miR-922 regulates CYLD expression and promotes the cell proliferation of human hepatocellular carcinoma

Introduction

Hepatocellular carcinoma (HCC) is the fifth most common cancer worldwide and the third most common cause of cancer-related mortality (1). Despite improvements in surgical techniques and other treatments for HCC, the prognosis of HCC patients remains unsatisfactory. It is imperative to understand the molecular mechanisms of HCC and find optimized strategies to improve HCC treatment (2).

A growing number of studies have revealed that microRNAs (miRNAs) are highly conserved non-coding RNA oligonucleotides (18–25 nt long) that play essential roles in regulating diverse biological processes, such as cell proliferation, invasion, migration, apoptosis and the cell cycle (3–5). miRNAs have been indicated in the regulation of cancer development. Wang et al revealed that downregulation of miR-122 promoted proliferation, migration and invasion of HCC by activating epithelial-mesenchymal transition (6). miR-383 was reported to inhibit HCC cell proliferation via targeting a proliferation-inducing ligand (APRIL) (7). Furthermore, Zhang et al indicated that miR-381 inhibited cell growth and invasion by targeting the liver receptor homolog-1 in HCC (8). However, the biological function of miR-922 and the related mechanisms in HCC remain unclear.

Cylindromatosis (CYLD), a deubiquitination enzyme, is a tumor-suppressor gene in different types of cancer (9,10). Herein, we indicated that expression of miR-922 was upregulated in HCC cells and clinical tissues. Overexpression of miR-922 promoted HCC cell proliferation. Bioinformatic analyses revealed that miR-922 is able to bind to the 3 untranslated region (3UTR) of CYLD mRNA to prevent its translation, which was confirmed by luciferase reporter assay. Further experiments indicated that CYLD downregulation counteracted suppress of HCC cell proliferation by the inhibitor of miR-922, miR-922-in. Together, our data suggest that miR-922 overexpression promotes HCC cell growth through the regulation of CYLD expression.

Materials and methods

Cell culture

Human HCC cell lines Huh7, MHCC97H, HepG2, QGY-7703, Hep3B, MHCC97L, HCCC-9810 and BEL-7402 were obtained from the American Type Culture Collection (ATCC; Manassas, VA, USA), and were cultured in Dulbecco's modified Eagle's medium (Gibco, Grand Island, NY, USA) supplemented with 10% fetal bovine serum (FBS; Sigma, St. Louis, MO, USA), and 100 U/ml of penicillin-streptomycin (Invitrogen, Carlsbad, CA, USA). A human hepatic cell line THLE3 was purchased from the China Center for Type Culture Collection (CCTCC; Wuhan, China), and was cultured in McCoy's 5A modified medium (Invitrogen, Life Technologies, Carlsbad, CA, USA) supplemented with 10% FBS and 100 U/ml of penicillin-streptomycin. All cells were maintained at 37°C in a humidified incubator containing 5% CO2.

Clinical specimens

Eight pairs of primary human HCC tissue samples and adjacent normal tissue (ANT) samples were obtained from HCC patients at the Department of Hepato-Biliary-Pancreatic Surgery, Sun Yat-sen Memorial Hospital, Sun Yat-sen University (Guangzhou, China), following surgical dissections. Written informed consent was obtained from each participant. The present study was approved by the Ethics Committee of Sun Yat-sen Memorial Hospital, Sun Yat-sen University. Tissues were snap-frozen in liquid nitrogen.

Plasmids, small interfering RNA and transfection

miR-922 mimic, miR-922 inhibitor (miR-922-in) and negative controls were purchased from GeneCopoeia Co., Ltd. (Guangzhou, China) and transfected into OS cells using Lipofectamine 2000 reagent (Invitrogen) according to the manufacturer's protocol. The CYLD ORF was amplified from the Hep3B cell cDNA and subcloned into pEGFP-N3 (Invitrogen). The wild-type 3′UTR of CYLD was synthesized and subcloned into the firefly luciferase reporter (RiboBio, Guangzhou, China), and then transfected into HCC cells using Lipofectamine 2000 reagent (Invitrogen) according to the manufacturer's instructions. shRNA lentiviruses against CYLD were purchased from GeneCopoeia (Co., Ltd.) and transfected into Hep3B cells in 24-well plates using Lipofectamine 2000 reagent (Invitrogen) according to the manufacturer's instructions.

