
Cancer therapeutic trispecific antibodies recruiting both T and natural killer cells to cancer cells
- Authors:
- Published online on: October 20, 2023 https://doi.org/10.3892/or.2023.8649
- Article Number: 212
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Copyright: © Kimura et al. This is an open access article distributed under the terms of Creative Commons Attribution License [CC BY_NC 4.0].
Abstract
Introduction
Conventional monoclonal antibodies, mostly IgG1s, have been widely used as therapies for diseases that are difficult to treat (1,2); however, they have not been effective for cancer treatment. Several strategies for improving the function of therapeutic antibodies have been explored, such as designing non-natural antibody formats, including fusion antibodies, multivalent antibodies and multispecific antibodies, as well as their combinations (3,4). Bispecific antibodies (bsAbs) among multispecific antibodies are a practical non-natural antibody format and have been approved by the United States Food and Drug Administration (5). However, only four cancer therapeutic bsAbs have been approved by the Food and Drug Administration; thus, technologies are needed to accelerate the development of highly functional non-natural antibodies for treating cancer.
Multispecific antibodies were recently developed for treating viral infections and cancer (6). For example, a trispecific antibody targeting different epitopes on the envelope of human immunodeficiency virus-1 showed antigen-binding ability and reduced the effects of viral mutations that typically make therapy challenging (7). Studies on cancer therapeutic multispecific antibodies have recently increased (8). For example, a previous study revealed that trispecific antibodies targeting different targets in cancer cells inhibit cancer growth (9). Multispecific antibodies designed to redirect some types of immune cells as effector cells toward cancer cells have been widely studied especially for developing bsAbs. As effector cells, T cells and NK cells are often used to construct multispecific antibodies (10,11), due to their high abundance in the blood and strong antitumor effects.
In previous studies by the authors, the development and efficacy of bsAbs that recruit T cells or NK cells: Ex3 targeting epidermal growth factor receptor (EGFR) on tumor cells and CD3 on T cells (12,13) and Ex16 targeting EGFR and CD16 on NK cells, were reported (14,15). T cells and NK cells also exist in solid tumors as tumor-infiltrating lymphocytes (TILs); however, a major challenge in cancer therapy is exhaustion of these effector cells (16). To activate such exhausted immune cells, co-stimulatory molecules or agonist antibodies with co-stimulatory signals have been mounted on bsAbs that recruit immune cells to design multispecific antibodies with strong therapeutic effects (17,18). Another concern is the differences in the abundance ratios of T cells and NK cells as TILs, depending on the individual cancer, stage and malignancy (19). Combination therapy with bsAbs that recruit T cells and NK cells may induce therapeutic effects independent of the TIL populations; however, administration of two biologicals is cost-ineffective due to the high production costs of conventional therapeutic antibodies. Therefore, the present study focused on the development of novel trispecific antibodies recruiting both T and NK cells.
In the present study, three Fc-fused trispecific antibodies were designed, namely T-cell and NK-cell engagers (TaKEs), which target EGFR, CD3 and CD16. Among them, TaKE1-Fc was circularly connected with four variable fragments (Fvs) from three different antibody clones. Using highly purified TaKE1 after removing the Fc region, its trispecificity via its ability to bind cancer cells, T cells and NK cells, as well as its comparable or stronger effects than those of the combination of the two bsAbs were confirmed. Functional trispecific antibodies recruiting both T cells and NK cells were created and a novel format for the development of trispecific antibodies was provided.
Materials and methods
Construction of expression vectors and preparation of three types of TaKE-Fc
It has been previously reported that bsAbs use the variable heavy (VH) and variable light (VL) regions of the humanized anti-CD3 antibody OKT3 (12), humanized anti-EGFR antibody 528 (12), mouse anti-CD16 antibody 3G8 (14) and mouse anti-EGFR antibody 225 (20). In the present study, three trispecific antibodies (TaKEs) were designed (Fig. 1). Corresponding gene expression cassettes were designed based on the amino acid sequences of the VH and VL regions and human IgG1 Fc, synthesized, and then inserted into the pCAGGS expression vector (21). All constructed gene sequences for TaKE-Fcs are indicated in Fig. S1, Fig. S2, Fig. S3. All TaKE-Fcs were expressed transiently using Expi293 Expression System (Thermo Fisher Scientific, Inc.) and purified using protein A chromatography (rProtein A Sepharose™ Fast Flow; Cytiva) according to the manufacturer's protocol. Briefly, the column was equilibrated with Tris-HCl buffer containing 200 mM NaCl (pH 8.0). After the culture supernatant was loaded onto the column, the column was washed with Tris-HCl buffer containing 200 mM NaCl (pH 8.0). TaKE-Fcs were eluted using Pierce IgG Elution Buffer (Thermo Fisher Scientific, Inc.).
