|
1
|
Plantinga L, Lim SS, Patzer R, McClellan
W, Kramer M, Klein M, Pastan S, Gordon C, Helmick C and Drenkard C:
Incidence of end-stage renal disease among newly diagnosed systemic
lupus erythematosus patients: The georgia lupus registry. Arthritis
Care Res (Hoboken). 68:357–365. 2016. View Article : Google Scholar : PubMed/NCBI
|
|
2
|
Hahn BH, McMahon MA, Wilkinson A, Wallace
WD, Daikh DI, Fitzgerald JD, Karpouzas GA, Merrill JT, Wallace DJ,
Yazdany J, et al: American College of Rheumatology guidelines for
screening, treatment, and management of lupus nephritis. Arthritis
Care Res (Hoboken). 64:797–808. 2012. View Article : Google Scholar : PubMed/NCBI
|
|
3
|
Cameron JS: Lupus nephritis. J Am Soc
Nephrol. 10:413–424. 1999.PubMed/NCBI
|
|
4
|
Tsao BP: Genetic susceptibility to lupus
nephritis. Lupus. 7:585–590. 1998. View Article : Google Scholar : PubMed/NCBI
|
|
5
|
Frangou EA, Bertsias GK and Boumpas DT:
Gene expression and regulation in systemic lupus erythematosus. Eur
J Clin Invest. 43:1084–1096. 2013. View Article : Google Scholar : PubMed/NCBI
|
|
6
|
Hansen TB, Jensen TI, Clausen BH, Bramsen
JB, Finsen B, Damgaard CK and Kjems J: Natural RNA circles function
as efficient microRNA sponges. Nature. 495:384–388. 2013.
View Article : Google Scholar : PubMed/NCBI
|
|
7
|
Jeck WR, Sorrentino JA, Wang K, Slevin MK,
Burd CE, Liu J, Marzluff WF and Sharpless NE: Circular RNAs are
abundant, conserved, and associated with ALU repeats. RNA.
19:141–157. 2013. View Article : Google Scholar : PubMed/NCBI
|
|
8
|
Salzman J, Chen RE, Olsen MN, Wang PL and
Brown PO: Cell-type specific features of circular RNA expression.
PLoS Genet. 9:e10037772013. View Article : Google Scholar : PubMed/NCBI
|
|
9
|
Szabo L, Morey R, Palpant NJ, Wang PL,
Afari N, Jiang C, Parast MM, Murry CE, Laurent LC and Salzman J:
Statistically based splicing detection reveals neural enrichment
and tissue-specific induction of circular RNA during human fetal
development. Genome Biol. 16:1262015. View Article : Google Scholar : PubMed/NCBI
|
|
10
|
Wang YH, Yu XH, Luo SS and Han H:
Comprehensive circular RNA profiling reveals that circular
RNA100783 is involved in chronic CD28-associated CD8(+)T cell
ageing. Immun Ageing. 12:172015. View Article : Google Scholar : PubMed/NCBI
|
|
11
|
Lal N, White BS, Goussous G, Pickles O,
Mason MJ, Beggs AD, Taniere P, Willcox BE, Guinney J and Middleton
GW: KRAS mutation and consensus molecular subtypes 2 and 3 are
independently associated with reduced immune infiltration and
reactivity in colorectal cancer. Clin Cancer Res. 24:224–233. 2018.
View Article : Google Scholar : PubMed/NCBI
|
|
12
|
Ouyang Q, Wu J, Jiang Z, Zhao J, Wang R,
Lou A, Zhu D, Shi GP and Yang M: Microarray expression profile of
circular RNAs in peripheral blood mononuclear cells from rheumatoid
arthritis patients. Cell Physiol Biochem. 42:651–659. 2017.
View Article : Google Scholar : PubMed/NCBI
|
|
13
|
Zhang D, Fujio K, Jiang Y, Zhao J, Tada N,
Sudo K, Tsurui H, Nakamura K, Yamamoto K, Nishimura H, et al:
Dissection of the role of MHC class II A and E genes in autoimmune
susceptibility in murine lupus models with intragenic
recombination. Proc Natl Acad Sci USA. 101:13838–13843. 2004.
