|
1
|
Podgaec S, Abrao MS, Dias JA Jr, Rizzo LV,
de Oliveira RM and Baracat EC: Endometriosis: An inflammatory
disease with a Th2 immune response component. Hum Reprod.
22:1373–1379. 2007. View Article : Google Scholar : PubMed/NCBI
|
|
2
|
Braun DP and Dmowski WP: Endometriosis:
Abnormal endometrium and dysfunctional immune response. Curr Opin
Obstet Gynecol. 10:365–369. 1998. View Article : Google Scholar : PubMed/NCBI
|
|
3
|
Sha G, Wu D, Zhang L, Chen X, Lei M, Sun
H, Lin S and Lang J: Differentially expressed genes in human
endometrial endothelial cells derived from eutopic endometrium of
patients with endometriosis compared with those from patients
without endometriosis. Hum Reprod. 22:3159–3169. 2007. View Article : Google Scholar : PubMed/NCBI
|
|
4
|
Kato N, Sasou S and Motoyama T: Expression
of hepatocyte nuclear factor-1beta (HNF-1beta) in clear cell tumors
and endometriosis of the ovary. Mod Pathol. 19:83–89. 2006.
View Article : Google Scholar : PubMed/NCBI
|
|
5
|
Kvaskoff M, Mu F, Terry KL, Harris HR,
Poole EM, Farland L and Missmer SA: Endometriosis: A high-risk
population for major chronic diseases? Hum Reprod Update.
21:500–516. 2015. View Article : Google Scholar : PubMed/NCBI
|
|
6
|
Ahn SH, Monsanto SP, Miller C, Singh SS,
Thomas R and Tayade C: Pathophysiology and immune dysfunction in
endometriosis. Biomed Res Int. 2015:7959762015. View Article : Google Scholar : PubMed/NCBI
|
|
7
|
Hamosh A, Scott AF, Amberger JS, Bocchini
CA and McKusick VA: Online mendelian inheritance in man (OMIM), a
knowledgebase of human genes and genetic disorders. Nucleic Acids
Res. 33(Database issue): D514–D517. 2005. View Article : Google Scholar : PubMed/NCBI
|
|
8
|
Stenson PD, Mort M, Ball EV, Howells K,
Phillips AD, Thomas NS and Cooper DN: The human gene mutation
database: 2008 pdate. Genome Med. 1:132009. View Article : Google Scholar : PubMed/NCBI
|
|
9
|
Becker KG, Barnes KC, Bright TJ and Wang
SA: The genetic association database. Nature Genet. 36:431–432.
2004. View Article : Google Scholar : PubMed/NCBI
|
|
10
|
Wall DP, Pivovarov R, Tong M, Jung JY,
Fusaro VA, DeLuca TF and Tonellato PJ: Genotator: A
disease-agnostic tool for genetic annotation of disease. BMC Med
Genomics. 3:502010. View Article : Google Scholar : PubMed/NCBI
|
|
11
|
Bauer-Mehren A, Rautschka M, Sanz F and
Furlong LI: DisGeNET: A Cytoscape plugin to visualize, integrate,
search and analyze gene-disease networks. Bioinformatics.
26:2924–2926. 2010. View Article : Google Scholar : PubMed/NCBI
|
|
12
|
Lim J, Hao T, Shaw C, Patel AJ, Szabó G,
Rual JF, Fisk CJ, Li N, Smolyar A, Hill DE, et al: A
protein-protein interaction network for human inherited ataxias and
disorders of Purkinje cell degeneration. Cell. 125:801–814. 2006.
View Article : Google Scholar : PubMed/NCBI
|
|
13
|
Pujana MA, Han JD, Starita LM, Stevens KN,
Tewari M, Ahn JS, Rennert G, Moreno V, Kirchhoff T, Gold B, et al:
Network modeling links breast cancer susceptibility and centrosome
dysfunction. Nat Genet. 39:1338–1349. 2007. View Article : Google Scholar : PubMed/NCBI
|
|
14
|
Jia P, Kao CF, Kuo PH and Zhao Z: A
comprehensive network and pathway analysis of candidate genes in
major depressive disorder. BMC Syst Biol. 5 Suppl 3:S122011.
View Article : Google Scholar : PubMed/NCBI
|
|
15
|
Vidal M, Cusick ME and Barabási AL:
Interactome networks and human disease. Cell. 144:986–998. 2011.
