Identification of a novel breast cancer‑causing mutation in the BRCA1 gene by targeted next generation sequencing: A case report

  • Authors:
    • Yanyan Wang
    • Da Jiang
    • Qiang Zhao
    • Hui Huang
    • Xue Zhang
    • Yanzhi Cui
    • Jiayin Liu
    • Jing Wu
    • Keke Lin
    • Weixi Chen
    • Jiale Xiang
    • Hui Jin
    • Zhiyu Peng
    • Santasree Banerjee
  • View Affiliations

  • Published online on: July 12, 2018     https://doi.org/10.3892/ol.2018.9139
  • Pages: 3913-3916
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Abstract

Hereditary breast cancer is an autosomal dominant syndrome caused by germ‑line mutations in the human breast cancer genes, BRCA1 and BRCA2. Mutations in either BRCA1 or BRCA2 are the major causes of familial and early‑onset breast cancer. The present study investigated a 33‑year‑old Chinese female patient with breast cancer using targeted next generation sequencing. A novel heterozygous deletion‑insertion was also identified in the BRCA1 gene, c.311_312delinsAGGTTTGCA, which causes the formation of a truncated BRCA1 protein of 109 amino acids instead of a wild‑type BRCA1 protein of 1,863 amino acids. These results could potentially expand the mutational spectra of BRCA1‑associated breast cancer. In addition, these findings may be valuable for the mutation‑based screening and genetic diagnosis of breast cancer.

Introduction

Hereditary breast cancer (HBC) is an autosomal dominant familial and early-onset breast cancer syndrome manifested by a gradual and exponential risk of developing breast and ovarian cancer. HBC is primarily caused by mutations in the BRCA1 and BRCA2 genes. The BRCA1 protein has a major function in the DNA repair system (1). The present study investigated a 33-year-old Chinese female patient with HBC using targeted next generation sequencing (NGS). Through genetic testing, one deletion-insertion mutation (c.311_312delinsAGGTTTGCA) in the BRCA1 gene was detected, and it was revealed that this was a typical family of inherited tumors following detection of the highest likelihood of mutation in the proband's family members. The proband's uncle and uncle's daughter carry the same mutation as the proband and therefore, it was considered that the proband's father, who had succumbed, and the proband's aunt, who was diagnosed with triple-negative breast cancer (TNBC), may exhibit the same mutation. This deletion-insertion mutation (c.311_312delinsAGGTTTGCA) causes the formation of a truncated BRCA1 protein of 109 amino acids instead of a wild type BRCA1 protein of 1863 amino acids. Hence, this mutation is a loss-of-function mutation.

Case report

The proband is a 33-year-old Chinese female from non-consanguineous parents. The proband was diagnosed with breast cancer and enrolled in the present study. Clinical diagnosis was based on the patient's clinical history. The diagnosis for the patient, TNBC, was supported by her previous clinical information. The present study was performed in the Department of Internal Medicine, The Fourth Hospital of Hebei Medical University (Shijiazhuang, China).

In February 2015, a mass ~2 cm in diameter was identified in the patient's left breast. No other abnormalities were identified during physical examination. The laboratory examination results were within the normal range. Breast-conserving surgery and sentinel lymph node biopsy revealed that the left breast tumor was 1.8 cm in diameter; the breast metaplastic cancer lacked vascular tumor thrombus metastasis of the sentinel lymph nodes with negative margins. H&E staining is presented in Fig. 1A-C, with the following immunohistochemistry: Estrogen receptor (ER), 0; progesterone receptor (PR), 0; human epidermal growth factor 2 (HER2), 0; tumor protein p53 (P53), 60%; Ki-67, 50%; type II topoisomerase (TOMOII), 30%; creatine kinase (CK), +; vimentin (Vim), +; S-100 calcium binding protein (S-100), +; synuclein (Syn), -; and cluster of differentiation 56 (CD56), −/+, belonging to TNBC, as shown in the Fig. 1D-N. The post-operative staging was IA (T1cN0M0) (2). Pathology revealed invasive cancer of the left breast with an extensive area of necrosis. The patient was treated with paclitaxel (90–120 mg/m2) intravenously for 12 weeks, followed by cyclophosphamide treatment (200 mg/m2) for 12 weeks.

