|
1
|
Chen W, Zheng R, Baade PD, Zhang S, Zeng
H, Bray F, Jemal A, Yu XQ and He J: Cancer statistics in China,
2015. CA Cancer J Clin. 66:115–132. 2016. View Article : Google Scholar : PubMed/NCBI
|
|
2
|
Chen W, Xia C, Zheng R, Zhou M, Lin C,
Zeng H, Zhang S, Wang L, Yang Z, Sun K, et al: Disparities by
province, age, and sex in site-specific cancer burden attributable
to 23 potentially modifiable risk factors in China: A comparative
risk assessment. Lancet Glob Health. 7:e257–e269. 2019. View Article : Google Scholar : PubMed/NCBI
|
|
3
|
Travis DW, Brambilla E, Burke AP, Marx A
and Nicholson AG: WHO classification of tumours of the lung,
pleura, thymus and heart. 4th edition. Lyon, France: IARC Press;
2015
|
|
4
|
Rolfo C, Castiglia M, Perez A, Reclusa P,
Pauwels P, Sober L, Passiglia F and Russo A: Liquid biopsy in
non-small cell lung cancer (NSCLC). In Liquid Biopsy in Cancer
Patients. 3rd edition. Giordano A, Russo A and Rolfo C: Springer
International Publishing AG; Cham, Switzerland: pp. 103–115.
2017
|
|
5
|
Siegel RL, Miller KD and Jemal A: Cancer
statistics, 2020. CA Cancer J Clin. 70:7–30. 2020. View Article : Google Scholar : PubMed/NCBI
|
|
6
|
Bray F, Ferlay J, Soerjomataram I, Siegel
RL, Torre LA and Jemal A: Global cancer statistics 2018: GLOBOCAN
estimates of incidence and mortality worldwide for 36 cancers in
185 countries. CA Cancer J Clin. 68:394–424. 2018. View Article : Google Scholar : PubMed/NCBI
|
|
7
|
Howlader N, Noone AM, Krapcho M, Miller D,
Bishop K, Altekruse SF, Kosary CL, Yu M, Ruhl J, Tatalovich Z, et
al: SEER cancer statistics review, 1975–2013, based on November
2015 SEER data submission, posted to the SEER web site, April 2016,
Bethesda, MD, National Cancer Institute. 2016.
|
|
8
|
Banerjee R, Chen S, Dare K, Gilreath M,
Praetorius-Ibba M, Raina M, Reynolds NM, Rogers T, Roy H, Yadavalli
SS and Ibba M: tRNAs: Cellular barcodes for amino acids. FEBS Lett.
584:387–395. 2010. View Article : Google Scholar : PubMed/NCBI
|
|
9
|
Lee YS, Shibata Y, Malhotra A and Dutta A:
A novel class of small RNAs: tRNA-derived RNA fragments (tRFs).
Genes Dev. 23:2639–2649. 2009. View Article : Google Scholar : PubMed/NCBI
|
|
10
|
Pekarsky Y, Balatti V, Palamarchuk A,
Rizzotto L, Veneziano D, Nigita G, Rassenti LZ, Pass HI, Kipps TJ,
Liu CG and Croce CM: Dysregulation of a family of short noncoding
RNAs, tsRNAs, in human cancer. Proc Natl Acad Sci USA.
113:5071–5076. 2016. View Article : Google Scholar : PubMed/NCBI
|
|
11
|
Anderson P and Ivanov P: tRNA fragments in
human health and disease. FEBS Lett. 588:4297–4304. 2014.
View Article : Google Scholar : PubMed/NCBI
|
|
12
|
Pliatsika V, Loher P, Telonis AG and
Rigoutsos I: MINTbase: A framework for the interactive exploration
of mitochondrial and nuclear tRNA fragments. Bioinformatics.
32:2481–2489. 2016. View Article : Google Scholar : PubMed/NCBI
|
|
13
|
Zheng LL, Xu WL, Liu S, Sun WJ, Li JH, Wu
J, Yang JH and Qu LH: tRF2Cancer: A web server to detect
tRNA-derived small RNA fragments (tRFs) and their expression in
multiple cancers. Nucleic Acids Res. 44((W1)): W185–W193. 2016.
View Article : Google Scholar : PubMed/NCBI
|
|
14
|
Blanco S, Dietmann S, Flores JV, Hussain
S, Kutter C, Humphreys P, Lukk M, Lombard P, Treps L, Popis M, et
al: Aberrant methylation of tRNAs links cellular stress to
neuro-developmental disorders. EMBO J. 33:2020–2039. 2014.
View Article : Google Scholar : PubMed/NCBI
|
|
15
|
Maute RL, Schneider C, Sumazin P, Holmes
A, Califano A, Basso K and Dalla-Favera R: tRNA-derived microRNA
modulates proliferation and the DNA damage response and is
down-regulated in B cell lymphoma. Proc Natl Acad Sci USA.