View Article : Google Scholar : PubMed/NCBI
|
|
14
|
Sitrin J, Suto E, Wuster A,
Eastham-Anderson J, Kim JM, Austin CD, Lee WP and Behrens TW: The
Ox40/Ox40 ligand pathway promotes pathogenic Th cell responses,
plasmablast accumulation, and lupus nephritis in NZB/W F1 mice. J
Immunol. 199:1238–1249. 2017. View Article : Google Scholar : PubMed/NCBI
|
|
15
|
Takemoto M, Asker N, Gerhardt H, Lundkvist
A, Johansson BR, Saito Y and Betsholtz C: A new method for large
scale isolation of kidney glomeruli from mice. Am J Pathol.
161:799–805. 2002. View Article : Google Scholar : PubMed/NCBI
|
|
16
|
Adachi H and Yu YT: Purification of
radiolabeled RNA products using denaturing gel electrophoresis.
Curr Protoc Mol Biol. 105:Unit 4.20. 2014. View Article : Google Scholar : PubMed/NCBI
|
|
17
|
Aranda PS, LaJoie DM and Jorcyk CL: Bleach
gel: A simple agarose gel for analyzing RNA quality.
Electrophoresis. 33:366–369. 2012. View Article : Google Scholar : PubMed/NCBI
|
|
18
|
Livak KJ and Schmittgen TD: Analysis of
relative gene expression data using real-time quantitative PCR and
the 2(-Delta Delta C(T)) method. Methods. 25:402–408. 2001.
View Article : Google Scholar : PubMed/NCBI
|
|
19
|
Salmena L, Poliseno L, Tay Y, Kats L and
Pandolfi PP: A ceRNA hypothesis: The Rosetta Stone of a hidden RNA
language? Cell. 146:353–358. 2011. View Article : Google Scholar : PubMed/NCBI
|
|
20
|
Phelps M, Coss C, Wang H and Cook M;
Reproducibility Project, : Cancer Biology; Reproducibility Project
Cancer Biology: Registered report: Coding-independent regulation of
the tumor suppressor PTEN by competing endogenous mRNAs. Elife.
5:2016. View Article : Google Scholar
|
|
21
|
Jin X, Feng CY, Xiang Z, Chen YP and Li
YM: CircRNA expression pattern and circRNA-miRNA-mRNA network in
the pathogenesis of nonalcoholic steatohepatitis. Oncotarget.
7:66455–66467. 2016. View Article : Google Scholar : PubMed/NCBI
|
|
22
|
Chen L, Zhang S, Wu J, Cui J, Zhong L,
Zeng L and Ge S: circRNA_100290 plays a role in oral cancer by
functioning as a sponge of the miR-29 family. Oncogene.
36:4551–4561. 2017. View Article : Google Scholar : PubMed/NCBI
|
|
23
|
Huang M, Zhong Z, Lv M, Shu J, Tian Q and
Chen J: Comprehensive analysis of differentially expressed profiles
of lncRNAs and circRNAs with associated co-expression and ceRNA
networks in bladder carcinoma. Oncotarget. 7:47186–47200.
2016.PubMed/NCBI
|
|
24
|
Friedman RC, Farh KK, Burge CB and Bartel
DP: Most mammalian mRNAs are conserved targets of microRNAs. Genome
Res. 19:92–105. 2009. View Article : Google Scholar : PubMed/NCBI
|
|
25
|
Garcia DM, Baek D, Shin C, Bell GW,
Grimson A and Bartel DP: Weak seed-pairing stability and high
target-site abundance decrease the proficiency of lsy-6 and other
microRNAs. Nat Struct Mol Biol. 18:1139–1146. 2011. View Article : Google Scholar : PubMed/NCBI
|
|
26
|
Grimson A, Farh KK, Johnston WK,
Garrett-Engele P, Lim LP and Bartel DP: MicroRNA targeting
specificity in mammals: Determinants beyond seed pairing. Mol Cell.