The proband was clinically diagnosed with TNBC at the age of 31 (Fig. 1O, patient III-1) and underwent genetic testing at the age of 33. One mutation in the BRCA1 gene was detected. As detailed knowledge of the proband's family history was acquired, it was revealed that the proband's father and grandfather were deceased (Fig. 2, I-2 and II-2, respectively); the cause and age of mortality were unknown. The proband's mother was >50 years of age and healthy (Fig. 2, II-1). The proband's aunt was diagnosed with TNBC at the age of 47 and succumbed at the age of 50 (Fig. 2, II-5). The pathological type of the proband was the same as that of her aunt. In addition, the proband has a healthy uncle (Fig. 2, II-4).

Prior to performing pedigree verification, it was inferred that there are several hypotheses: i) The proband's aunt and father each carried an identical mutation in the BRCA1 gene, which was inherited from proband's grandfather or grandmother; in this situation, the proband's uncle has a 50% probability of also carrying this mutation; ii) the mutation exhibited by the proband was inherited from her mother, who was a carrier that did not suffer from cancer; in which case, the proband's aunt who had cancer might have been a sporadic case; or she has other mutations iii) the mutation exhibited by the proband was not inherited from her parents, but was de novo; the proband's aunt's breast cancer is not associated with this mutation.

As the grandmother of the proband (Fig. 2, I-1) refused to undergo genetic testing, and the proband's aunt and father were already deceased, samples from the proband's mother were tested initially. It was revealed that the mother of the proband did not carry any mutations in the BRCA1 gene and therefore, the first hypothesis was highly suspected. Next, verification was performed with the proband's uncle, the proband's uncle's daughter (Fig. 2, III-2), and the proband's aunt's daughter (Fig. 2, III-3). It was revealed that the proband's uncle and the proband's uncle's daughter carry the same mutation as the proband. This result confirms the first hypothesis. The uncle of the proband was 54 years old, the proband's uncle's daughter was 28 years old, and the two of them were healthy. A risk management scheme was provided for them to facilitate early cancer detection, prevention and risk of developing the disease in following generations.

Diagnosis and treatment

In March 26, 2015, the proband received paclitaxel liposome (180 mg, intravenously, day 1). Due to the presence of proteinuria, chemotherapy was suspended and radiotherapy was administered. At the end-point of the study (July 2017), no tumor recurrence had been observed.

Following written informed consent being obtained, a sample of the proband's peripheral blood was collected and genomic DNA was extracted. Targeted NGS was performed with a panel of 21 genes (BRCA1, BRCA2, CHEK2, PALB2, BRIP1, TP53, PTEN, STK11, CDH1, ATM, BARD1, MLH1, MRE11A, MSH2, MSH6, MUTYH, NBN, PMS1, PMS2, RAD50, RAD51C) with a target area of 172,959 bp. The coverage and the depth of the target area was 99.49% and 586.13× respectively.

A novel heterozygous mutation (c.311_312delinsAGGTTTGCA) was identified in the proband. MutationTaster version 2 (http://www.mutationtaster.org/) predicted that this mutation causes the formation of a premature stop codon which leads to a frameshift followed by the formation of a truncated BRCA1 protein (3). This mutation was confirmed by Sanger sequencing (Fig. 3A and B); Fig. 3A presents the wild-type result, while Fig. 3B presents the proband's result, which revealed the mutation. This mutation was not present in the Human Gene Mutation database (www.hgmd.cf.ac.uk) or OMIM (omim.org). The mutation was not identified in the BGI database, which contains ~30,000 Chinese Han samples (www.genomics.cn/en/).

Discussion

The present study investigated a 33-year-old Chinese female with HBC. A heterozygous novel heterozygous deletion-insertion (c.311_312delinsAGGTTTGCA) in the BRCA1 gene was identified in the proband. This mutation causes formation of a truncated BRCA1 protein with 109 amino acids instead of the wild-type of the BRCA1 protein with 1,863 amino acids.

Genetic screening for BRCA1 and BRCA2 genes and identification of novel variants serves a key role for timely diagnosis, proper counseling, successive follow-up and management of disease (4). By contrast, a large number of variants of unknown clinical significance (VUS) in the BRCA1 and BRCA2 genes has been identified in the patients and their family members by NGS. Functional characterization of germ-line mutations at transcriptional or translational levels is required to understand the dominant negative effect of the mutation in functional wild-type proteins (5).

