|
1
|
Ogino S, Chan AT, Fuchs CS and Giovannucci
E: Molecular pathological epidemiology of colorectal neoplasia: An
emerging transdisciplinary and interdisciplinary field. Gut.
60:397–411. 2011. View Article : Google Scholar : PubMed/NCBI
|
|
2
|
Siegel R, Desantis C and Jemal A:
Colorectal cancer statistics, 2014. CA Cancer J Clin. 64:104–117.
2014. View Article : Google Scholar : PubMed/NCBI
|
|
3
|
Jia WH, Zhang B, Matsuo K, Shin A, Xiang
YB, Jee SH, Kim DH, Ren Z, Cai Q, Long J, et al: Genome-wide
association analyses in East Asians identify new susceptibility
loci for colorectal cancer. Nat Genet. 45:191–196. 2013. View Article : Google Scholar : PubMed/NCBI
|
|
4
|
Yuan JH, Yang F, Wang F, Ma JZ, Guo YJ,
Tao QF, Liu F, Pan W, Wang TT, Zhou CC, et al: A long noncoding RNA
activated by TGF-β promotes the invasion-metastasis cascade in
hepatocellular carcinoma. Cancer Cell. 25:666–681. 2014. View Article : Google Scholar : PubMed/NCBI
|
|
5
|
Mercer TR, Dinger ME and Mattick JS: Long
non-coding RNAs: Insights into functions. Nat Rev Genet.
10:155–159. 2009. View
Article : Google Scholar : PubMed/NCBI
|
|
6
|
Prensner JR, Iyer MK, Sahu A, Asangani IA,
Cao Q, Patel L, Vergara IA, Davicioni E, Erho N, Ghadessi M, et al:
The long noncoding RNA SChLAP1 promotes aggressive prostate cancer
and antagonizes the SWI/SNF complex. Nat Genet. 45:1392–1398. 2013.
View Article : Google Scholar : PubMed/NCBI
|
|
7
|
Ling H, Spizzo R, Atlasi Y, Nicoloso M,
Shimizu M, Redis RS, Nishida N, Gafà R, Song J, Guo Z, et al:
CCAT2, a novel noncoding RNA mapping to 8q24, underlies metastatic
progression and chromosomal instability in colon cancer. Genome
Res. 23:1446–1461. 2013. View Article : Google Scholar : PubMed/NCBI
|
|
8
|
Svoboda M, Slyskova J, Schneiderova M,
Makovicky P, Bielik L, Levy M, Lipska L, Hemmelova B, Kala Z,
Protivankova M, et al: HOTAIR long non-coding RNA is a negative
prognostic factor not only in primary tumors, but also in the blood
of colorectal cancer patients. Carcinogenesis. 35:1510–1515. 2014.
View Article : Google Scholar : PubMed/NCBI
|
|
9
|
Ge X, Chen Y, Liao X, Liu D, Li F, Ruan H
and Jia W: Overexpression of long noncoding RNA PCAT-1 is a novel
biomarker of poor prognosis in patients with colorectal cancer. Med
Oncol. 30:5882013. View Article : Google Scholar : PubMed/NCBI
|
|
10
|
Zheng HT, Shi DB, Wang YW, Li XX, Xu Y,
Tripathi P, Gu WL, Cai GX and Cai SJ: High expression of lncRNA
MALAT1 suggests a biomarker of poor prognosis in colorectal cancer.
Int J Clin Exp Pathol. 7:3174–3181. 2014.PubMed/NCBI
|
|
11
|
Du Z, Fei T, Verhaak RG, Su Z, Zhang Y,
Brown M, Chen Y and Liu XS: Integrative genomic analyses reveal
clinically relevant long noncoding RNAs in human cancer. Nat Struct
Mol Biol. 20:908–913. 2013. View Article : Google Scholar : PubMed/NCBI
|
|
12
|
Liao Q, Liu C, Yuan X, Kang S, Miao R,
Xiao H, Zhao G, Luo H, Bu D, Zhao H, et al: Large-scale prediction
of long non-coding RNA functions in a coding-non-coding gene
co-expression network. Nucleic Acids Res. 39:3864–3878. 2011.
