Serum metabolomic profile in genetically modified cows carrying human α‑lactalbumin gene
- Qin Wang
- Wei Fu
- Xiaofei Liu
- Jianwu Wang
- Chunyan Feng
- Songyin Qiu
- Xiaolin Li
- Dandan Liu
- Shuifang Zhu
- Xiangmei Lin
- Published online on: October 11, 2017 https://doi.org/10.3892/mmr.2017.7768
Copyright: © Wang et al. This is an open access article distributed under the terms of Creative Commons Attribution License.
Lactalbumin α has important nutritional and physiological value: i) It contains numerous essential amino acids, especially tryptophan, and benefits cognitive function and muscle protein synthesis; ii) it interacts with β-1,4-galactosyltransferase to promote lactose synthesis, and thereby facilitates milk production and secretion (1); iii) it binds divalent cations like Ca and Zn and facilitates mineral absorption (1); iv) it exerts strong gastroprotective activity via stimulating mucus metabolism and increasing thickness of the mucus gel layer; v) its digested peptides have immunostimulatory and antibacterial properties, and thus possibly protect against infection (1) and iv) its folding variants can induce tumor apoptosis and remedy cutaneous warts.
In contrast with its abundancy in human milk (25–35% of total protein) (2), lactalbumin α only accounts for 2–5% of the total protein in cow milk (1). In addition, endogenous cow lactalbumin α is one of the major allergens for humans. In order to increase the concentration of human lactalbumin α in cow milk, genetically modified cows expressing human lactalbumin α have been developed with the highest content up to 1.55 mg/ml in milk (3). Subsequently, previous studies have investigated the effect overexpression or transgenesis of human lactalbumin α on the protein expression profile and milk composition in cows, as well as the environmental risks. Reportedly, overexpression of human lactalbumin α in cows does not affect milk composition (4). It has been determined that 166 proteins in the milk fat globule membrane (MFGM) were specifically expressed only in cows overexpressing human lactalbumin α and this was different from the cloned non-transgenic cows and conventionally bred normal cows (5). A previous study performed a functional analysis that revealed that the up and downregulated proteins in MFGM of cows overexpressing human lactalbumin α were not associated with a specific biological pathway or function and that human lactalbumin α overexpression had no deleterious effects on the cattle mammary gland (5). Additionally, the transgene of human lactalbumin α (LALBA) cannot be detected in gut microbial DNA and thus has no influence on microbial communities in cow gut or soil. However, the effect of transgenic modification on the metabolomic profile in cow serum remains to be elucidated. As somatic cell nuclear transfer was performed during the genetic modification in a previous study (3), LALBA was expressed in all the somatic cells of the transgenic cows, including blood cells. The presence of non-inherent LALBA may abnormally regulate gene expression via endogenous microRNAs or transcription factors and thus change the metabolomic profile of cow serum. This is the hypothesis and rationale behind the present study.
Metabolomics has been successfully used to investigate genetically modified organisms like transgenic rat models of various diseases and genetically engineered goats that produce human lysozyme (hLZ) in their milk (6). It is of note that when the serum metabolomics of hLZ goats (lactating does) and controls were compared, one metabolite was significantly different (6). The present study characterized and compared serum metabolomic profiles in cows carrying and expressing human LALBA (LALBA cows) and non-LALBA cows. The findings of the present study may indirectly reflect the health condition of the LALBA cows and provide complement evidence for the future use of genetic modification in cows. The humanization of bovine milk requires additional investigation of multiple transgenesis in future studies, and the findings of the present study may also contribute to the humanization of bovine milk.
Materials and methods
Transgenic cloning of Chinese Holstein cow
The protocol of the present study was approved by the Institutional Animal Care and Use Committee of the Chinese Academy of Inspection and Quarantine (Beijing, China). The transgenic cloned Chinese Holstein cow (F0 generation, female) was provided by the China Agricultural University (Beijing, China), which expressed and characterized the bioactive recombinant human lactalbumin α in cow milk (3). It is of note that only human lactalbumin α was genetically overexpressed in the cow referenced in Wang et al (3); however, human LALBA was expressed in all the somatic cells of this cow. Both the LALBA and non-LALBA cows used in the present study were the offspring of the Wang et al transgenic cow.
