Open Access

Compound heterozygous CAPN3 variants identified in a family with limb-girdle muscular dystrophy recessive 1

  • Authors:
    • Cheng Zhang
    • Xueping Zheng
    • Deguo Lu
    • Lulu Xu
    • Fengyuan Che
    • Shiguo Liu
  • View Affiliations

  • Published online on: April 23, 2021     https://doi.org/10.3892/mmr.2021.12119
  • Article Number: 480
  • Copyright: © Zhang et al. This is an open access article distributed under the terms of Creative Commons Attribution License.

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Abstract

Limb-girdle muscular dystrophy recessive 1 (LGMDR1), a rare subtype of muscular dystrophy, is characterized by progressive muscle weakness and degeneration with a predominant presentation on the shoulder, pelvic and proximal limb muscles. Variants in calcium-activated neutral proteinase 3 (CAPN3), which encodes an enzyme, calpain 3, are considered the major cause of LGMDR1. The present study was conducted to identify the variants responsible for clinical symptoms in a Chinese patient with limb-girdle muscular dystrophies (LGMDs) and explore its genotype-phenotype associations. A series of clinical examinations were conducted, including blood tests and magnetic resonance imaging scans of the lower legs, electromyography and muscle biopsy on the proband diagnosed with muscular dystrophies. Genomic DNA was extracted from the peripheral blood of a three-person family with LGMDs and pathogenic variants detected by whole-exome sequencing (WES) were verified by Sanger sequencing. The WES of this patient revealed compound heterozygous variants in CAPN3, c.2120A>G/p.(Asp707Gly) in exon 20 and c.2201_2202delAT/p.(Tyr734*) in exon 21, which were inherited from his parents and absent from 200 control individuals of similar ethnic origin, indicating that these variants are the pathogenic triggers of the LGMDR1 phenotype. Notably, these CAPN3 sequence variants were related to LGMDR1 pathogenesis in this three-person family. The newly discovered c.2201_2202delAT/p.(Tyr734*) expands the current CAPN3 variant spectrum, improving the understanding of the conditions required to develop molecular diagnostic tools and for genetic counseling, particularly for families with a history of autosomal recessive LGMDs.

Introduction

Calpainopathy, or limb-girdle muscular dystrophy recessive 1 [LGMDR1; Online Mendelian Inheritance in Man (OMIM):253600], previously known as limb-girdle muscular dystrophy type 2A (LGMD2A), has an incidence of 1 in 100,000 and is the commonest type of LGMD in Europe, accounting for approximately 30% of muscular dystrophies. However, LGMDs are relatively rare in China (13). The clinical manifestations of LGMDR1 are similar to those of other types of LGMDs, including progressive weakness and muscle atrophy in the shoulder, pelvic girdle muscles and proximal limb muscles. Notably, lower limb and body muscles are most affected. Some patients present with an abnormal gait or difficulty climbing stairs and lifting weights, accompanied by aggravated locomotor abilities (46). The phenotypic manifestations of LGMDR1 are highly heterogeneous and can be inconsistent even within the same family. Symptoms and physical signs may appear at any age and generally worsen over time, although they remain mild in some cases (7,8). As the pathophysiological mechanism underlying LGMDR1 is currently unknown, no effective treatment is available for this disease.

Variants in calcium-activated neutral proteinase 3 (CAPN3; OMIM:114240) can cause LGMDR1 (autosomal recessive) and limb-girdle muscular dystrophy dominant 4 (LGMDD4; LGMD1I; OMIM:618129; autosomal dominant), the clinical manifestations of which are similar except for its morbidity, inheritance patterns and severity of symptoms (9). LGMDR1 is the first disease for which the genetic cause has been conclusively attributed to defective CAPN3 via specific molecular biological effects (10). To date, more than 500 different CAPN3 variants have been reported in the Leiden muscular dystrophy database (https://databases.lovd.nl/shared/genes/CAPN3) (11). The commonest type are missense variants (~60%), which are mostly compound heterozygous variants (1214). The three different autosomal recessive subtypes associated with CAPN3 variants can be diagnosed based on the distribution of muscle weakness and age at the time of onset: Shoulder- and limb-girdle psoas muscular dystrophy (also known as Leiden-Mobius LGMD), shoulder and bone LGMD (also known as Erb LGMD) and hyper-creatine kinase-emia, which is typically observed in children or young adults (5). In most cases, the affected individuals do not present muscular symptoms but exhibit elevated serum creatine kinase (CK) levels (5,15).