Preparation of TaKE1 and bsAbs
To prepare each TaKE1 without Fc, protein A chromatography-purified TaKE1-Fc was digested with HRV3C protease fused to glutathione S-transferase (PreScission protease; Cytiva), according to the manufacturer's protocol and a previous study by the authors (22). The protease was removed on a Glutathione Sepharose 4 B column (Cytiva), and the flow-through was loaded onto the protein A column again to remove the digested Fc and undigested Fc fusion protein. Gel filtration was performed using a Superdex 200 Increase column (10/300; Cytiva) to fractionate the TaKE1 monomers. Purity and successful preparation were confirmed using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE; SuperSep™ Ace 10–20%, 17 well; FUJIFILM Wako Pure Chemical Corporation) under reducing conditions. Ex3-scDb-LH, a bispecific single-chain diabody targeting EGFR and CD3 (22), was prepared from its Fc fusion format in a similar manner. Ex16-scDb-HL, a bispecific single-chain diabody targeting EGFR and CD16, was prepared using the B. choshinensis expression system (ProteinExpress Co., Ltd.), as previously reported (15). After purification of Ex16-scDb-HL using immobilized metal affinity chromatography directly from the bacterial supernatant, gel filtration was performed using a Superdex 200 Increase column to fractionate the monomer.
Cell lines
Human bile duct carcinoma (TFK-1) was established by the authors (23). CD3-positive lymphokine-activated killer cells with the T-cell phenotype (T-LAK) cells were induced from ethically collected peripheral blood mononuclear cells (CTL-UP1; Cellular Technology Limited) as previously described (24). These cell lines were cultured in a humidified environment (37°C, 5% CO2) in RPMI-1640 medium (Sigma-Aldrich; Merck KGaA) supplemented with 10% fetal bovine serum (Biowest), 100 U/ml penicillin, and 100 µg/ml streptomycin. The NK92/CD16A cell line was kindly provided by Professor Tachibana of Osaka Metropolitan University (Osaka, Japan) and cultured in a humidified environment (37°C, 5% CO2) in MyeloCult H5100 medium (StemCell Technologies, Inc.) supplemented with 100 U/ml of recombinant human interleukin-2 (IMUNACE 35 for Injection; Shionogi & Co., Ltd.) (25).
Flow cytometric analysis
For binding analysis of TaKE1, TFK-1 cells, T-LAK cells and NK92/CD16A cells were used as EGFR-positive, CD3-positive, and CD16-positive cell lines, respectively. Each cell line was incubated with TaKE1 (40 pmol) for 30 min on ice. After being washed with PBS, rabbit anti-Ex3 serum, provided by Immuno-Biological Laboratories Co., Ltd. through polyclonal antibody contract manufacturing service, was added and incubated for 30 min on ice, followed by staining with fluorescein isothiocyanate-labeled anti-rabbit IgG antibody (cat. no. ab6717; Abcam) for 30 min on ice. The fluorescence intensities of TaKE1 for each cell type were measured as binding properties using an Accuri C6 flow cytometer and analyzed using BD Accuri™ C6 Software (version 1.0.264.21; both from BD Biosciences).