View Article : Google Scholar : PubMed/NCBI
|
|
16
|
Wu G, Feng X and Stein L: A human
functional protein interaction network and its application to
cancer data analysis. Genome Biol. 11:R532010. View Article : Google Scholar : PubMed/NCBI
|
|
17
|
Schadt EE: Molecular networks as sensors
and drivers of common human diseases. Nature. 461:218–223. 2009.
View Article : Google Scholar : PubMed/NCBI
|
|
18
|
Ding Y, Chen M, Liu Z, Ding D, Ye Y, Zhang
M, Kelly R, Guo L, Su Z, Harris SC, et al: atBioNet-an integrated
network analysis tool for genomics and biomarker discovery. BMC
Genomics. 13:3252012. View Article : Google Scholar : PubMed/NCBI
|
|
19
|
Stark C, Breitkreutz BJ, Chatr-Aryamontri
A and Tyers M: The BioGRID Interaction Database: 2011 pdate.
Nucleic Acids Res. 39(Database issue): D698–D704. 2010.PubMed/NCBI
|
|
20
|
Xenarios I, Rice DW, Salwinski L, Baron
MK, Marcotte EM and Eisenberg D: DIP: The database of interacting
proteins. Nucleic Acids Res. 28:289–291. 2000. View Article : Google Scholar : PubMed/NCBI
|
|
21
|
Prasad TS Keshava, Goel R, Kandasamy K,
Keerthikumar S, Kumar S, Mathivanan S, Telikicherla D, Raju R,
Shafreen B, Venugopal A, et al: Human protein reference
database-2009 update. Nucleic Acids Res. 37(Database issue):
D767–D772. 2009. View Article : Google Scholar : PubMed/NCBI
|
|
22
|
Aranda B, Achuthan P, Alam-Faruque Y,
Armean I, Bridge A, Derow C, Feuermann M, Ghanbarian AT, Kerrien S,
Khadake J, et al: The IntAct molecular interaction database in
2010. Nucleic Acids Res. 38(Database issue): D525–D531. 2010.
View Article : Google Scholar : PubMed/NCBI
|
|
23
|
Licata L, Briganti L, Peluso D, Perfetto
L, Iannuccelli M, Galeota E, Sacco F, Palma A, Nardozza AP,
Santonico E, et al: MINT, the molecular interaction database: 2012
pdate. Nucleic Acids Res. 40(Database issue): D857–D861. 2012.
View Article : Google Scholar : PubMed/NCBI
|
|
24
|
Matthews L, Gopinath G, Gillespie M, Caudy
M, Croft D, de Bono B, Garapati P, Hemish J, Hermjakob H, Jassal B,
et al: Reactome knowledgebase of human biological pathways and
processes. Nucleic Acids Res. 37(Database issue): D619–D622. 2009.
View Article : Google Scholar : PubMed/NCBI
|
|
25
|
Elkon R, Vesterman R, Amit N, Ulitsky I,
Zohar I, Weisz M, Mass G, Orlev N, Sternberg G, Blekhman R, et al:
SPIKE-a database, visualization and analysis tool of cellular
signaling pathways. BMC bioinformatics. 9:1102008. View Article : Google Scholar : PubMed/NCBI
|
|
26
|
Xu X, Yuruk N, Feng Z and Schweiger T:
SCAN: A structural clustering algorithm for networks. Proceedings
of the 13th ACM SIGKDD international conference on Knowledge
Discovery and Data Mining. ACM. San Jose, CA. pp. 824–833.
2007;
|
|
27
|
Kanehisa M and Goto S: KEGG: Kyoto
encyclopedia of genes and genomes. Nucleic Acids Res. 28:27–30.
2000. View Article : Google Scholar : PubMed/NCBI
|
|
28
|
Hwang JH, Oh JJ, Wang T, Jin YC, Lee JS,
Choi JR, Lee KS, Joo JK and Lee HG: Identification of biomarkers
for endometriosis in eutopic endometrial cells from patients with
endometriosis using a proteomics approach. Mol Med Rep. 8:183–188.
2013. View Article : Google Scholar : PubMed/NCBI
|
|
29
|
Wei WD, Ruan F, Tu FX, Zhou CY and Lin J:
Expression of suppressor of cytokine signaling-3 and caspase-3 in
endometriosis and their correlation. Zhonghua Bing Li Xue Za Zhi.