CAPN3, localized on chromosome 15q15.1 (1618), spans more than 138 kb of genomic DNA with 24 exons and encodes a 94-kDa protease enzyme, calpain 3, consisting of 821 amino acids (NM_000070.2) (19). Calpain 3 protein, a calcium-dependent non-lysosomal neutral cysteine protease widely found in the sarcomere structure, serves a role in muscle regeneration, sarcolemmal repair, muscle assembly and remodeling, as well as cytoskeleton regulation and calcium homeostasis (20,21). The main structure of calpain 3 includes four functional domains, a cysteine protease (II) and penta-EF-hand (PEF) (IV) domains, that respectively code for cysteine protease and calcium-binding domains involved in calcium-dependent enzyme activation (22,23).

Due to the high clinical and genetic heterogeneity of LGMDs, it is challenging to distinguish different subtypes only on the basis of clinical symptoms and physical signs (2426). As such, a large number of patients may be misdiagnosed in the early stage. Thus, genetic testing is strongly recommended to offer a reliable and conclusive differential diagnosis.

The present study described a 23-year-old man who presented with consistently elevated serum CK as his only symptom and was initially diagnosed with polymyositis. A strategy was devised to couple next-generation sequencing (NGS) with Sanger sequencing validation to identify and validate the disease-causing variants in this proband. The results provided insight for further research on the pathogenesis of LGMDs and to accelerate prenatal diagnosis development.

Materials and methods

Subjects

The proband (II:2), a 23-year-old male born to healthy, non-consanguineous parents (Fig. 1), was admitted to the Affiliated Hospital of Qingdao University due to consistently elevated, although fluctuating, CK levels. Based on laboratory examinations, the proband was initially diagnosed with polymyositis by the Immune Department of the Affiliated Hospital of Qingdao University (Shandong, China). However, a successive series of physical examinations and auxiliary tests, including serum CK measurement, electromyography, magnetic resonance imaging (MRI) and muscle biopsy, were performed to complement and validate the presumptive diagnosis. Control samples were randomly collected from patients who presented to The Affiliated Hospital of Qingdao University since August 2020. The control group comprised 200 healthy individuals (age, 18–65 years) from the ethnic Han Chinese population in Shandong Province. The male-to-female ratio was 1:1. The proband and parents as well as individuals in the control group signed informed consent forms prior to venous blood collection. The present study was approved by the ethics committee of the Affiliated Hospital of Qingdao University (approval no. qdfy20203789) and conformed to the guidelines set forth by the Declaration of Helsinki.

Genomic DNA preparation

From a three-person family, genomic DNA (gDNA) was extracted from 200 µl of peripheral blood samples in the presence of ethylenediaminetetraacetic acid as an anticoagulant with a DNA Extraction kit (Qiagen GmbH) according to the manufacturer's instructions. The optical density value of the gDNA was determined with a Sim-100 ultramicro spectrophotometer (Thermo Fisher Scientific, Inc.). gDNA samples were prepared as Illumina sequencing libraries. Targeted sequencing was performed on the proband samples (II:2). The pathogenic variant was validated by Sanger sequencing in both proband and parental samples.