RNA extraction and real-time quantitative PCR

Total RNA was extracted using TRIzol reagent (Invitrogen), and then cDNA was synthesized from 5 ng of total RNA using the miRNA First-Strand cDNA Synthesis SuperMix (TransGen Biotech, Beijing, China). The expression of miR-922 was detected by TransScript® Green miRNA Two-Step qRT-PCR SuperMix (TransGen Biotech). In addition, the relative miR-922 expression levels after normalization to U6 were calculated. The cyclin D1 and MYC levels were quantified using qRT-PCR with the TaqMan®. We assessed the RNA expression according to relative quantification using the 2−ΔΔCt method to determine the fold-change in the expression. Each sample was analyzed in triplicate and the mean expression level was calculated.

MTT and colony formation assays

For the MTT assay, at four different time points (24, 48, 72 and 96 h) 20 µl of 5 mg/ml MTT solution (Sigma-Aldrich, St. Louis, MO, USA) was added to each well, followed by incubation for 4 h at 37°C and the absorbance was read at 490 nm by a Thermo Scientific Multiskan (Thermo Fisher Scientific, USA). For the colony formation assays, Hep3B cells after transfection were harvested and seeded into 6-well plates at 1×103 cells/well. Two weeks after seeding, the cells were stained with 0.1% crystal violet for 1 min and fixation with 10% formaldehyde for 10 min. Images were captured and the colonies were counted. Each time point was repeated in three wells and the experiment was independently performed for three times.

Anchorage-independent growth assay

One thousand HepG2 cells were trypsinized and resuspended in 2 ml complete medium plus 0.3% agar (Sigma). The agar-cell mixture was plated on top of a bottom layer comprising 0.66% complete medium agar mixture. The plates were incubated at 37°C for >2 weeks until the visible colonies had formed, and colonies >0.1 mm in diameter were counted. The experiment was performed independently three times for each cell line.

Luciferase assays

Cells were transferred with miR-922, or miR-922-in, or miR-922-mut into 24-well plates at a density of 30,000 cells/well. After 24 h, the cells were co-transfected with the pRL-TK plasmid (Promega, Madison, WI, USA) containing the Renilla luciferase gene, and various constructs containing the seed sequence of CYLD 3′UTR. Luciferase reporter assays were performed using the Dual-Luciferase reporter assay system according to the manufacturer's instructions.

Western blotting

The cultured cells were washed with 1X phosphate-buffered saline (PBS) and lysed with RIPA buffer. Equal quantities of protein (30 µg) were used for the detection of CYLD, c-Myc, cyclin D1, Rb and p-Rb protein (1:1,000) and α-tubulin (1:1,000) (both from Cell Signaling Technology, Danvers, MA, USA) was used as the loading control. In addition, the membranes were washed with PBS and incubated with the respective goat anti-rabbit secondary antibodies (Beyotime Biotechnology, Shanghai, China). The bound antibodies were detected using an ECL kit. Quantity One software was used to quantify protein band intensities.

Statistical analysis

All results in the present study were statistically presented as mean ± standard error of the mean using SPSS 19.0 (IBM). P<0.05 was considered to indicate a statistically significant result by Student's t-test.

Results

miR-922 expression is upregulated in HCC cell lines and HCC tissues

To detect the expression of miR-922 in HCC cells, qRT-PCR was used to analyze miR-922 expression in HCC cells and human hepatic cell line THLE3. Expression of miR-922 was markedly upregulated in the HCC cell lines compared with that in the THLE3 cells (Fig. 1A). We also evaluated the expression of miR-922 in HCC specimens. As showed in Fig. 1B, upregulation of miR-922 was observed in the HCC tissues compared with adjacent non-tumor tissues (ANT). Collectively, miR-992 may play a tumor-promoting role in the progression of HCC.

Figure 1. Expression of miR-922 in human hepatocellular carcinoma (HCC) cell lines and tissues. (A) Real-time PCR analysis of miR-922 expression in the human hepatic cell line THLE3 and HCC cell lines, including Huh7, MHCC97H, HepG2, QGY-7703, Hep3B, MHCC97L, HCCC-9810 and BEL-7402. (B) Relative miR-922 mRNA expression levels in 8 paired primary HCC tissues (T) and the matched adjacent normal tissues (ANT) from the same patients were detected by PCR analysis, and the T/ANT ratios are shown. Experiments were repeated at least three times. Each bar represents the mean of three independent experiments; *P<0.05.

miR-922 promotes, while its inhibitor miR-922-in suppresses HCC cell proliferation