View Article : Google Scholar : PubMed/NCBI
|
|
13
|
Gellert P, Ponomareva Y, Braun T and
Uchida S: Noncoder: A web interface for exon array-based detection
of long non-coding RNAs. Nucleic Acids Res. 41:e202013. View Article : Google Scholar : PubMed/NCBI
|
|
14
|
Bu D, Yu K, Sun S, Xie C, Skogerbø G, Miao
R, Xiao H, Liao Q, Luo H, Zhao G, et al: NONCODE v3.0: Integrative
annotation of long noncoding RNAs. Nucleic Acids Res. 40:(Database
Issue). D210–D215. 2012. View Article : Google Scholar : PubMed/NCBI
|
|
15
|
Lambert J and Chevret S: Summary measure
of discrimination in survival models based on cumulative/dynamic
time-dependent ROC curves. Stat Methods Med Res. 2014.
|
|
16
|
Yang M, Tian J, Guo X, Yang Y, Guan R, Qiu
M, Li Y, Sun X, Zheng Y, Zhang Y, et al: Long noncoding RNA are
aberrantly expressed in human papillary thyroid carcinoma. Oncol
Lett. 12:544–552. 2016.PubMed/NCBI
|
|
17
|
Batista PJ and Chang HY: Long noncoding
RNAs: Cellular address codes in development and disease. Cell.
152:1298–1307. 2013. View Article : Google Scholar : PubMed/NCBI
|
|
18
|
Ching T, Huang S and Garmire LX: Power
analysis and sample size estimation for RNA-Seq differential
expression. RNA. 20:1684–1696. 2014. View Article : Google Scholar : PubMed/NCBI
|
|
19
|
Li J, Chen Z, Tian L, Zhou C, He MY, Gao
Y, Wang S, Zhou F, Shi S, Feng X, et al: LncRNA profile study
reveals a three-lncRNA signature associated with the survival of
patients with oesophageal squamous cell carcinoma. Gut.
63:1700–1710. 2014. View Article : Google Scholar : PubMed/NCBI
|
|
20
|
Xu X, Zhang Y, Williams J, Antoniou E,
McCombie WR, Wu S, Zhu W, Davidson NO, Denoya P and Li E: Parallel
comparison of Illumina RNA-Seq and Affymetrix microarray platforms
on transcriptomic profiles generated from 5-aza-deoxy-cytidine
treated HT-29 colon cancer cells and simulated datasets. BMC
Bioinformatics. 14(Suppl 9): S12013. View Article : Google Scholar : PubMed/NCBI
|
|
21
|
Michelhaugh SK, Lipovich L, Blythe J, Jia
H, Kapatos G and Bannon MJ: Mining Affymetrix microarray data for
long non-coding RNAs: Altered expression in the nucleus accumbens
of heroin abusers. J Neurochem. 116:459–466. 2011. View Article : Google Scholar : PubMed/NCBI
|
|
22
|
Zhang X, Sun S, Pu JK, Tsang AC, Lee D,
Man VO, Lui WM, Wong ST and Leung GK: Long non-coding RNA
expression profiles predict clinical phenotypes in glioma.
Neurobiol Dis. 48:1–8. 2012. View Article : Google Scholar : PubMed/NCBI
|
|
23
|
Risueno A, Fontanillo C, Dinger ME and De
Las Rivas J: GATExplorer: Genomic and transcriptomic explorer;
mapping expression probes to gene loci, transcripts, exons and
ncRNAs. BMC Bioinformatics. 11:2212010. View Article : Google Scholar : PubMed/NCBI
|
|
24
|
Liao Q, Xiao H, Bu D, Xie C, Miao R, Luo
H, Zhao G, Yu K, Zhao H, Skogerbø G, et al: ncFANs: A web server
for functional annotation of long non-coding RNAs. Nucleic Acids
Res. 39:(Web Server Issue). W118–W124. 2011. View Article : Google Scholar : PubMed/NCBI
|
|
25
|
Quagliata L, Matter MS, Piscuoglio S,
Arabi L, Ruiz C, Procino A, Kovac M, Moretti F, Makowska Z,
Boldanova T, et al: Long noncoding RNA HOTTIP/HOXA13 expression is
associated with disease progression and predicts outcome in
hepatocellular carcinoma patients. Hepatology. 59:911–923. 2014.
View Article : Google Scholar : PubMed/NCBI
|
|
26
|
Woo Y, Affourtit J, Daigle S, Viale A,
Johnson K, Naggert J and Churchill G: A comparison of cDNA,
oligonucleotide, and Affymetrix GeneChip gene expression microarray
platforms. J Biomol Tech. 15:276–284. 2004.PubMed/NCBI
|