Whole-exome sequencing (WES) for variant screening

WES technology was used to screen the mutated sites in CAPN3 (NM_000070.2, NP_000061.1). WES was performed according to the human exome capture protocol from Illumina's TruSeq Exome Enrichment Guide (SureSelectXT Target Enrichment System for Illumina Paired-End Sequencing Library, Agilent Technologies, Inc.). The exome enrichment probe sets were constructed with the Agilent Human All Exon 50 Mb Exome Enrichment kit and sequenced on a HiSeq 4000 NGS platform (Illumina, Inc.). The captured gDNA library was sequenced on the Illumina HiSeq 4000 platform and 200 (2×100) bp were generated from the final library fragment using V2 Reagent 1.8 software (Illumina, Inc.; data after June 22, 2011). The average depth of the target area was 257.15 and the target bases with coverage of at least 50× were 75.81%, 20× were 82.23%, 10× were 89.04%, 4× were 93.56% and 1× were 96.09%, respectively. Following sequencing, low-quality variants were filtered out to obtain clean reads. Paired-end sequence reads were mapped to the human reference genome hg19 with Burrows-Wheeler Aligner (27). Genome Analysis Toolkit software (https://gatk.broadinstitute.org/hc/en-us) (28) was used to identify single-nucleotide polymorphisms and insertions or deletions. All identified variants were submitted to ANNOVAR (version 2020Oct07) (29) for functional annotation and genetic filtering. All information presented in the present study was directly extracted from the reference data set or calculated in batches of all variants. Common variants were excluded by comparison with >1,000 exomes sequenced in our laboratory for unrelated conditions and subsequently filtered with the dbSNP v137 (ncbi.nlm.nih.gov/snp/), 1000 Genomes Project (ncbi.nlm.nih.gov/variation/tools/1000genomes/), National Heart, Lung and Blood Institute, Exome Sequencing Project (evs.gs.washington.edu/EVS/) and ExAC databases (exac.broadinstitute.org). Variant filtration was based on the following criteria: i) Excluding untranslated region 3 and 5 variants, non-coding RNA intron variants and intron and synonymous variants; ii) excluding minor allele frequency >0.1 variants (30); and iii) ≥50% of the harmful variants in the bioinformatics software [PolyPhen-2 (genetics.bwh.harvard.edu/pph2/), SIFT (sift.jcvi.org/www/SIFT_BLink_submit.html) and Mutation Taster (mutationtaster.org/ChrPos.html)] were retained.

Sanger sequencing validation

The variations detected by WES were validated by Sanger sequencing. Healthy controls (200) from the Han Chinese ethnic population in Shandong Province were randomly selected for validation. The male-to-female ratio was 1:1. The two pairs of primers covering the variants were: Forward, 5′-ATCCTGCCCAAGCAAAAGTG-3′; reverse, 3′-GCCGGACTGGTCTGTGTCAT-5′ for c.2120A>G in exon 20 (primer pair one) and forward, 5′-GGTAGGACAGCCCGGAGTCT-3′; reverse: 5′-TTGGGCCTGCCTTCTATTTTC-3′ for c.2201_2202delAT in exon 21 (primer pair two). Identical amplification conditions for were used for both primer pairs in a total volume of 25 µl containing 250 nM dNTPs, 100 ng of template DNA, 0.5 mM of each primer and 1.25 units AmpliTaq Gold DNA polymerase in 1X reaction buffer (10 mM Tris HCl, pH 8.3, 50 mM KCl, 2.5 mM MgCl2). PCR was performed as follows: initial denaturation at 94°C for 5 min, followed by 35 cycles comprising denaturation at 94°C for 30 sec, annealing at 55°C for primer pair one and 58°C for primer pair two for 60 sec and extension at 72°C for 30 sec; after which a final extension was conducted at 72°C for 10 min. Amplified PCR products were purified and sequenced using appropriate PCR primers and a BigDye Terminator Cycle Sequencing kit (Applied Biosystems; Thermo Fisher Scientific, Inc.) and evaluated on an ABI 3730XL automated sequencer (Applied Biosystems; Thermo Fisher Scientific, Inc.) for variant analysis.

Bioinformatics analysis

Functional impacts of the variants were predicted in silico using the following software. Multiple sequence alignment was conducted to analyze gene sequence conservation. The CAPN3 amino acid sequences from multiple species were obtained from the UniProt website (http://www.uniprot.org). PolyPhen-2 (http://genetics.bwh.harvard.edu/pph2/) and SIFT (http://sift.jcvi.org/www/SIFT_BLink_submit.html) software were used to analyze and predict the function of the identified variants.