To investigate the biological function of miR-922 in HCC, Hep3B cells were transfected with miR-922 mimic, miR-922-in or negative controls. Transfection efficiency was confirmed by qRT-PCR (Figs. 2A and 3A). Cell growth assay showed that upregulation of miR-922 efficiently promoted the proliferation of Hep3B cells (Fig. 2B). Conversely, a significant decrease in the number of Hep3B cells was observed in the miR-922-in group (Fig. 3B). Notably, colony formation assays indicated that miR-922 significantly promoted, while miR-922-in markedly inhibited the ability of colony formation in the Hep3B cells (Figs. 2C and 3C). Results of anchorage-independent growth showed that miR-922-transfected Hep3B cells formed more and larger colonies (Fig. 2D). In contrast, Hep3B cells after transfection with miR-922-in showed a significant reduction in the ability to form colonies on soft agar (Fig. 3D). Collectively, miR-922 promoted the proliferation of HCC cells in vitro.

Figure 2. Upregulation of miR-922 promotes HCC cell proliferation. (A) Validation of miR-922 expression levels after transfection of miR-922 mimic by PCR analysis. (B) MTT assays revealed that miR-922 increased the growth of Hep3B cells. (C) Representative micrographs (left) and quantification (right) of crystal violet-stained cell colonies. (D) Upreguation of miR-922 promoted the anchorage-independent growth of Hep3B cells. Representative micrographs (left) and quantification of colonies that were >0.1 mm (right). Each bar represents the mean of three independent experiments; *P<0.05.

Figure 3. Inhibition of miR-922 suppresses HCC cell proliferation. (A) Validation of miR-922 expression levels after transfection of its inhibitor miR-922-in by PCR analysis. (B) MTT assays revealed that miR-922-in suppressed the growth of Hep3B cells. (C) Representative micrographs (left) and quantification (right) of crystal violet-stained cell colonies. (D) miR-922-in inhibited the anchorage-independent growth of Hep3B cells. Representative micrographs (left) and quantification of colonies that were >0.1 mm (right). Each bar represents the mean of three independent experiments; *P<0.05.

miR-922 directly targets CYLD by binding to its 3′UTR and alters levels of proteins related to cell proliferation in Hep3B cells

In order to confirm whether CYLD is the direct target of miR-4262, we identified CYLD as a potential target of miR-922 using bioinformatic analysis (TargetScan). We found that the 3′UTR of CYLD was complementary to the miR-922 seed region (Fig. 4A). Hep3B cells were transfected with miR-922 mimic, miR-922-in or negative controls, and the effect of miR-922 or miR-922-in on the expression of CYLD was detected by western blotting. The results indicated that CYLD protein expression was significantly decreased in the Hep3B cells stably expressing miR-922, whereas CYLD protein expression was markedly increased by miR-922-in (Fig. 4B). In addition, we tested whether miR-922 directly targets CYLD by luciferase reporter assay. The results showed that overexpression of miR-922 markedly reduced the luciferase activity of the CYLD wild-type 3′UTR, whereas miR-922-in increased this activity, and the luciferase activity of the CYLD wild-type 3′UTR was not affected by the miR-922-mut (Fig. 4C), indicating that miR-922 can bind to the CYLD 3′UTR. Collectively, these results demonstrated that CYLD is a direct target of miR-922.

Figure 4. miR-922 suppresses CYLD expression by directly targeting the CYLD 3′UTR and alters the levels of proteins related to proliferation in Hep3B cells. (A) Predicted miR-922 target sequence in the 3′UTR of CYLD (CYLD-3′UTR) and the positions of three mutated nucleotides (red) in the 3′UTR of miR-922-mut. (B) CYLD protein expression in Hep3B cells transfected with miR-922 or miR-922-in was detected by western blot analysis. α-tubulin served as the loading control. (C) Luciferase reporter assay of Hep3B cells transfected with the pGL3-CYLD-3′UTR reporter and miR-922 or miR-922-in or miR-922-mut with increasing amounts (10 and 50 nM) of oligonucleotides. (D) Real-time PCR analysis of the expression of cyclin D1 and MYC in Hep3B cells. (E) Western blot analysis of protein expression of cyclin D1, C-Myc, p-Rb and Rb in the different Hep3B cells. α-tubulin was used to serve as the loading control; *P<0.05.