LALBA and non-LALBA cows
The primary generation of transgenic cloned cows was defined as the F0 generation (1 female). Following superovulation, the ovum of F0 generation (female) was inseminated with the sperm from one healthy male cattle. Embryos were transferred to ten recipient cows, and a healthy F1 generation (male) was selected, which expressed LALBA. The sperm from the F1 generation (male) was used to artificially inseminate with the ova in 20 normal cows during their child-bearing periods, which were similar in genetic background, age and feeding conditions. In this way, LALBA and non-LALBA cows (F2 generation, female) were generated, which were identified by using polymerase chain reaction (PCR). The processes of superovulation, embryo transfer, and artificial insemination were performed as previously described (7).
To eliminate genetic background noise and reduce the influence of embryo transfer and cloning process, only half-sibs (F2 generation, female) with the same father (F1 generation, male) were used in the present study. All cows in the present study were similar in genetic background, sex (female) and age (~22 months), and were housed under same conditions (temperature of 14°C and 60% relative humidity) and had the same diet. Additionally, all the cows used were not lactating and none of them were pregnant.
DNA extraction and PCR
PCR was performed to identify the LALBA and non-LALBA cows. Total DNA was extracted from 5 ml cow blood samples (namely, pellets following centrifugation at 3,500 × g for 30 min at 4°C) by using GenElute Blood Genomic DNA kit (Sigma-Aldrich, Merck Millipore, Darmstadt, Germany). The 25 µl PCR system consisted of 12.5 µl 2X Mix solution including buffer, dNTPs and rTaq polymerase (Takara Biotechnology Co., Ltd., Dalian, China), 1 µl forward primer (AGAGAGCACAGTGTTTGG; Invitrogen; Thermo Fisher Scientific, Inc., Waltham, MA, USA) and 1 µl reverse primer (GTCCAGCAGGTAAGTAAGG; Invitrogen; Thermo Fisher Scientific, Inc.), 1 µl DNA sample, and 9.5 µl ddH2O. The PCR conditions were 95°C for 10 min then 30 cycles (95°C, 30 sec; 60°C, 30 sec; 72°C, 30 sec) and extension at 72°C for 30 min. Furthermore, PCR products were electrophoresed on a 1.5% agarose gel (Takara Biotechnology Co., Ltd.).
RNA extraction, reverse transcription (RT)-PCR and sequencing
RT-PCR and sequencing were performed to validate the transcription of LALBA in LALBA cows. Total RNA was extracted from cow blood samples by using Blood RNA mini kit (Qiagen, Hilden, Germany), and reverse transcription was performed using a cDNA synthesis kit (Tiangen Biotech Co., Ltd., Beijing, China). Then, PCR was conducted and cDNA was amplified using Taq PCR Mater Mix kit (Qiagen), forward primer (5′-GGTTCAGTGGTAGACAATCG-3′; Invitrogen; Thermo Fisher Scientific, Inc.), and reverse primer (5′-GGTAAGGAGAAGGAGGATGG-3′; Invitrogen; Thermo Fisher Scientific, Inc.). The conditions of PCR and electrophoresis were as aforementioned and the corresponding products were sequenced. Following alignment, the sequences of these products were consistent with that of LALBA, confirming the transcription of LALBA in LALBA cows.
Blood samples (5 ml) were obtained from the jugular vein of 6 LALBA cows (LALBA group) and 6 non-LALBA cows (non-LALBA group) at 10:00 am after the animals were fasted for 10 h. After storing the blood at 4°C for 12 h, blood samples were centrifuged at 3,500 × g for 30 min at 4°C. The supernatant was used as serum samples, which were maintained at −80°C until processing.