The structure of a CAPN3 orthologue (PDB code 4OKH) was used to predict the structural role of CAPN3 residues (31). Using the SWISS-MODEL program (31), comparative modeling and energy minimization methods were used to model the three-dimensional structure of CAPN3 (32). The orthologous residues were determined by alignment with the amino acid sequence of ClustalW-2. PyMOL-1 (pymol.org/2/ V 2.4.1) was used to simulate and visualize the three-dimensional protein structure of the wild-type (WT) and mutant proteins.

Results

Clinical features

The proband was a sporadic case with no related symptoms manifesting in the parents. The proband was admitted to the Affiliated Hospital of Qingdao University for consistently elevated, although fluctuating, CK levels. The clinical course was as follows: The proband was found to have elevated CK (3,000 µg/l; physiological range 38–174 µg/l) when he visited the hospital for a skin rash in 2015, without any muscle aches. Then, seven days later, the patient was admitted to the Department of Immunology of the hospital (CK: 2,185 µg/l) and was initially diagnosed as possible polymyositis; thus, he was administered hormone combined with immunosuppressive therapy. No evident therapeutic effect was observed and his CK levels widely fluctuated during treatment. Until 2020, the patient presented no abnormalities, a normal walking posture and regular squatting and stair climbing abilities and could lift heavy objects. As the elevated CK levels did not affect his everyday life, this condition remained undiagnosed and untreated. On June 1, 2020, for the first time, the patient felt weakness in the left lower limb after several hours of driving. At that time, the CK level was 2,091 µg/l; except for slightly uneven shoulder blades, no muscular abnormalities were observed. The muscle volume was normal and no evidently abnormal distribution was evidenced by muscle MRI. However, 20 days later, the CK level was 11,262 µg/l for no apparent reasons. Following hormone therapy, the CK level decreased to 1,179 µg/l. In addition to increased CK, the patient also had increased total bilirubin (61.6 µmol/l) and direct bilirubin (16.7 µmol/l). Since disease onset, the patient's weight did not significantly vary and no family member showed similar symptoms. Except for the persistently elevated CK level, the patient did not show numbness, tingling, or pain in his hands or feet and other general physical symptoms were normal, including eating, urination, defecation and cranial nerve function.

The patient showed a normal cognitive function in the neuropsychological test via the Minor Mental State Examination (33). On physical examination, the patient presented approximately average muscle strength and volume. Muscle strength was graded according to the Medical Research Council scale (34): Neck flexors 5-/5, neck extensors 5/5, bilateral shoulder abductors 5-/5, left elbow flexors/extensors 5/5, right elbow flexors/extensors 5/5, bilateral hip flexors/extensors, bilateral wrist flexors/extensors, knee flexors/extensors and ankle dorsiflexors/plantar flexors 5-/5. No extraocular, facial, or bulbar muscle weakness or significant muscle atrophies were detected.

Laboratory examination showed a regular blood routine, serum potassium, erythrocyte sedimentation rate and C-reactive protein level. Markedly, the CK had been maintained at a high-level, reaching a maximum of 11,262 µg/l, which is 50-fold higher than the physiological level and independent of symptom severity (Fig. 2). The CK-MB and lactate dehydrogenase of the patient increased to 96 and 356 µg/l, respectively, which may cause inflammatory myositis (35). Electromyography examination showed no noticeable myopathy changes, including motor unit action potentials with short duration, small amplitude and increased polyphasic potentials. Muscle MRI did not show abnormal signs of asymmetric muscle involvement. Muscle biopsy revealed a muscle tissue morphology consistent with normal muscle tissue and the results of immunohistochemical staining were normal. Genetic testing was performed after LGMD was diagnosed.

Genetic analysis

The average depth of sequencing was 257.15×; coupled with the results of Sanger sequencing verification, high sequencing reliability was obtained. WES data were filtered to exclude non-genetic variants and then compared with the dbSNP and 1000 G databases. Subsequently, two likely pathogenic compound heterozygous variants in CAPN3 (NM_000070.2) (predicted by bioinformatics analyses) were validated by Sanger sequencing in the proband, a missense variant c.2120A>G/p.(Asp707Gly) (NM_000070.2: c.2120A>G, NP_000061.1: p.(Asp707Gly)) and deletion variant c.2201_2202delAT/p.(Tyr734*) [NM_000070.2: c.2201_2202delAT, NP_000061.1: p.(Tyr734*)], inherited from his father and mother, respectively.