27:91–105. 2007. View Article : Google Scholar : PubMed/NCBI
|
|
27
|
Enright AJ, John B, Gaul U, Tuschl T,
Sander C and Marks DS: MicroRNA targets in Drosophila. Genome Biol.
5:R12003. View Article : Google Scholar : PubMed/NCBI
|
|
28
|
Li JH, Liu S, Zhou H, Qu LH and Yang JH:
starBase v2.0: Decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA
interaction networks from large-scale CLIP-Seq data. Nucleic Acids
Res. 42:D92–D97. 2014. View Article : Google Scholar : PubMed/NCBI
|
|
29
|
Xia P, Wang S, Ye B, Du Y, Li C, Xiong Z,
Qu Y and Fan Z: A circular RNA protects dormant hematopoietic stem
cells from DNA Sensor cGAS-mediated exhaustion. Immunity.
48:688.e7–701.e7. 2018. View Article : Google Scholar
|
|
30
|
Chen I, Chen CY and Chuang TJ: Biogenesis,
identification, and function of exonic circular RNAs. Wiley
Interdiscip Rev RNA. 6:563–579. 2015. View Article : Google Scholar : PubMed/NCBI
|
|
31
|
Wilusz JE and Sharp PA: Molecular biology.
A circuitous route to noncoding RNA. Science. 340:440–441. 2013.
View Article : Google Scholar : PubMed/NCBI
|
|
32
|
Thomas LF and Sætrom P: Circular RNAs are
depleted of polymorphisms at microRNA binding sites.
Bioinformatics. 30:2243–2246. 2014. View Article : Google Scholar : PubMed/NCBI
|
|
33
|
Dudekula DB, Panda AC, Grammatikakis I, De
S, Abdelmohsen K and Gorospe M: CircInteractome: A web tool for
exploring circular RNAs and their interacting proteins and
microRNAs. RNA Biol. 13:34–42. 2016. View Article : Google Scholar : PubMed/NCBI
|
|
34
|
Chang TC, Wentzel EA, Kent OA,
Ramachandran K, Mullendore M, Lee KH, Feldmann G, Yamakuchi M,
Ferlito M, Lowenstein CJ, et al: Transactivation of miR-34a by p53
broadly influences gene expression and promotes apoptosis. Mol
Cell. 26:745–752. 2007. View Article : Google Scholar : PubMed/NCBI
|
|
35
|
Concepcion CP, Han YC, Mu P, Bonetti C,
Yao E, D'Andrea A, Vidigal JA, Maughan WP, Ogrodowski P and Ventura
A: Intact p53-dependent responses in miR-34-deficient mice. PLoS
Genet. 8:e10027972012. View Article : Google Scholar : PubMed/NCBI
|
|
36
|
Bao J, Li D, Wang L, Wu J, Hu Y, Wang Z,
Chen Y, Cao X, Jiang C, Yan W and Xu C: MicroRNA-449 and
microRNA-34b/c function redundantly in murine testes by targeting
E2F transcription factor-retinoblastoma protein (E2F-pRb) pathway.
J Biol Chem. 287:21686–21698. 2012. View Article : Google Scholar : PubMed/NCBI
|
|
37
|
Miret C, Molina R, Filella X,
García-Carrasco M, Claver G, Ingelmo M, Ballesta A and Font J:
Relationship of p53 with other oncogenes, cytokines and systemic
lupus erythematosus activity. Tumour Biol. 24:185–188. 2003.
View Article : Google Scholar : PubMed/NCBI
|
|
38
|
Luo S, Liu Y, Liang G, Zhao M, Wu H, Liang
Y, Qiu X, Tan Y, Dai Y, Yung S, et al: The role of microRNA-1246 in
the regulation of B cell activation and the pathogenesis of
systemic lupus erythematosus. Clin Epigenetics. 7:242015.
