|
1
|
Ferlay J, Soerjomataram I, Dikshit R, Eser
S, Mathers C, Rebelo M, Parkin DM, Forman D and Bray F: Cancer
incidence and mortality worldwide: Sources methods and major
patterns in GLOBOCAN 2012. Int J Cancer. 136:E359–E386. 2015.
View Article : Google Scholar
|
|
2
|
Chong Y, Mia-Jan K, Ryu H, Abdul-Ghafar J,
Munkhdelger J, Lkhagvadorj S, Jung SY, Lee M, Ji SY and Choi E: DNA
methylation status of a distinctively different subset of genes is
associated with each histologic Lauren classification subtype in
early gastric carcinogenesis. Oncol Rep. 31:2535–2544. 2014.
View Article : Google Scholar
|
|
3
|
Lei Li Z, Luo H, Wang M, Dong Y, Ma L, Liu
Y, Song C, Wang W and Zhang FJ: DNA methylation downregulated
mir-10b acts as a tumor suppressor in gastric cancer. Gastric
Cancer. 18:43–54. 2015. View Article : Google Scholar
|
|
4
|
Ng EK, Chong WW, Jin H, Lam EK, Shin VY,
Yu J, Poon TC, Ng SS and Sung JJ: Differential expression of
microRNAs in plasma of patients with colorectal cancer: A potential
marker for colorectal cancer screening. Gut. 58:1375–1381. 2009.
View Article : Google Scholar
|
|
5
|
Oue N, Mitani Y, Motoshita J, Matsumura S,
Yoshida K, Kuniyasu H, Nakayama H and Yasui W: Accumulation of DNA
methylation is associated with tumor stage in gastric cancer.
Cancer. 106:1250–1259. 2006. View Article : Google Scholar
|
|
6
|
Yamamoto E, Suzuki H, Takamaru H, Yamamoto
H, Toyota M and Shinomura Y: Role of DNA methylation in the
development of diffuse-type gastric cancer. Digestion. 83:241–249.
2011. View Article : Google Scholar
|
|
7
|
Choi J, Cho MY, Jung SY, Jan KM and Kim
HS: CpG Island methylation according to the histologic patterns of
early gastric adenocarcinoma. Korean J Pathol. 2011.469–476. 2011.
View Article : Google Scholar
|
|
8
|
Sapari NS, Loh M, Vaithilingam A and Soong
R: Clinical potential of DNA methylation in gastric cancer: A
meta-analysis. PLoS One. 7:e362752012. View Article : Google Scholar
|
|
9
|
Pirini F, Noazin S, Jahuira-Arias MH,
Rodriguez-Torres S, Friess L, Michailidi C, Cok J, Combe J, Vargas
G and Prado W: Early detection of gastric cancer using global,
genome-wide and IRF4, ELMO1, CLIP4 and MSC DNA methylation in
endoscopic biopsies. Oncotarget. 8:38501–38516. 2017. View Article : Google Scholar
|
|
10
|
Feshchenko EA, Smirnova EV, Swaminathan G,
Teckchandani AM, Agrawal R, Band H, Zhang X, Annan RS, Carr SA and
Tsygankov AY: TULA: An SH3- and UBA-containing protein that binds
to c-Cbl and ubiquitin. Oncogene. 23:4690–4706. 2004. View Article : Google Scholar
|
|
11
|
Kowanetz K, Crosetto N, Haglund K, Schmidt
MH, Heldin CH and Dikic I: Suppressors of T-cell receptor signaling
Sts-1 and Sts-2 bind to Cbl and inhibit endocytosis of receptor
tyrosine kinases. J Biol Chem. 279:32786–32795. 2004. View Article : Google Scholar
|
|
12
|
Tsygankov AY: TULA-family proteins: A new
class of cellular regulators. J Cell Physiol. 228:43–49. 2013.
View Article : Google Scholar
|
|
13
|
Agrawal R, Carpino N and Tsygankov A: TULA
proteins regulate activity of the protein tyrosine kinase Syk. J
Cell Biochem. 104:953–964. 2008. View Article : Google Scholar
|
|
14
|
Chuang JY, Huang YL, Yen WL, Chiang IP,
Tsai MH and Tang CH: Syk/JNK/AP-1 signaling pathway mediates
interleukin-6-promoted cell migration in oral squamous cell
carcinoma. Int J Mol Sci. 15:545–559. 2014. View Article : Google Scholar
|
|
15
|
Luangdilok S, Box C, Patterson L, Court W,
Harrington K, Pitkin L, Rhŷs-Evans P, O-charoenrat P and Eccles S:
Syk tyrosine kinase is linked to cell motility and progression in
squamous cell carcinomas of the head and neck. Cancer Res.