The missense variant c.2120A>G/p.(Asp707Gly) in exon 20 resulted in a single-nucleotide polymorphism (A-G) at site 2120 in the coding region of CAPN3 (NM_000070.2), which introduced an aspartic acid residue that replaced a glycine in codon 707 (Fig. 3A). This variant was previously reported in multiple (>10) homozygous or compound heterozygous patients with LGMDs (PM3-PVS) (36), which co-segregated within a family (PP1-PM) (37). The normal population database includes this variant; its frequency is 0.0148% (42/282854, gnomAD; PM2); bioinformatics analysis software SIFT, PolyPhen2 and Mutation Taster consistently predicted the variant to be harmful (PP3). In addition, the variant is included in ClinVar as a ‘pathogenic/suspected pathogenic variant’ (36). According to available evidence, the variant is defined as pathogenic (PM3-PVS+PM2+PP1-PM+PP3) based on the 2015 ACMG guidelines for sequence variant interpretation (38).

A novel deletion variant c.2201_2202delAT/p.(Tyr734*) occurred in exon 21 of CAPN3 (NM_000070.2), which resulted in a variant at site 734 of the encoded protein that converted a tyrosine residue into a stop codon (Fig. 3B), which may cause protein truncation or activate nonsense-mediated CAPN3 mRNA degradation, thereby affecting the function of the protein product encoded by CAPN3 (PVS1). This variant was not detected in the normal population database (PM2); in the trans-position, the pathogenic variant c.2201_2202delAT/p.(Tyr734*) was detected (PM3). According to the 2015 ACMG guidelines (38) for sequence variant interpretation, this variant is defined as pathogenic (PVS1+PM2+PM3).

The probability of these variants occurring in the population is extremely low and neither variant was not found in 200 identical ethnic healthy, unrelated controls from the Shandong population with the WT genotype. Based on the data of the present study and the characteristics of autosomal recessive inheritance, it was found that the CAPN3 compound heterozygous variants (c.2120A>G and c.2201_2202delAT) co-segregated with the LGMDR1 phenotypes in this three-person family.

Multiple sequence alignment and molecular structure modeling

Multiple sequence alignment was performed to analyze protein sequence conservation. This analysis of CAPN3 protein from six species, including sheep, pig, cow, rat, chimpanzee and monkey, showed that the aspartic acid and tyrosine residues at positions 707 and 734 of CAPN3 are highly conserved (Fig. 4).

A homologous PDB protein sequence was downloaded from the RCSB database (rcsb.org/) (PDB code 4OKH) and PyMOL-1 software was used to simulate the CAPN3 three-dimensional protein structure (Fig. 5). Fig. 5A and B shows the interaction between residue 707 (p.Asp707) with surrounding amino acids before and after the variant. The aspartic acid at position 707 and serine at 709 formed two hydrogen bonds (indicated by green dotted lines, 3.0 and 3.1 represent the hydrogen bond distance between Asp707 and surrounding residues) and glutamic acid at site 716 forms a hydrogen bond (indicated by 3.2) with aspartic acid at position 707. Due to a point variant, the glycine at position 707 fails to form hydrogen bonds with surrounding amino acid residues. Compared with the WT sequence, the acid residue on position 707 lacks interactions with serine residues, weakening the interaction between the residue at position 707 with the surrounding amino acids, affecting overall protein stability. Fig. 5C shows that the deletion due to the tyrosine 734 nonsense variant resulted in a truncated protein and functional impairment.

Discussion

The present study observed a sporadic male case of LGMDR1 and identified two compound heterozygous variants in CAPN3, namely c.2120A>G/p. (Asp707Gly) and c.2201_2202delAT/p.(Tyr734*), which co-segregated with the LGMDR1 phenotypes in the proband's family. The genetic analysis of this family showed that the parents of this proband were obligate heterozygotes, as evidenced by Sanger sequencing and carried one CAPN3 pathogenic variant each. Therefore, it was considered that this proband had an autosomal recessive inheritance (AR-LGMDR1). Each sibling of this proband had a 25% possibility of being affected at conception, a 50% possibility of being an asymptomatic carrier and a 25% possibility of being unaffected but not a carrier. In silico analysis of these CAPN3 variants revealed all deleterious results according to the ACMG guidelines for sequence variant interpretation. Additionally, the heterozygous compound variants were absent from 200 healthy, unrelated controls from the same ethnic group in the Shandong population with WT genotypes, suggesting they are pathogenic variants responsible for the LGMDR1 phenotypes.