110:1404–1409. 2013. View Article : Google Scholar : PubMed/NCBI
|
|
16
|
Torres AG: Enjoy the silence: Nearly half
of human tRNA genes are silent. Bioinform Biol Insights.
13:11779322198684542019. View Article : Google Scholar : PubMed/NCBI
|
|
17
|
Zhu L, Ge J, Li T, Shen Y and Guo J:
tRNA-derived fragments and tRNA halves: The new players in cancers.
Cancer Lett. 452:31–37. 2019. View Article : Google Scholar : PubMed/NCBI
|
|
18
|
Li S, Xu Z and Sheng J: tRNA-derived small
RNA: A novel regulatory small non-coding RNA. Genes (Basel).
9:2462018. View Article : Google Scholar : PubMed/NCBI
|
|
19
|
Kumar P, Mudunuri SB, Anaya J and Dutta A:
tRFdb: A database for transfer RNA fragments. Nucleic Acids Res.
43:D141–D145. 2015. View Article : Google Scholar : PubMed/NCBI
|
|
20
|
Li S and Hu GF: Emerging role of
angiogenin in stress response and cell survival under adverse
conditions. J Cell Physiol. 227:2822–2826. 2012. View Article : Google Scholar : PubMed/NCBI
|
|
21
|
Karaiskos S, Naqvi AS, Swanson KE and
Grigoriev A: Age-driven modulation of tRNA-derived fragments in
Drosophila and their potential targets. Biol Direct.
10:512015. View Article : Google Scholar : PubMed/NCBI
|
|
22
|
Kumar P, Anaya J, Mudunuri SB and Dutta A:
Meta-analysis of tRNA derived RNA fragments reveals that they are
evolutionarily conserved and associate with AGO proteins to
recognize specific RNA targets. BMC Biol. 12:782014. View Article : Google Scholar : PubMed/NCBI
|
|
23
|
Luo S, He F, Luo J, Dou S, Wang Y, Guo A
and Lu J: Drosophila tsRNAs preferentially suppress general
translation machinery via antisense pairing and participate in
cellular starvation response. Nucleic Acids Res. 46:5250–5268.
2018. View Article : Google Scholar : PubMed/NCBI
|
|
24
|
Goodarzi H, Liu X, Nguyen HC, Zhang S,
Fish L and Tavazoie SF: Endogenous tRNA-derived fragments suppress
breast cancer progression via YBX1 displacement. Cell. 161:790–802.
2015. View Article : Google Scholar : PubMed/NCBI
|
|
25
|
Ivanov P, Emara MM, Villen J, Gygi SP and
Anderson P: Angiogenin-induced tRNA fragments inhibit translation
initiation. Mol Cell. 43:613–623. 2011. View Article : Google Scholar : PubMed/NCBI
|
|
26
|
Ivanov P, O'Day E, Emara MM, Wagner G,
Lieberman J and Anderson P: G-quadruplex structures contribute to
the neuroprotective effects of angiogenin-induced tRNA fragments.
Proc Natl Acad Sci USA. 111:18201–18206. 2014. View Article : Google Scholar : PubMed/NCBI
|
|
27
|
Saikia M, Jobava R, Parisien M, Putnam A,
Krokowski D, Gao XH, Guan BJ, Yuan Y, Jankowsky E, Feng Z, et al:
Angiogenin-cleaved tRNA halves interact with cytochrome c,
protecting cells from apoptosis during osmotic stress. Mol Cell
Biol. 34:2450–2463. 2014. View Article : Google Scholar : PubMed/NCBI
|
|
28
|
Chen Q, Yan M, Cao Z, Li X, Zhang Y, Shi
J, Feng GH, Peng H, Zhang X, Zhang Y, et al: Sperm tsRNAs
contribute to intergenerational inheritance of an acquired
metabolic disorder. Science. 351:397–400. 2016. View Article : Google Scholar : PubMed/NCBI
|
|
29
|
Langmead B, Trapnell C, Pop M and Salzberg
SL: Ultrafast and memory-efficient alignment of short DNA sequences
to the human genome. Genome Biol. 10:R252009. View Article : Google Scholar : PubMed/NCBI
|
|
30
|
Friedländer MR, Mackowiak SD, Li N, Chen W
and Rajewsky N: miRDeep2 accurately identifies known and hundreds
of novel microRNA genes in seven animal clades. Nucleic Acids Res.
40:37–52. 2012. View Article : Google Scholar
|
|
31
|
Robinson MD, McCarthy DJ and Smyth GK:
EdgeR: A bioconductor package for differential expression analysis
of digital gene expression data. Bioinformatics. 26:139–140. 2010.
View Article : Google Scholar : PubMed/NCBI
|
|
32
|
Livak KJ and Schmittgen TD: Analysis of
relative gene expression data using real-time quantitative PCR and
the 2(-Delta Delta C(T)) method. Methods. 25:402–408. 2001.
View Article : Google Scholar : PubMed/NCBI
|
|
33
|
Betel D, Wilson M, Gabow A, Marks DS and
Sander C: The microRNA.org resource: Targets and expression.