67:7907–7916. 2007. View Article : Google Scholar
|
|
16
|
Holz C, Niehr F, Boyko M, Hristozova T,
Distel L, Budach V and Tinhofer I:
Epithelial-mesenchymal-transition induced by EGFR activation
interferes with cell migration and response to irradiation and
cetuximab in head and neck cancer cells. Radiother Oncol.
101:158–164. 2011. View Article : Google Scholar
|
|
17
|
Lee ST, Feng M, Wei Y, Li Z, Qiao Y, Guan
P, Jiang X, Wong CH, Huynh K and Wang J: Protein tyrosine
phosphatase UBASH3B is overexpressed in triple-negative breast
cancer and promotes invasion and metastasis. Proc Natl Acad Sci
USA. 110:11121–11126. 2013. View Article : Google Scholar
|
|
18
|
Zouridis H, Deng N, Ivanova T, Zhu Y, Wong
B, Huang D, Wu YH, Wu Y, Tan IB, Liem N, et al: Methylation
subtypes and large-scale epigenetic alterations in gastric cancer.
Sci Transl Med. 4:156ra1402012. View Article : Google Scholar
|
|
19
|
Ritchie ME, Phipson B, Wu D, Hu Y, Law CW,
Shi W and Smyth GK: limma powers differential expression analyses
for RNA-sequencing and microarray studies. Nucleic Acids Res.
43:e472015. View Article : Google Scholar
|
|
20
|
Musci RJ, Masyn KE, Uhl G, Maher B, Kellam
SG and Ialongo NS: Polygenic score x intervention moderation: An
application of discrete-time survival analysis to modeling the
timing of first tobacco use among urban youth. Dev Psychopathol.
27:111–122. 2015. View Article : Google Scholar
|
|
21
|
Therneau TM and Grambsch PM: Modeling
Survival Data: Extending the Cox Model. Springer; New York, NY:
2000
|
|
22
|
Bao ZS, Li MY, Wang JY, Zhang CB, Wang HJ,
Yan W, Liu YW, Zhang W, Chen L and Jiang T: Prognostic value of a
nine-gene signature in glioma patients based on mRNA expression
profiling. CNS Neurosci Ther. 20:112–118. 2014. View Article : Google Scholar
|
|
23
|
Cheng W, Ren X, Cai J, Zhang C, Li M, Wang
K, Liu Y, Han S and Wu A: A five-miRNA signature with prognostic
and predictive value for MGMT promoter-methylated glioblastoma
patients. Oncotarget. 6:29285–29295. 2015. View Article : Google Scholar
|
|
24
|
Zhang CB, Zhu P, Yang P, Cai JQ, Wang ZL,
Li QB, Bao ZS, Zhang W and Jiang T: Identification of high risk
anaplastic gliomas by a diagnostic and prognostic signature derived
from mRNA expression profiling. Oncotarget. 6:36643–36651.
2015.
|
|
25
|
Huang W, Sherman BT and Lempicki RA:
Bioinformatics enrichment tools: Paths toward the comprehensive
functional analysis of large gene lists. Nucleic Acids Res.
37:1–13. 2009. View Article : Google Scholar
|
|
26
|
Huang W, Sherman BT and Lempicki RA:
Systematic and integrative analysis of large gene lists using DAVID
bioinformatics resources. Nat Protoc. 4:44–57. 2009. View Article : Google Scholar
|
|
27
|
Mootha VK, Lindgren CM, Eriksson K-F,
Subramanian A, Sihag S, Lehar J, Puigserver P, Carlsson E,
Ridderstråle M and Laurila E: PGC-1alpha-responsive genes involved
in oxidative phosphorylation are coordinately downregulated in
human diabetes. Nat Genet. 34:267–273. 2003. View Article : Google Scholar
|
|
28
|
Subramanian A, Tamayo P, Mootha VK,
Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub
TR and Lander ES: Gene set enrichment analysis: A knowledge-based
approach for interpreting genome-wide expression profiles. Proc
Natl Acad Sci USA. 102:15545–15550. 2005. View Article : Google Scholar
|
|
29
|
Ahn J, Han KS, Heo JH, Bang D, Kang YH,
Jin HA, Hong SJ, Lee JH and Ham WS: FOXC2 and CLIP4 : A potential
biomarker for synchronous metastasis of ≤7-cm clear cell renal cell
carcinomas. Oncotarget. 7:51423–51434. 2016. View Article : Google Scholar
|
|
30
|
Hudson TJ, Anderson W, Artez A, Barker AD,
Bell C, Bernabé RR, Bhan MK, Calvo F, Eerola I, Gerhard DS, et al:
International Cancer Genome Consortium: International network of
cancer genome projects. Nature. 464:993–998. 2010. View Article : Google Scholar
|
|
31
|
Yang Y, Han L, Yuan Y, Li J, Hei N and
Liang H: Gene co-expression network analysis reveals common
system-level properties of prognostic genes across cancer types.
