|
1
|
Centers for Disease and Control Prevention
(CDC), . Vital Signs: Colorectal cancer screening, incidence and
mortality-United States, 2002–2010. MMWR Morb Mortal Wkly Rep.
60:884–889. 2011.PubMed/NCBI
|
|
2
|
Okugawa Y, Grady WM and Goel A: Epigenetic
alterations in colorectal cancer: Emerging biomarkers.
Gastroenterology. 149:1204–1225. 2015. View Article : Google Scholar : PubMed/NCBI
|
|
3
|
Balaguer F, Link A, Lozano JJ, Cuatrecasas
M, Nagasaka T, Boland CR and Goel A: Epigenetic silencing of
miR-137 is an early event in colorectal carcinogenesis. Cancer Res.
70:6609–6618. 2010. View Article : Google Scholar : PubMed/NCBI
|
|
4
|
Ponting CP, Oliver PL and Reik W:
Evolution and functions of long noncoding RNAs. Cell. 136:629–641.
2009. View Article : Google Scholar : PubMed/NCBI
|
|
5
|
Zhang LM, Wang P, Liu XM and Zhang YJ:
LncRNA SUMO1P3 drives colon cancer growth, metastasis and
angiogenesis. Am J Transl Res. 9:5461–5472. 2017.PubMed/NCBI
|
|
6
|
Dianatpour A and Ghafouri-Fard S: The role
of long non coding RNAs in the repair of DNA double strand breaks.
Int J Mol Cell Med. 6:1–12. 2017.PubMed/NCBI
|
|
7
|
Espinoza CA, Goodrich JA and Kugel JF:
Characterization of the structure, function and mechanism of B2
RNA, an ncRNA repressor of RNA polymerase II transcription. RNA.
13:583–596. 2007. View Article : Google Scholar : PubMed/NCBI
|
|
8
|
Engreitz JM, Haines JE, Perez EM, Munson
G, Chen J, Kane M, McDonel PE, Guttman M and Lander ES: Local
regulation of gene expression by lncRNA promoters, transcription
and splicing. Nature. 539:452–455. 2016. View Article : Google Scholar : PubMed/NCBI
|
|
9
|
Reinius B, Shi C, Hengshuo L, Sandhu KS,
Radomska KJ, Rosen GD, Lu L, Kullander K, Williams RW and Jazin E:
Female-biased expression of long non-coding RNAs in domains that
escape X-inactivation in mouse. BMC Genomics. 11:6142010.
View Article : Google Scholar : PubMed/NCBI
|
|
10
|
Cancer Genome Atlas Research Network, .
Weinstein JN, Collisson EA, Mills GB, Shaw KR, Ozenberger BA,
Ellrott K, Shmulevich I, Sander C and Stuart JM: The cancer genome
atlas pan-cancer analysis project. Nat Genet. 45:1113–1120. 2013.
View Article : Google Scholar : PubMed/NCBI
|
|
11
|
Dennis G Jr, Sherman BT, Hosack DA, Yang
J, Gao W, Lane HC and Lempicki RA: DAVID: Database for annotation,
visualization and integrated discovery. Genome Biol. 4:P32003.
View Article : Google Scholar : PubMed/NCBI
|
|
12
|
Huang DW, Sherman BT and Lempicki RA:
Bioinformatics enrichment tools: Paths toward the comprehensive
functional analysis of large gene lists. Nucleic Acids Res.
37:1–13. 2009. View Article : Google Scholar : PubMed/NCBI
|
|
13
|
Huang da W, Sherman BT and Lempicki RA:
Systematic and integrative analysis of large gene lists using DAVID
bioinformatics resources. Nat Protoc. 4:44–57. 2009. View Article : Google Scholar : PubMed/NCBI
|
|
14
|
Franceschini A, Szklarczyk D, Frankild S,
Kuhn M, Simonovic M, Roth A, Lin J, Minguez P, Bork P, von Mering C
and Jensen LJ: STRING v9.1: Protein-protein interaction networks,
with increased coverage and integration. Nucleic Acids Res.