Genetic analysis revealed a novel frameshift variant c.2201_2202delAT at the heterozygous state in exon 21 and a known missense variant (c.2120A>G) in exon 20 of CAPN3 (36). Notably, both parents were carriers of pathogenic variants, as evidenced by Sanger sequencing, without related neuromuscular weakness or atrophies and normal CK levels. Therefore, it was considered that this proband possessed autosomal recessive inheritance. The CAPN3 missense variant p.(Asp707Gly) reportedly causes autosomal recessive inheritance, leading to severe and progressive clinical features and typical and evident muscular weakness and atrophies (11,36,37,39). Missense CAPN3 variants not only affect calpain 3 enzymatic activity, but also affect binding between protein molecules, thereby affecting protein integrity (20). Notably, previous studies showed that CAPN3 variants can also cause the autosomal dominant pattern of LGMDD4 and deletion variants c.643_663del21, c.598_612del15, as well as missense variant c.1333G>A (8,40,41) can trigger similarly mild clinical features in the case of LGMDR1. Nevertheless, in the present study, the newly identified c.2201_2202delAT deletion variant contributed to the autosomal recessive LGMDR1 pattern because of genetic heterogeneity. Although this novel deletion created a truncated calpain 3 protein, the prognosis for LGMDR1 is unpredictable depending on whether the mutated site is located in a critically functional area (42).

It is well-known that missense variants in CAPN3 are the most common type and frequently occur in the cysteine protease and PEF domain of calpain 3. The PEF domain binds four Ca2+ ions per protomer through EF1, EF2, EF3 and EF5 and three Ca2+-binding EF-hands are concentrated near the protease core, which may facilitate calpain 3 homodimerization and calcium ion binding and radically alter the local charge within the dimer during Ca2+ signaling (20,32). The two CAPN3 variants identified in the present study are respectively located in EF2 and EF3 of the PEF domain and may significantly change the 3D structure and disrupt the conformational stability of domain IV, thereby affecting the transmission of calcium signals.

Hyper-creatine kinase-emia refers to a clinically asymptomatic condition in which high serum CK levels are accidentally found during physical examination. CK levels may fluctuate, typically 5–80-fold above physiological levels. Among the reported cases, the serum CK level is elevated in almost all patients with hyper-creatine kinase-emia, showing values more than 10-fold higher than the normal level but has no apparent relationship with disease severity (4,43). Fanin et al (44) found that 6 of 58 patients with CAPN3 variants presented with hyper-creatine kinase-emia and were asymptomatic, whereas only one was heterozygous for the c.550delA variant. A cohort study showed a frequency of 1.9% in German patients with LGMD who carried the deletion variant c.550delA in CAPN3, exhibiting sustained and isolated hyper-creatine kinase-emia (45). Notably, the calpainopathy-related hyper-creatine kinase-emia in the present study was diagnosed at the age of 18 years based on elevated CK levels but without myopathic symptoms. However, genetic analysis revealed CAPN3 variants. Notably, few patients with hyper-creatine kinase-emia are asymptomatic or present only mild muscle weakness, indicating that very mild, late-onset calpainopathy phenotypes occurred in the proband in the present study.

Notably, some patients with normal CK levels present myopathy-related symptoms. Furthermore, the clinical phenotype of LGMDR1 is highly heterogeneous. The clinical phenotypes may completely differ, even between siblings with the same variant. In addition, the lack of a definitive correlation between gene variant sites and variant types (23,46,47) further hinders accurate diagnoses. Thus, the severity and prognosis cannot be predicted based on the variant type and location alone (46). Severe cases may suffer disabilities during adolescence, which seriously affects motor abilities and eventually leads to the patient requiring a wheelchair; mild cases only present with mild myasthenia, hyper-creatine kinase-emia, or pseudometabolic myopathy in adulthood (42). Simple hyper-creatine kinase-emia may be either a mild form of LGMDR1 or the preclinical stage of LGMDR1. The patient can be asymptomatic for many years but progressive weakness symptoms can appear over time. The high clinical heterogeneity of this disease is remarkable. Therefore, clinically asymptomatic hyper-creatine kinase-emia should be carefully investigated.