BRCA1 gene mutations have a 60–80% probability of causing breast cancer in females; these mutations also increase the risk of developing ovarian cancer in females and prostate cancer in males. Germ-line mutations in the BRCA2 gene are observed in ~35% of families with early-onset breast cancer in females; these mutations lead to an increased risk of developing ovarian cancer in females and breast cancer in males (6). Breast cancer caused by a mutation in the BRCA1 gene has a higher incidence, higher mitotic rate and more lymphatic penetrance than sporadic breast cancer (7). These types of cancer are more likely to lack expression of ER, PR and HER-2nue receptors, and to have a somatic mutation in the P53 gene (710). In addition to having an increased risk of developing breast cancer, BRCA1 or BRCA2 gene mutation carriers have an increased risk for other types of cancer, including colon, prostate, pancreatic, melanoma and gastric cancer (11,12). Novel mutations in the BRCA1 and BRCA2 genes are very rare, as 2,000 mutations have been discovered in these two genes so far. The most common mutation forms are small insertions, small deletions, nonsense mutations, missense mutations, premature transcription terminations and splicing troubles. Deletion and insertion mutations lead to a frame shift. According to the Breast Information Core, the majority of the breast cancer-causing mutations in the BRCA1 and BRCA2 genes lead to the production of truncated protein through nonsense, frame shift and splicing mutations (13).

However, BRCA1 and BRCA2 genes associated with human breast and ovarian cancer occur with an autosomal dominant mode of inheritance and late onset of age. Therefore, genetic screening for patients and their family members are the key factors for the proper clinical management, accurate follow-up and understanding of the disease risk for all the family members. Additionally, prenatal genetic screening, as well as prenatal diagnosis for the family members with breast and ovarian cancer, would be a great step in the future in order to reduce the risk of disease occurrence in the successive generations in a family with several patients with BRCA1/2-associated breast/ovarian cancer.

Acknowledgements

Not applicable.

Funding

No funding was received.

Availability of data and materials

The datasets used and/or analyzed in the present study are available from the corresponding author upon reasonable request.

Authors' contributions

SB, ZP, DJ designed and coordinated the study. DJ, QZ, XZ, YC, JL and HJ assessed the clinical findings of the cases. YW, HH, JW, KL, WC and JX performed the molecular genetic studies and analyzed the data. YW and WC wrote the draft of the manuscript with input from the other co-authors. All authors read and approved the final manuscript.

Ethics approval and consent to participate

All study participants provided written informed consent and the study design was approved by an Institutional Ethics Review Board of the Department of Internal Medicine, The Fourth Hospital of Hebei Medical University (Shijiazhuang, China).

Patient consent for publication

Not applicable.

Competing interests

The authors declare that they have no competing interests.

References

1 

Narod SA and Foulkes WD: BRCA1 and BRCA2: 1994 and beyond. Nat Rev Cancer. 4:665–676. 2004. View Article : Google Scholar : PubMed/NCBI

2 

Carlson RW, Goldstein LJ, Gradishar WJ, Lichter AS, McCormick B, Moe RE and Theriault RL: NCCN breast cancer practice guidelines. The National comprehensive cancer network. Oncology (Williston Park). 10 11 Suppl:S47–S75. 1996.

3 

Schwarz JM, Cooper DN, Schuelke M and Seelow D: MutationTaster2: Mutation prediction for the deep-sequencing age. Nat Methods. 11:361–362. 2014. View Article : Google Scholar : PubMed/NCBI

4 

Richter S, Haroun I, Graham TC, Eisen A, Kiss A and Warner E: Variants of unknown significance in BRCA testing: Impact on risk perception, worry, prevention and counseling. Ann Oncol. 24 Suppl 8:viii69–viii74. 2013. View Article : Google Scholar : PubMed/NCBI

5 

Ward AJ and Cooper TA: The pathobiology of splicing. J Pathol. 220:152–163. 2010.PubMed/NCBI