CYLD was reported to negatively regulate NF-κB activity, and Jun N-terminal kinase and Wnt/β-catenin signaling pathways (11–13)

In the present study, we evaluated the mRNA of the CYLD downstream genes (cyclin D1, c-Myc, Rb and p-Rb). Results of quantitative PCR revealed a significant increase in the mRNA levels of cyclin D1 and c-Myc, while miR-922-in showed the opposite effect in the Hep3B cells (Fig. 4D). Western blot analysis showed that the levels of cyclin D1 and c-Myc were increased while the level of p-Rb was decreased in the miR-922 group compared with the miR-NC group, while miR-922-in showed the opposite function (Fig. 4E). Taken together, our results demonstrated that miR-922 functionally modulated CYLD, and then regulated cellular proliferation regulators, cyclin D1, c-Myc and p-Rb, thus relevant to cell proliferation. These results demonstrated that miR-922 could combine with CYLD 3′UTR and play a role in suppressing the expression of the CYLD gene.

CYLD downregulation counteracts the cell proliferation arrest by miR-922-in

CYLD protein expression was suppressed in the miR-922-in transfected Hep3B cells using CYLD-siRNA (Fig. 5A). Knockdown of CYLD enhanced cell colony formation and anchorage-independent growth ability of miR-922-in-transfected Hep3B cells (Fig. 5B and C). Taken together, these results suggest that the tumor-suppressive effect of miR-922-in is mediated by regulation of CYLD in HCC.

Figure 5. CYLD downregulation counteracts the cell proliferation arrest by miR-922-in. (A) Western blot analysis verified that silencing of CYLD effectively decreased the expression of CYLD in the miR-922-in-transfected Hep3B cells. (B) miR-922-in-transfected Hep3B cells after transfection with CYLD-siRNA increased cell colony formation. (C) miR-922-in-transfected Hep3B cells after transfection with CYLD-siRNA had increased anchorage-independent growth. Representative micrographs (left) and quantification of colonies that were >0.1 mm (right). Each bar represents the mean of three independent experiments; *P<0.05.

Discussion

In the present study, we characterized the functional significance of miR-922 in hepatocellular carcinoma (HCC). We demonstrated that miR-922 expression was upregulated in HCC cell lines and clinical tissues. Moreover, ectopic miR-922 expression promoted cell proliferation of the Hep3B cells. Furthermore, miR-922 overexpression increased Hep3B cell colony formation and anchorage-independent growth ability. Additionally, we identified cylindromatosis (CYLD) as a direct target of miR-922. Knockdown of CYLD counteracted the cell proliferation arrest by miR-922-in in the HCC Hep3B cells. These results indicated that miR-922 may function as an oncogene in HCC.

An increasing number of studies indicated that dysregulation of miRNAs plays essential roles in multiple biological processes, such as cell invasion, migration, proliferation, apoptosis, cell cycle and angiogenesis (14–16). miR-765 was found to promote HCC cell proliferation (17). miR-1180 was reported to be significantly increased and to promote the proliferation of HCC (18). Furthermore, miR-379-5p acted as a tumor suppressor and inhibited cell invasion and metastasis in HCC (19). Zhou et al indicated that miR-761 was upregulated and regulated tumorigenesis in HCC (20). However, to date, the biological function and regulatory mechanisms of miR-922 in HCC tumorigenesis have not been elucidated. Currently, we demonstrated that miR-922 acts as a tumor promoter and promotes the cell proliferation of HCC.

The CYLD gene encoding a deubiquitinating enzyme, has been identified as a tumor-suppressor gene and is downregulated in many types of cancer, including HCCs, gliomas, melanoma and colon carcinomas (21–24). CYLD is a direct target of miR-454, the increased expression of which resulted in CYLD reduction and promoted cell proliferation of human colorectal cancer cells (25). miR-501-5p was reported to regulate CYLD expression and promote cell proliferation in human HCC (26). However, whether miR-922 can directly target CYLD in HCC remains unknown. In the present study, the results of the bioinformatic analysis indicated sequence complementarity between miR-922 and the 3′UTR of CYLD and was confirmed by luciferase assays. Further experiment revealed that knockdown of CYLD by siRNA counteracted the cell proliferation arrest by miR-922-in. These results suggest that miR-922 directly regulates CYLD expression in HCC.

In summary, the present study indicated that miR-922 promoted HCC cell proliferation by suppressing CYLD expression and offers a new insight into the mechanisms of miR-922 in HCC, suggesting that miR-922 could be a potential therapeutic target in HCC.

Acknowledgements

The present study was supported by the Guangzhou Major Projects on Collaborative Innovation of Industry (1561000198).

References