Nat Commun. 5:32312014. View Article : Google Scholar
|
|
32
|
Barrett T, Troup DB, Wilhite SE, Ledoux P,
Rudnev D, Evangelista C, Kim IF, Soboleva A, Tomashevsky M and
Marshall KA: NCBI GEO: Archive for high-throughput functional
genomic data. Nucleic Acids Res. 37:D885–D890. 2009. View Article : Google Scholar
|
|
33
|
Agarwal R, Mori Y, Cheng Y, Jin Z, Olaru
AV, Hamilton JP, David S, Selaru FM, Yang J, Abraham JM, et al:
Silencing of claudin-11 is associated with increased invasiveness
of gastric cancer cells. PLoS One. 4:e80022009. View Article : Google Scholar
|
|
34
|
Weinstein RS, Merk FB and Alroy J: The
structure and function of intercellular junctions in cancer. Adv
Cancer Res. 23:23–89. 1976. View Article : Google Scholar
|
|
35
|
Hewitt KJ, Agarwal R and Morin PJ: The
claudin gene family: Expression in normal and neoplastic tissues.
BMC Cancer. 6:1862006. View Article : Google Scholar
|
|
36
|
Morin PJ: Claudin proteins in human
cancer: Promising new targets for diagnosis and therapy. Cancer
Res. 65:9603–9606. 2005. View Article : Google Scholar
|
|
37
|
Provost PR, Villeneuve L, Weech PK, Milne
RW, Marcel YL and Rassart E: Localization of the major sites of
rabbit apolipoprotein D gene transcription by in situ
hybridization. J Lipid Res. 32:1959–1970. 1991.
|
|
38
|
Rassart E, Bedirian A, Do Carmo S, Guinard
O, Sirois J, Terrisse L and Milne R: Apolipoprotein d. Biochimica
et Biophysica Acta (BBA). Protein Struct Mol Enzymol. 1482:185–198.
2000. View Article : Google Scholar
|
|
39
|
Muffat J, Walker DW and Benzer S: Human
ApoD, an apolipoprotein up-regulated in neurodegenerative diseases,
extends lifespan and increases stress resistance in Drosophila.
Proc Natl Acad Sci USA. 105:7088–7093. 2008. View Article : Google Scholar
|
|
40
|
Terrisse L, Poirier J, Bertrand P, Merched
A, Visvikis S, Siest G, Milne R and Rassart E: Increased levels of
apolipoprotein D in cerebrospinal fluid and hippocampus of
Alzheimer’s patients. J Neurochem. 71:1643–1650. 1998. View Article : Google Scholar
|
|
41
|
Pei YF, Zhang YJ, Lei Y, Wu DW, Ma TH and
Liu XQ: Hypermethylation of the CHRDL1 promoter induces
proliferation and metastasis by activating Akt and Erk in gastric
cancer. Oncotarget. 8:23155–23166. 2017.
|
|
42
|
Wang Z, Shen Z, Li Z, Duan J, Fu S, Liu Z,
Bai H, Zhang Z, Zhao J and Wang X: Activation of the BMP-BMPR
pathway conferred resistance to EGFR-TKIs in lung squamous cell
carcinoma patients with EGFR mutations. Proc Natl Acad Sci USA.
112:9990–9995. 2015. View Article : Google Scholar
|
|
43
|
Lei H, Wang J, Lu P, Si X, Han K, Ruan T
and Lu J: BMP10 inhibited the growth and migration of gastric
cancer cells. Tumour Biol. 37:3025–3031. 2016. View Article : Google Scholar
|
|
44
|
Sawala A, Sutcliffe C and Ashe HL:
Multistep molecular mechanism for bone morphogenetic protein
extracellular transport in the Drosophila embryo. Proc Natl Acad
Sci USA. 109:11222–11227. 2012. View Article : Google Scholar
|
|
45
|
Watanabe T, Nagai A, Sheikh AM, Mitaki S,
Wakabayashi K, Kim SU, Kobayashi S and Yamaguchi S: A human neural
stem cell line provides neuroprotection and improves neurological
performance by early intervention of neuroinflammatory system.
Brain Res. 1631:194–203. 2016. View Article : Google Scholar
|