Serum biochemistry indexes
In order to detect the effect of LALBA on the blood chemistry of cows, serum biochemistry indexes were quantified, including potassium, sodium, chlorine, calcium, phosphorus, glucose, cholesterol, albumin, total bilirubin, creatine phosphokinase, glutamyl transpeptidase, blood urea nitrogen, alanine aminotransferase and creatinine. These indexes were detected according to the protocols recommended by the International Federation of Clinical Chemistry (IFCC) (8).
Sample preparation, metabolite extraction and metabolite detection were performed by the SJTU-Metabolon Joint Metabolomics Laboratory (Metabolon Inc., Durham, NC, USA; project no. SJTUX-02-14VW) based on a global unbiased platform. The metabolite detection, data processing, metabolite quantitation and corresponding instrumentation have been were performed as previously described (9). Briefly, the samples were prepared by using Hamilton MicroLab STAR system and the resulting extract was divided and prepared by using TurboVap (Zymark, Palo Alto, CA, USA) and vacuum drying machine for the following instrument: i) Ultra-Performance Liquid Chromatography-Tandem Mass Spectrometry (UPLC-MS/MS) with positive ion mode electrospray ionization (Waters Acquity UPLC and Thermo-Finnigan LTQ mass spectrometer; scan range, 80–1000 m/z); ii) UPLC-MS/MS with negative ion mode electrospray ionization; iii) Liquid Chromatography (LC) polar platform; iv) Gas Chromatography-Mass Spectroscopy (GC-MS, Thermo-Finnigan Trace DSQ fast-scanning single-quadrupole mass spectrometer; scan range, 50–750 m/z). Data were extracted using Metabolon's hardware and software (10) constructed via Microsoft's NET technologies and compounds were identified based on Metabolon library recording m/z, retention time/index, and chromatographic data of more than 3,300 molecules.
Principal component analysis (PCA)
As an unsupervised clustering approach, PCA reduces the dimension of data based on orthogonal transformation, generating principle components (11). In the present study, SIMCA-P version 12.0 (Umetrics AB, Umea, Sweden) was used to perform the PCA.
Hierarchical clustering analysis
As an unsupervised method for clustering data, hierarchical clustering may reveal the large-scale differences between groups based on Euclidean distance. Hierarchical clustering analysis was conducted by using pheatmap package in R (version 0.7.7; R Core Team, Vienna, Austria) (12).
Altered metabolite screening
In order to generate metabolite levels, peaks were quantified using area-under-the-curve. The metabolite levels were log10 transformed, while missing values were imputed by using the minimum observed value for each compound. The Welch's two-sample t-test (13) was used to identify significantly altered metabolites, namely, the metabolites that significantly differed between LALBA and non-LALBA groups. The threshold criteria used for this analysis were P<0.05 and fold-change ≠ 1.
Random forest analysis
As a supervised classification approach based on decision trees (14), random forest analysis is a valuable statistical tool for compound classification (15). Random forest has several advantages: i) It makes no parametric assumptions; ii) variable selection is not required; iii) it does not overfit; iv) it is invariant to transformation and v) it is fairly easy to implement in R. The present study used the randomForest package (16) to perform random forest analysis. To identify the metabolites making a large contribution to classification, parameter ‘variable importance’ was computed, and random forest analysis provides an ‘importance’ rank ordering of metabolite based on mean decrease accuracy.
The significantly altered metabolites were mapped onto general biological pathways using the Pathview software package (version 1.8.0; bioconductor.org/packages/release/bioc/html/pathview.html) (17) in R, generating the potential pathways affected by LALBA transgenesis.
LALBA and non-LALBA cows
PCR and RT-PCR products of LALBA and non-LALBA cows. (A) PCR products. 1, positive control; 2, negative control; 3, blank control; 4, DL2000 marker; 5, 7, 9, 11, 13, 15, samples from LALBA cows; 6, 8, 10, 12, 14, 16, samples from non-LALBA cows. (B) RT-PCR products. 1, DL2000 marker; 2, 3, 4, 5, 6, 7, samples from LALBA cows; 8, blank control; 9, DL2000 marker. LALBA, human lactalbumin α; PCR, polymerase chain reaction; RT, reverse transcription.