41:D808–D815. 2013. View Article : Google Scholar : PubMed/NCBI
|
|
15
|
Smoot ME, Ono K, Ruscheinski J, Wang PL
and Ideker T: Cytoscape 2.8: New features for data integration and
network visualization. Bioinformatics. 27:431–432. 2011. View Article : Google Scholar : PubMed/NCBI
|
|
16
|
Chin CH, Chen SH, Wu HH, Ho CW, Ko MT and
Lin CY: cytoHubba: Identifying hub objects and sub-networks from
complex interactome. BMC Syst Biol. 8 (Suppl 4):S112014. View Article : Google Scholar : PubMed/NCBI
|
|
17
|
Nepusz T, Yu H and Paccanaro A: Detecting
overlapping protein complexes in protein-protein interaction
networks. Nature Methods. 9:471–472. 2012. View Article : Google Scholar : PubMed/NCBI
|
|
18
|
Li JH, Liu S, Zhou H, Qu LH and Yang JH:
starBase v2.0: Decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA
interaction networks from large-scale CLIP-Seq data. Nucleic Acids
Res. 42:D92–D97. 2014. View Article : Google Scholar : PubMed/NCBI
|
|
19
|
Muppirala UK, Honavar VG and Drena D:
Predicting RNA-protein interactions using only sequence
information. BMC Bioinformatics. 12:4892011. View Article : Google Scholar : PubMed/NCBI
|
|
20
|
Li Y, Li Y, Chen W, He F, Tan Z, Zheng J,
Wang W, Zhao Q and Li J: NEAT expression is associated with tumor
recurrence and unfavorable prognosis in colorectal cancer.
Oncotarget. 6:27641–27650. 2015.PubMed/NCBI
|
|
21
|
Meng J, Li P, Zhang Q, Yang Z and Fu S: A
four-long non-coding RNA signature in predicting breast cancer
survival. J Exp Clin Cancer Res. 33:842014. View Article : Google Scholar : PubMed/NCBI
|
|
22
|
Shen Z, Li Q, Deng H, Lu D, Song H and Guo
J: Long non-coding RNA profiling in laryngeal squamous cell
carcinoma and its clinical significance: Potential biomarkers for
LSCC. PLoS One. 9:e1082372014. View Article : Google Scholar : PubMed/NCBI
|
|
23
|
Min W, Dai D, Wang J, Zhang D, Zhang Y,
Han G, Zhang L, Chen C, Li X, Li Y and Yue Z: Long noncoding RNA
miR210HG as a potential biomarker for the diagnosis of glioma. PLoS
One. 11:e01604512016. View Article : Google Scholar : PubMed/NCBI
|
|
24
|
Xia W, Ren X, Li B, Yue J and Long L:
Applying modularity analysis of PPI networks to sequenced
organisms. Virulence. 3:459–463. 2012. View Article : Google Scholar : PubMed/NCBI
|
|
25
|
Li J, Wu QM, Wang XQ and Zhang CQ: Long
noncoding RNA miR210HG sponges miR-503 to facilitate osteosarcoma
cell invasion and metastasis. DNA Cell Biol. 36:1117–1125. 2017.
View Article : Google Scholar : PubMed/NCBI
|
|
26
|
Serrano M, Lin AW, Mccurrach ME, Beach D
and Lowe SW: Oncogenic ras provokes premature cell senescence
associated with accumulation of p53 and p16INK4a. Cell. 88:593–602.
1997. View Article : Google Scholar : PubMed/NCBI
|
|
27
|
Harris GJ, Church JM, Senagore AJ, Lavery
IC, Hull TL, Strong SA and Fazio VW: Factors affecting local
recurrence of colonic adenocarcinoma. Dis Colon Rectum.