Nucleic Acids Res. 36:D149–D153. 2008. View Article : Google Scholar : PubMed/NCBI
|
|
34
|
Agarwal V, Bell GW, Nam JW and Bartel DP:
Predicting effective microRNA target sites in mammalian mRNAs.
Elife. 4:e050052015. View Article : Google Scholar : PubMed/NCBI
|
|
35
|
Enright AJ, John B, Gaul U, Tuschl T,
Sander C and Marks DS: MicroRNA targets in Drosophila. Genome Biol.
5:R12003. View Article : Google Scholar : PubMed/NCBI
|
|
36
|
Grimson A, Farh KK, Johnston WK,
Garrett-Engele P, Lim LP and Bartel DP: MicroRNA targeting
specificity in mammals: Determinants beyond seed pairing. Mol Cell.
27:91–105. 2007. View Article : Google Scholar : PubMed/NCBI
|
|
37
|
Friedman RC, Farh KK, Burge CB and Bartel
DP: Most mammalian mRNAs are conserved targets of microRNAs. Genome
Res. 19:92–105. 2009. View Article : Google Scholar : PubMed/NCBI
|
|
38
|
Fu Y, Lee I, Lee YS and Bao X: Small
non-coding transfer RNA-Derived RNA fragments (tRFs): Their
biogenesis, function and implication in human diseases. Genomics
Inform. 13:94–101. 2015. View Article : Google Scholar : PubMed/NCBI
|
|
39
|
Zhou K, Diebel KW, Holy J, Skildum A,
Odean E, Hicks DA, Schotl B, Abrahante JE, Spillman MA and Bemis
LT: A tRNA fragment, tRF5-Glu, regulates BCAR3 expression and
proliferation in ovarian cancer cells. Oncotarget. 8:95377–95391.
2017. View Article : Google Scholar : PubMed/NCBI
|
|
40
|
Xu H, Chen W, Zheng F, Tang D, Dai W,
Huang S, Zhang C, Zeng J, Wang G and Dai Y: The potential role of
tRNAs and small RNAs derived from tRNAs in the occurrence and
development of systemic lupus erythematosus. Biochem Biophys Res
Commun. 527:561–567. 2020. View Article : Google Scholar : PubMed/NCBI
|
|
41
|
Keith B and Simon MC: Hypoxia-inducible
factors, stem cells, and cancer. Cell. 129:465–472. 2007.
View Article : Google Scholar : PubMed/NCBI
|
|
42
|
Shao Y, Sun Q, Liu X, Wang P, Wu R and Ma
Z: tRF-Leu-CAG promotes cell proliferation and cell cycle in
non-small cell lung cancer. Chem Biol Drug Des. 90:730–738. 2017.
View Article : Google Scholar : PubMed/NCBI
|
|
43
|
Balatti V, Nigita G, Veneziano D, Drusco
A, Stein GS, Messier TL, Farina NH, Lian JB, Tomasello L, Liu CG,
et al: tsRNA signatures in cancer. Proc Natl Acad Sci USA.
114:8071–8076. 2017. View Article : Google Scholar : PubMed/NCBI
|
|
44
|
Myers DJ and Wallen JM: Lung
adenocarcinoma. National Institutes of Health 2020.
|
|
45
|
Hanahan D and Weinberg RA: The hallmarks
of cancer. Cell. 100:57–70. 2000. View Article : Google Scholar : PubMed/NCBI
|
|
46
|
Hanahan D and Weinberg RA: Hallmarks of
cancer: The next generation. Cell. 144:646–674. 2011. View Article : Google Scholar : PubMed/NCBI
|
|
47
|
Kato J, Matsushime H, Hiebert SW, Ewen ME
and Sherr CJ: Direct binding of cyclin D to the retinoblastoma gene
product (pRb) and pRb phosphorylation by the cyclin D-dependent
kinase CDK4. Genes Dev. 7:331–342. 1993. View Article : Google Scholar : PubMed/NCBI
|
|
48
|
Amiri KI and Richmond A: Fine tuning the
transcriptional regulation of the CXCL1 chemokine. Prog Nucleic
Acid Res Mol Biol. 74:1–36. 2003. View Article : Google Scholar : PubMed/NCBI
|
|
49
|
Hui CC and Angers S: Gli proteins in
development and disease. Annu Rev Cell Dev Biol. 27:513–537. 2011.
View Article : Google Scholar : PubMed/NCBI
|
|
50
|
Yamasaki S, Ivanov P, Hu GF and Anderson
P: Angiogenin cleaves tRNA and promotes stress-induced
translational repression. J Cell Biol. 185:35–42. 2009. View Article : Google Scholar : PubMed/NCBI
|
|
51
|
Martineau Y, Azar R, Bousquet C and
Pyronnet S: Anti-oncogenic potential of the eIF4E-binding proteins.
Oncogene. 32:671–677. 2013. View Article : Google Scholar : PubMed/NCBI
|