Serum biochemistry indexes
Although differences of some serum biochemistry indexes occurred between LALBA and non-LALBA cows, all of the serum biochemistry indexes of LALBA and non-LALBA cows were within the previously established normal range (18) for healthy cows (Table I).
PCA and hierarchical clustering analysis based on detected metabolites
Based on UPLC-MS/MS, LC and GC-MS platforms, a total of 273 compounds with known identity (metabolites) were detected in cow the extracted serum. PCA (Fig. 2A) and hierarchical clustering analysis (Fig. 2B) revealed a distinct separation between LALBA and non-LALBA groups. In PCA, the 12 samples could be clearly classified into 2 groups (LALBA and non-LALBA), and 5 samples from the two groups were closely related (Fig. 2A), which may be due to the small sample size of each group.
Distinct separation between LALBA and non-LALBA groups. (A) Principal component analysis and (B) hierarchical clustering analysis. LALBA, human lactalbumin α.
Significantly altered metabolites in serum of LALBA cows
Among the 273 detected metabolites, 79 metabolites were found to differ significantly between the LALBA and non-LALBA groups based on Welch's two-sample t-test (Table II; fold change ≠ 1 and P<0.05), particularly erythritol, 4-hydroxyphenylacetyl glycine, arginine, N-acetylglycine, α-hydroxyisocaproate, leucyltryptophan, myristoleate (14:1n5), β-hydroxyisovalerate, phenyllactate and glycerol (Fig. 3). Additionally, 46 metabolites were significantly increased, whereas 33 metabolites were significantly reduced in the LALBA group, when compared with the non-LALBA group.
Box plots for the top 10 significantly altered metabolites, including (A) erythritol, (B) 4-hydroxyphenylacetyl glycine, (C) arginine, (D) N-acetylglycine, (E) α-hydroxyisocaproate, (F) leucyltryptophan, (G) myristoleate (14:1n5), (H) β-hydroxyisovalerate (I) phenyllactate and (J) glycerol.
Random forest analysis
Random forest analysis identified a unique metabolic signature between LALBA and non-LALBA groups with a predictive accuracy of 100% (Fig. 4). Therefore, these 30 metabolites (14 elevated and 16 reduced) were defined as the potential key metabolites (Table II).
Random forest analysis identified a unique metabolomic signature between the LALBA and non-LALBA group. LALBA, human lactalbumin α. Metabolites are rank-ordered by their mean decrease accuracy score. A higher mean decrease accuracy value indicates a greater predictive value.
The significantly altered metabolites and the potential key metabolites were determined to be primarily involved in the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, including leucine, isoleucine and valine, tryptophanand and lipid metabolism (Fig. 5). Leucine, isoleucine, and valine, also termed branched chain amino acids (BCAA) were increased in LALBA serum compared with non-LALBA controls, whereas their downstream catabolites were reduced, including isobutyrylcarnitine and 2-methylbutyrylcarnitine (Fig. 5A). In the LALBA serum, tryptophan accumulation was accompanied by reduced levels of indolepropionate and C-glycosyltryptophan; however, elevated levels 3-indoxyl sulfate was also identified (Fig. 5B). In addition, long chain fatty acids including palmitoleate (16:1n7), myristoleate (14:1n5) and myristate (14:0) were reduced in LALBA serum when compared with non-LALBA controls. Polyunsaturated fatty acids (PUFAs) including eicosapentaenoate (EPA; 20:5n3), docosapentaenoate (n3 DPA; 22:5n3) and mead acid (20:3n9) were elevated in LALBA serum (Fig. 5C).
Primary pathways involving significantly altered metabolites. (A) Branched chain amino acids (B) tryptophan and (C) lipid metabolism. Red, increased metabolite; Green, decreased metabolite; Bold, potential key metabolite.
Quantifying the metabolomic profile in serum of cows carrying and expressing LALBA may provide an insight into the health condition of transgenic LALBA cows and provide complement evidence for the usage of genetic modification in cows. The present study was conducted to identify the serum metabolic perturbations associated with the presence of human LALBA in cows. A total of 79 metabolites were identified to differ significantly between LALBA and non-LALBA groups, 30 of which were defined as potential key metabolites. These metabolites were determined to primarily participate in the metabolism of amino acids and lipids.