45:1029–1034. 2002. View Article : Google Scholar : PubMed/NCBI
|
|
28
|
Baxter NN, Virnig DJ, Rothenberger DA,
Morris AM, Jessurun J and Virnig BA: Lymph node evaluation in
colorectal cancer patients: A population-based study. J Natl Cancer
Inst. 97:219–225. 2005. View Article : Google Scholar : PubMed/NCBI
|
|
29
|
Lin CW, Li XR, Zhang Y, Hu G, Guo YH, Zhou
JY, Du J, Lv L, Gao K, Zhang Y and Deng H: TAp63 suppress
metastasis via miR-133b in colon cancer cells. Br J Cancer.
110:2310–2320. 2014. View Article : Google Scholar : PubMed/NCBI
|
|
30
|
Tan X, He X, Jiang Z, Wang X, Ma L, Liu L,
Wang X, Fan Z and Su D: Derlin-1 is overexpressed in human colon
cancer and promotes cancer cell proliferation. Mol Cell Biochem.
408:205–213. 2015. View Article : Google Scholar : PubMed/NCBI
|
|
31
|
Yue B, Qiu S, Zhao S, Liu C, Zhang D, Yu
F, Peng Z and Yan D: LncRNA-ATB mediated E-cadherin repression
promotes the progression of colon cancer and predicts poor
prognosis. J Gastroenterol Hepatol. 31:595–603. 2016. View Article : Google Scholar : PubMed/NCBI
|
|
32
|
Tracy KM, Tye CE, Ghule PN, Malaby HLH,
Stumpff J, Stein JL, Stein GS and Lian JB: Mitotically-associated
lncRNA (MANCR) affects genomic stability and cell division in
aggressive breast cancer. Mol Cancer Res. 16:587–598. 2018.
View Article : Google Scholar : PubMed/NCBI
|
|
33
|
Warburg O: On the origin of cancer cells.
Science. 123:309–314. 1956. View Article : Google Scholar : PubMed/NCBI
|
|
34
|
Song K, Li M, Xu X, Xuan LI, Huang G and
Liu Q: Resistance to chemotherapy is associated with altered
glucose metabolism in acute myeloid leukemia. Oncol Lett.
12:334–342. 2016. View Article : Google Scholar : PubMed/NCBI
|
|
35
|
Kawai K, Uemura M, Munakata K, Takahashi
H, Haraguchi N, Nishimura J, Hata T, Matsuda C, Ikenaga M, Murata
K, et al: Fructose-bisphosphate aldolase A is a key regulator of
hypoxic adaptation in colorectal cancer cells and involved in
treatment resistance and poor prognosis. Int J Oncol. 50:525–534.
2016. View Article : Google Scholar : PubMed/NCBI
|
|
36
|
Yang P and Li Z, Fu R, Wu H and Li Z:
Pyruvate kinase M2 facilitates colon cancer cell migration via the
modulation of STAT3 signalling. Cell Signal. 26:1853–1862. 2014.
View Article : Google Scholar : PubMed/NCBI
|
|
37
|
Zarnack K, Konig J, Tajnik M, Martincorena
I, Eustermann S, Stévant I, Reyes A, Anders S, Luscombe NM and Ule
J: Direct competition between hnRNP C and U2AF65 protects the
transcriptome from the exonization of Alu elements. Cell.
152:453–466. 2013. View Article : Google Scholar : PubMed/NCBI
|
|
38
|
Zhao M, Yang X, Fu Y, Wang H, Ning Y, Yan
J, Chen YG and Wang G: Mediator MED15 modulates transforming growth
factor beta (TGFβ)/Smad signaling and breast cancer cell
metastasis. J Mol Cell Biol. 5:57–60. 2013. View Article : Google Scholar : PubMed/NCBI
|
|
39
|
Wakefield A, Soukupova J, Montagne A,
Ranger J, French R, Muller WJ and Clarkson RW: Bcl3 selectively
promotes metastasis of ERBB2-driven mammary tumors. Cancer Res.
73:745–755. 2013. View Article : Google Scholar : PubMed/NCBI
|