6 

Ayub SG, Rasool S, Ayub T, Khan SN, Wani KA and Andrabi KI: Mutational analysis of the BRCA2 gene in breast carcinoma patients of Kashmiri descent. Mol Med Rep. 9:749–753. 2014. View Article : Google Scholar : PubMed/NCBI

7 

Musolino A, Naldi N, Michiara M, Bella MA, Zanelli P, Bortesi B, Capelletti M, Savi M, Neri TM and Ardizzoni A: A breast cancer patient from Italy with germline mutations in both the BRCA1 and BRCA2 genes. Breast Cancer Res Treat. 91:203–205. 2005. View Article : Google Scholar : PubMed/NCBI

8 

Chen W, Pan K, Ouyang T, Li J, Wang T, Fan Z, Fan T, Lin B, Lu Y, You W and Xie Y: BRCA1 germline mutations and tumor characteristics in Chinese women with familial or early-onset breast cancer. Breast Cancer Res Treat. 117:55–60. 2009. View Article : Google Scholar : PubMed/NCBI

9 

Lakhani SR, Van De Vijver MJ, Jacquemier J, Anderson TJ, Osin PP, McGuffog L and Easton DF: The pathology of familial breast cancer: Predictive value of immunohistochemical markers estrogen receptor, progesterone receptor, HER-2, and p53 in patients with mutations in BRCA1 and BRCA2. J Clin Oncol. 20:2310–2318. 2002. View Article : Google Scholar : PubMed/NCBI

10 

Phillips KA: Immunophenotypic and pathologic differences between BRCA1 and BRCA2 hereditary breast cancers. J Clin Oncol. 18 21 Suppl:107S–112S. 2000.PubMed/NCBI

11 

Jancárková N, Zikán M, Pohlreich P, Freitag P, Matous B and Zivný J: Detection and occurrence of BRCA 1 gene mutation in patients with carcinoma of the breast and ovary. Ceska Gynekol. 68:11–16. 2003.(In Czech). PubMed/NCBI

12 

Dutil J, Colon-Colon JL, Matta JL, Sutphen R and Echenique M: Identification of the prevalent BRCA1 and BRCA2 mutations in the female population of Puerto Rico. Cancer Genet. 205:242–248. 2012. View Article : Google Scholar : PubMed/NCBI

13 

Pohlreich P, Zikan M, Stribrna J, Kleibl Z, Janatova M, Kotlas J, Zidovska J, Novotny J, Petruzelka L, Szabo C and Matous B: High proportion of recurrent germline mutations in the BRCA1 gene in breast and ovarian cancer patients from the Prague area. Breast Cancer Res. 7:R728–R736. 2005. View Article : Google Scholar : PubMed/NCBI

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Spandidos Publications style
Wang Y, Jiang D, Zhao Q, Huang H, Zhang X, Cui Y, Liu J, Wu J, Lin K, Chen W, Chen W, et al: Identification of a novel breast cancer‑causing mutation in the BRCA1 gene by targeted next generation sequencing: A case report. Oncol Lett 16: 3913-3916, 2018
APA
Wang, Y., Jiang, D., Zhao, Q., Huang, H., Zhang, X., Cui, Y. ... Banerjee, S. (2018). Identification of a novel breast cancer‑causing mutation in the BRCA1 gene by targeted next generation sequencing: A case report. Oncology Letters, 16, 3913-3916. https://doi.org/10.3892/ol.2018.9139
MLA
Wang, Y., Jiang, D., Zhao, Q., Huang, H., Zhang, X., Cui, Y., Liu, J., Wu, J., Lin, K., Chen, W., Xiang, J., Jin, H., Peng, Z., Banerjee, S."Identification of a novel breast cancer‑causing mutation in the BRCA1 gene by targeted next generation sequencing: A case report". Oncology Letters 16.3 (2018): 3913-3916.
Chicago
Wang, Y., Jiang, D., Zhao, Q., Huang, H., Zhang, X., Cui, Y., Liu, J., Wu, J., Lin, K., Chen, W., Xiang, J., Jin, H., Peng, Z., Banerjee, S."Identification of a novel breast cancer‑causing mutation in the BRCA1 gene by targeted next generation sequencing: A case report". Oncology Letters 16, no. 3 (2018): 3913-3916. https://doi.org/10.3892/ol.2018.9139