42:515–518. 2013.(In Chinese). PubMed/NCBI
|
|
30
|
Hayrabedyan S, Kyurkchiev S and Kehayov I:
Endoglin (cd105) and S100A13 as markers of active angiogenesis in
endometriosis. Reprod Biol. 5:51–67. 2005.PubMed/NCBI
|
|
31
|
Hou Z, Zhou J, Ma X, Fan L, Liao L and Liu
J: Role of interleukin-1 receptor type II in the pathogenesis of
endometriosis. Fertil Steril. 89:42–51. 2008. View Article : Google Scholar : PubMed/NCBI
|
|
32
|
Selam B, Kayisli UA, Garcia-Velasco JA and
Arici A: Extracellular matrix-dependent regulation of Fas ligand
expression in human endometrial stromal cells. Biol Reprod. 66:1–5.
2002. View Article : Google Scholar : PubMed/NCBI
|
|
33
|
Osteen KG, Yeaman GR and Bruner-Tran KL:
Matrix metalloproteinases and endometriosis. Semin Reprod Med.
21:155–164. 2003. View Article : Google Scholar : PubMed/NCBI
|
|
34
|
de Bakker PI, McVean G, Sabeti PC, Miretti
MM, Green T, Marchini J, Ke X, Monsuur AJ, Whittaker P, Delgado M,
et al: A high-resolution HLA and SNP haplotype map for disease
association studies in the extended human MHC. Nat Genet.
38:1166–1172. 2006. View
Article : Google Scholar : PubMed/NCBI
|
|
35
|
Kumar H, Kawai T and Akira S: Toll-like
receptors and innate immunity. Biochem Biophys Res Commun.
388:621–625. 2009. View Article : Google Scholar : PubMed/NCBI
|
|
36
|
Hsieh YY, Chang CC, Chen SY, Chen CP, Lin
WH and Tsai FJ: XRCC1 399 Arg-related genotype and allele, but not
XRCC1 His107Arg, XRCC1 Trp194Arg, KCNQ2, AT1R and hOGG1
polymorphisms, are associated with higher susceptibility of
endometriosis. Gynecol Endocrinol. 28:305–309. 2012. View Article : Google Scholar : PubMed/NCBI
|
|
37
|
Jiang QY and Wu RJ: Growth mechanisms of
endometriotic cells in implanted places: A review. Gynecol
Endocrinol. 28:562–567. 2012. View Article : Google Scholar : PubMed/NCBI
|
|
38
|
Vlahos NF, Economopoulos KP and Fotiou S:
Endometriosis, in vitro fertilisation and the risk of
gynaecological malignancies, including ovarian and breast cancer.
Best Pract Res Clin Obstet Gynaecol. 24:39–50. 2010. View Article : Google Scholar : PubMed/NCBI
|
|
39
|
Pollacco J, Sacco K, Portelli M,
Schembri-Wismayer P and Calleja-Agius J: Molecular links between
endometriosis and cancer. Gynecol Endocrinol. 28:577–581. 2012.
View Article : Google Scholar : PubMed/NCBI
|
|
40
|
Jiang X, Hitchcock A, Bryan EJ, Watson RH,
Englefield P, Thomas EJ and Campbell IG: Microsatellite analysis of
endometriosis reveals loss of heterozygosity at candidate ovarian
tumor suppressor gene loci. Cancer Res. 56:3534–3539.
1996.PubMed/NCBI
|
|
41
|
Hsieh YY, Chang CC, Tsai FJ, Hsu CM, Lin
CC and Tsai CH: Interleukin-2 receptor beta (IL-2R beta)-627*C
homozygote but not IL-12R beta 1 codon 378 or IL-18 105
polymorphism is associated with higher susceptibility to
endometriosis. Fertil Steril. 84:510–512. 2005. View Article : Google Scholar : PubMed/NCBI
|
|
42
|
Ayaz L, Celik SK, Cayan F, Aras-Ates N and
Tamer L: Functional association of interleukin-18 gene −607 C/A
promoter polymorphisms with endometriosis. Fertil Steril.
95:298–300. 2011. View Article : Google Scholar : PubMed/NCBI
|
|
43
|
Monsanto SP, Edwards AK, Zhou J,
Nagarkatti P, Nagarkatti M, Young SL, Lessey BA and Tayade C:
Surgical removal of endometriotic lesions alters local and systemic
proinflammatory cytokines in endometriosis patients. Fertil Steril.
