel targets for FH therapy.

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2014-March
Volume 33 Issue 3

Print ISSN: 1107-3756
Online ISSN:1791-244X

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Spandidos Publications style
Chen H, Wang L and Jiang J: Transcriptome and miRNA network analysis of familial hypercholesterolemia. Int J Mol Med 33: 670-676, 2014
APA
Chen, H., Wang, L., & Jiang, J. (2014). Transcriptome and miRNA network analysis of familial hypercholesterolemia. International Journal of Molecular Medicine, 33, 670-676. https://doi.org/10.3892/ijmm.2013.1610
MLA
Chen, H., Wang, L., Jiang, J."Transcriptome and miRNA network analysis of familial hypercholesterolemia". International Journal of Molecular Medicine 33.3 (2014): 670-676.
Chicago
Chen, H., Wang, L., Jiang, J."Transcriptome and miRNA network analysis of familial hypercholesterolemia". International Journal of Molecular Medicine 33, no. 3 (2014): 670-676. https://doi.org/10.3892/ijmm.2013.1610