By performing muscular biopsies, Fanin et al (13) found that the pathological score of muscle tissue and degrees of fiber regeneration and degeneration in patients with LGMDR1 may be related to disease development. However, in the present case study, the male proband presented normal results. However, the pathogenesis of muscle changes caused by CAPN3 variants requires further investigation.

In summary, the present study determined the genetic etiology of LGMDR1 in a family with CAPN3 variants and performed genetic counseling for the proband, suggesting a genetic explanation for the simple hyper-creatine kinase-emia. The present study expanded the current clinical and genetic spectrum of LGMDR1, providing useful insights for further research on the pathogenesis of LGMDs and accelerating the development of prenatal diagnosis.

Acknowledgments

Not applicable.

Funding

The present study was supported by grants from the National Natural Science Foundation (NSFC; grant no. 81371499) and National Key Research and Development Program of China (grant nos. 2016YFC1000306 and 2005DKA32408).

Availability of data and materials

The datasets used and/or analyzed during the current study have been submitted to the ClinVar database [accession numbers VCV000468648.8 (https://www.ncbi.nlm.nih.gov/clinvar/variation/468648/) and VCV000992898.1 (https://www.ncbi.nlm.nih.gov/clinvar/variation/992898/)].

Authors' contributions

CZ and LX were responsible for data curation; CZ and XZ performed formal analysis; SL and FC were responsible for funding acquisition; DL and LX performed clinical investigation. SL and FC were responsible for project administration; CZ, LX, XZ, DL, SL and FC acquired materials; SL and FC supervised the present study. CZ and LX confirm the authenticity of all the raw data. CZ wrote the original draft; and CZ, SL and FC wrote, reviewed and edited the manuscript. All authors read and approved the final manuscript.

Ethics approval and consent to participate

The present study was approved by the ethics committee of the Affiliated Hospital of Qingdao University (approval no. qdfy20203789) and was conducted according to the Declaration of Helsinki.

Patient consent for publication

Not applicable.

Competing interests

The authors declare that they have no competing interests.

Glossary

Abbreviations

Abbreviations:

CAPN3

calcium-activated neutral proteinase 3

CK

creatine kinase

LGMD

limb-girdle muscular dystrophies

LGMD2A

limb-girdle muscular dystrophy type 2A

LGMDR1

limb-girdle muscular dystrophy recessive 1

PEF

penta-EF-hand

WT

wild-type

MRI

magnetic resonance imaging

NGS

next-generation sequencing

WES

whole-exome sequencing

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Spandidos Publications style
Zhang C, Zheng X, Lu D, Xu L, Che F and Liu S: Compound heterozygous <em>CAPN3</em> variants identified in a family with limb-girdle muscular dystrophy recessive 1. Mol Med Rep 23: 480, 2021
APA
Zhang, C., Zheng, X., Lu, D., Xu, L., Che, F., & Liu, S. (2021). Compound heterozygous <em>CAPN3</em> variants identified in a family with limb-girdle muscular dystrophy recessive 1. Molecular Medicine Reports, 23, 480. https://doi.org/10.3892/mmr.2021.12119
MLA
Zhang, C., Zheng, X., Lu, D., Xu, L., Che, F., Liu, S."Compound heterozygous <em>CAPN3</em> variants identified in a family with limb-girdle muscular dystrophy recessive 1". Molecular Medicine Reports 23.6 (2021): 480.
Chicago
Zhang, C., Zheng, X., Lu, D., Xu, L., Che, F., Liu, S."Compound heterozygous <em>CAPN3</em> variants identified in a family with limb-girdle muscular dystrophy recessive 1". Molecular Medicine Reports 23, no. 6 (2021): 480. https://doi.org/10.3892/mmr.2021.12119