105:968–977. 2016. View Article : Google Scholar : PubMed/NCBI
|
|
44
|
Harada T, Iwabe T and Terakawa N: Role of
cytokines in endometriosis. Fertil Steril. 76:1–10. 2001.
View Article : Google Scholar : PubMed/NCBI
|
|
45
|
Shuai K and Liu B: Regulation of JAK-STAT
signalling in the immune system. Nat Rev Immunol. 3:900–911. 2003.
View Article : Google Scholar : PubMed/NCBI
|
|
46
|
Petrilli V, Dostert C, Muruve DA and
Tschopp J: The inflammasome: A danger sensing complex triggering
innate immunity. Curr Opin Immunol. 19:615–622. 2007. View Article : Google Scholar : PubMed/NCBI
|
|
47
|
Harada M, Osuga Y, Hirata T, Hirota Y,
Koga K, Yoshino O, Morimoto C, Fujiwara T, Momoeda M, Yano T, et
al: Concentration of osteoprotegerin (OPG) in peritoneal fluid is
increased in women with endometriosis. Hum Reprod. 19:2188–2191.
2004. View Article : Google Scholar : PubMed/NCBI
|
|
48
|
Nissinen L and Kähäri VM: Matrix
metalloproteinases in inflammation. Biochim Biophys Acta.
1840:2571–2580. 2014. View Article : Google Scholar : PubMed/NCBI
|
|
49
|
Cominelli A, Chevronnay HP Gaide, Lemoine
P, Courtoy PJ, Marbaix E and Henriet P: Matrix metalloproteinase-27
is expressed in CD163+/CD206+ M2 macrophages in the cycling human
endometrium and in superficial endometriotic lesions. Mol Hum
Reprod. 20:767–775. 2014. View Article : Google Scholar : PubMed/NCBI
|
|
50
|
Nagase H, Visse R and Murphy G: Structure
and function of matrix metalloproteinases and TIMPs. Cardiovasc
Res. 69:562–573. 2006. View Article : Google Scholar : PubMed/NCBI
|
|
51
|
Mu L, Zheng W, Wang L, Chen XJ, Zhang X
and Yang JH: Alteration of focal adhesion kinase expression in
eutopic endometrium of women with endometriosis. Fertil Steril.
89:529–537. 2008. View Article : Google Scholar : PubMed/NCBI
|
|
52
|
Celik O, Hascalik S, Elter K, Tagluk ME,
Gurates B and Aydin NE: Combating endometriosis by blocking
proteasome and nuclear factor-kappaB pathways. Hum Reprod.
23:2458–2465. 2008. View Article : Google Scholar : PubMed/NCBI
|
|
53
|
Nothnick WB: Treating endometriosis as an
autoimmune disease. Fertil Steril. 76:223–231. 2001. View Article : Google Scholar : PubMed/NCBI
|
|
54
|
Kitawaki J, Obayashi H, Kado N, Ishihara
H, Koshiba H, Maruya E, Saji H, Ohta M, Hasegawa G, Nakamura N, et
al: Association of HLA class I and class II alleles with
susceptibility to endometriosis. Hum Immunol. 63:D1033–D1038. 2002.
View Article : Google Scholar
|
|
55
|
Zhang X, Sharma RK, Agarwal A and Falcone
T: Effect of pentoxifylline in reducing oxidative stress-induced
embryotoxicity. J Assist Reprod Genet. 22:415–417. 2005. View Article : Google Scholar : PubMed/NCBI
|
|
56
|
Wood RD, Mitchell M, Sgouros J and Lindahl
T: Human DNA repair genes. Science. 291:1284–1289. 2001. View Article : Google Scholar : PubMed/NCBI
|
|
57
|
Hsu CM, Chang WS, Hwang JJ, Wang JY, Hsiao
YL, Tsai CW, Liu JC, Ying TH and Bau DT: The role of
apurinic/apyrimidinic endonuclease DNA repair gene in
endometriosis. Cancer Genomics Proteomics. 11:295–301.
2014.PubMed/NCBI
|
|
58
|
Brem R and Hall J: XRCC1 is required for
DNA single-strand break repair in human cells. Nucleic Acids Res.
33:2512–2520. 2005. View Article : Google Scholar : PubMed/NCBI
|