In the present study, valine, isoleucine, leucine and tryptophan were found to be significantly increased in the serum of LALBA cows. Reportedly, BCAA including valine, isoleucine and leucine participate in muscle growth (19) and are associated with physical functions and body composition (20). The supplementation of BCAA or leucine enhances the resistance to fatigue and promotes muscle- and liver-glycogen spares in trained rats (21). Therefore, the accumulation of BCAA may benefit muscle growth and physical functions in LALBA cows.
Additionally, tryptophan is the precursor of the neurotransmitter serotonin. Serotonin receptors, including HTR1B, HTR2A and HTR2B are expressed in small mammary blood vessels of bovids and serotonin may regulate lactational homeostasis and involution in mammary cells, along with milk yield and composition in dairy cows (22). Tryptophan supplementation may increase plasma tryptophan in heifers and dairy cows, plasma melatonin in heifers and milk yield during morning milking in dairy cows (23). Subcutaneous melatonin treatment during the early dry-off period may improve reproductive performance postpartum in dairy cows, reducing repeat breeding syndrome, the number of days open and pregnancy loss (24). Therefore, an increase in tryptophan level may benefit milk yield and reproductive performance in LALBA cows.
The present study determined that long chain fatty acids were reduced in LALBA serum, including myristate (14:0), myristoleate (14:1n5) and palmitoleate (16:1n7). The upregulation of either fatty acid synthesis or lipolysis is a critical feature of tumor metabolism. Saturated fatty acids, such as palmitic acid have pro-inflammatory effects (25,26). The addition of myristic acid, a 14-carbon saturated fatty acid, may enhance the growth of hepatocellular carcinoma cells in ACOT8-knockdown cell lines Huh7 and Hep3B with poor growth (27). Therefore, the decrease of long chain fatty acids, especially myristate, may benefit LALBA cows via its anti-cancer effect.
PUFAs including EPA, n3 DPA and mead acid were significantly elevated in LALBA serum, especially EPA, which was a potential key metabolite based on the random forest analysis performed in the present study. EPA may improve health via its anti-cardiovascular diseases, anti-cancer, anti-depression, anti-aging, anti-arthritis, anti-hypertensive, anti-inflammatory, anti-oxidant and insulin-sensitizing effects. It is of note that EPA inhibits the formation of pro-inflammatory prostaglandin E2 from arachidonic acid via competitively binding with cyclooxygenase-1 and cyclooxygenase-2, promoting the production of less-inflammatory prostaglandin E3 (28). Furthermore, EPA induces breast cancer cell apoptosis and inhibits the in vitro growth of breast cancer cells (MDA-MB-231) by 20–25% at concentrations as low as 25 µM and these effects are mediated by the activation of neutral sphingomyelinase, enhancing ceramide formation, membrane bleb formation and p21 expression. Therefore, an increase in EPA may also benefit LALBA cows.
One of the limitations of the present study was that based on previous studies on metabolite comparison between groups, only P<0.05 and fold change ≠ 1 were selected as the criteria for the screening of the significantly altered metabolites. However, future studies should perform a correction of P-value to false discovery rate (FDR) and FDR<0.05 may lead to more accurate results.
In conclusion, the serum biochemistry indexes of LALBA cows obtained in the present study were in the normal range, indicating that serum biochemistry characteristics of the cows were not significantly influenced by LALBA. This is consistent with previous studies regarding cloned cattle and their offspring (4,5). In addition, although the serum in LALBA cows possessed a unique metabolomic signature compared with their non-LALBA counterparts, the accumulation of PUFAs and amino acids, and the decline of long chain saturated fatty acids in LALBA serum may benefit LALBA cows. Therefore, further investigations should focus on validating these benefits and the corresponding mechanisms.
The present study was funded by the National Science and Technology Major Project (grant no. 2014ZX0801203B). State Key Laboratories for AgroBiotechnology China Agricultural University aided in the sample collection for the present study.
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