View Article : Google Scholar : PubMed/NCBI
|
|
39
|
Fu X, Tan D, Hou Z, Hu Z, Liu G, Ouyang Y
and Liu F: The effect of miR-338-3p on HBx deletion-mutant
(HBx-d382) mediated liver-cell proliferation through CyclinD1
regulation. PLoS One. 7:e432042012. View Article : Google Scholar : PubMed/NCBI
|
|
40
|
Magni S, Buoli Comani G, Elli L, Vanessi
S, Ballarini E, Nicolini G, Rusconi M, Castoldi M, Meneveri R,
Muckenthaler MU, et al: miRNAs affect the expression of innate and
adaptive immunity proteins in celiac disease. Am J Gastroenterol.
109:1662–1674. 2014. View Article : Google Scholar : PubMed/NCBI
|
|
41
|
Zhang X, Wang C, Li H, Niu X, Liu X, Pei
D, Guo X, Xu X and Li Y: miR-338-3p inhibits the invasion of renal
cell carcinoma by downregulation of ALK5. Oncotarget.
8:64106–64113. 2017.PubMed/NCBI
|
|
42
|
Benatti FB, Miyake CNH, Dantas WS,
Zambelli VO, Shinjo SK, Pereira RMR, Silva MER, Sá-Pinto AL, Borba
E, Bonfá E and Gualano B: Exercise increases insulin sensitivity
and skeletal muscle AMPK expression in systemic lupus
erythematosus: A randomized controlled trial. Front Immunol.
9:9062018. View Article : Google Scholar : PubMed/NCBI
|
|
43
|
Schuiveling M, Vazirpanah N, Radstake
TRDJ, Zimmermann M and Broen JCA: Metformin, a new era for an old
drug in the treatment of immune mediated disease? Curr Drug
Targets. 19:945–959. 2018. View Article : Google Scholar : PubMed/NCBI
|
|
44
|
Badr G, Sayed A, Abdel-Maksoud MA, Mohamed
AO, El-Amir A, Abdel-Ghaffar FA, Al-Quraishy S and Mahmoud MH:
Infection of female BWF1 lupus mice with malaria parasite
attenuates B cell autoreactivity by modulating the CXCL12/CXCR4
axis and its downstream signals PI3K/AKT, NFκB and ERK. PLoS One.
10:e01253402015. View Article : Google Scholar : PubMed/NCBI
|
|
45
|
Beşliu AN, Pistol G, Marica CM, Bănică LM,
Chiţonu C, Ionescu R, Tănăseanu C, Tamsulea I, Matache C and
Stefănescu M: PI3K/Akt signaling in peripheral T lymphocytes from
systemic lupus erythematosus patients. Roum Arch Microbiol Immunol.
68:69–79. 2009.PubMed/NCBI
|
|
46
|
Qingjuan L, Xiaojuan F, Wei Z, Chao W,
Pengpeng K, Hongbo L, Sanbing Z, Jun H, Min Y and Shuxia L:
miR-148a-3p overexpression contributes to glomerular cell
proliferation by targeting PTEN in lupus nephritis. Am J Physiol
Cell Physiol. 310:C470–C478. 2016. View Article : Google Scholar : PubMed/NCBI
|
|
47
|
Adalid-Peralta L, Mathian A, Tran T,
Delbos L, Durand-Gasselin I, Berrebi D, Peuchmaur M, Couderc J,
Emilie D and Koutouzov S: Leukocytes and the kidney contribute to
interstitial inflammation in lupus nephritis. Kidney Int.
73:172–180. 2008. View Article : Google Scholar : PubMed/NCBI
|
|
48
|
Schiffer L, Bethunaickan R, Ramanujam M,
Huang W, Schiffer M, Tao H, Madaio MP, Bottinger EP and Davidson A:
Activated renal macrophages are markers of disease onset and
disease remission in lupus nephritis. J Immunol. 180:1938–1947.
2008. View Article : Google Scholar : PubMed/NCBI
|
|
49
|
Ichinose K, Rauen T, Juang YT, Kis-Toth K,
Mizui M, Koga T and Tsokos GC: Cutting edge:
Calcium/Calmodulin-dependent protein kinase type IV is essential
for mesangial cell proliferation and lupus nephritis. J Immunol.
187:5500–5504. 2011. View Article : Google Scholar : PubMed/NCBI
|