In vitro growth inhibition assay
The in vitro growth inhibition of cancer cells was examined using an MTS assay kit (CellTiter 96® AQueous Non-Radioactive Cell Proliferation Assay; Promega Corporation), as previously reported (24). In brief, TFK-1 cells [5,000 cells in 100 µl of RPMI-1640 medium (Sigma-Aldrich: Merck KGaA) supplemented with 10% fetal bovine serum (Biowest), 100 U/ml penicillin, and 100 µg/ml streptomycin] were plated on 96-well, half-area (A/2), flat-bottomed plates (Corning, Inc.). Cells were cultured at 37°C overnight to allow well adhesion. After removal of the culture medium by aspiration, 100 µl of effector cells plus various concentrations of recombinant antibodies were added to each well. After culture of the cells for 16 h at 37°C, each well was washed with PBS three times to remove effector cells and dead target cells, and 90 µl of culture medium plus 10 µl of MTS reagent was added to each well. The plates were incubated for 1 h at 37°C and then read on a microplate reader at a wavelength of 490 nm. Growth inhibition of target cells was calculated as follows: Percentage growth inhibition of target cells=[1-(A490 of experiment-A490 of background)/(A490 of control-A490 of background)] ×100.
Statistical analysis
Data are presented as the mean ± standard deviation are representative of at least two independent experiments. All statistical analyses were performed with EZR (version 1.61; Saitama Medical Center, Jichi Medical University), which is a graphical user interface for R (version 4.2.2; The R Foundation for Statistical Computing). More precisely, it is a modified version of R commander designed to add statistical functions frequently used in biostatistics (26). The significance of the results was analyzed by one-way ANOVA and followed by Tukey's post hoc test. P<0.05 was considered to indicate a statistically significant difference.
Results
Design of three types of TaKEs
A total of three types of TaKEs were designed with specificity to cancer cells, T cells and NK cells: i) TaKE1, ii) TaKE2 and iii) TaKE3 (Fig. 1A). All TaKEs contained two Fvs against cancer and one Fv for each effector cell. A previous study revealed that higher affinities against cancer cells than those against effector cells are important for reducing severe adverse effects caused by excessive activation of effector cells (27). A tetrabody-like configuration, formed from a circularly tetramerized single-chain Fv (scFv) (28), was predicted for TaKE1 and TaKE2, as short five amino acid linkers were used as middle linkers of each chimeric single-chain component (Fig. 1B). By contrast, a tandem scFv-based configuration was predicted for TaKE3, as short five amino acid linkers were used to connect each scFv to prevent interactions between different scFvs (Fig. 1B). Two anti-EGFR antibody clones, 528 and 225, competitively target similar epitope regions (29) and show similar binding constants (30,31). To reduce unfavorable interactions between noncognate Fv clones through domain swapping, combinations of 528 and 225 Fv were integrated into TaKE2 and TaKE3. To simplify the purification procedure using protein A chromatography, all TaKEs were prepared in a human IgG1 Fc fusion format. Additionally, the HRV3C protease recognition site (LEVLFQGP) was inserted before the hinge region to produce TaKEs without Fc.
Preparation and evaluation of TaKE-Fcs
To identify functional trispecific antibodies, a cancer growth inhibition assay using protein A-purified TaKE-Fcs was performed. After transient expression using the Expi293 Expression System, TaKE-Fcs were purified from the culture supernatant using protein A chromatography and separated from the products using SDS-PAGE. Bands corresponding to the estimated molecular weights of TaKE1-Fc and TaKE2-Fc (~130 kDa) were observed, whereas these bands were not observed for TaKE3-Fc (Fig. 2A). The yields were 1.7 and 0.23 mg/l for TaKE1-Fc and TaKE2-Fc, respectively. Both TaKE1-Fc and TaKE2-Fc inhibited cancer growth in a dose-dependent manner, although TaKE1-Fc exhibited stronger effects at lower concentrations (Fig. 2B). These results demonstrated that the trispecific antibodies were successfully prepared. TaKE1-Fc exhibited high yield and activity and was selected for further evaluation.
Preparation of TaKE1 with no Fc region
For further functional evaluation using the highly purified samples, TaKE1 with no Fc region was prepared because it can bind and activate NK cells. TaKE1 was prepared from TaKE1-Fc using HRV3C protease digestion (as described in the Materials and methods section; Fig. 3A). After removing the protease and undigested TaKE1-Fc, gel filtration was performed to fractionate the TaKE1 monomer. Three peaks were estimated to correspond to the TaKE1 dimer, TaKE1 monomer and impurities, respectively, from the calibration protein information (Fig. 3B). SDS-PAGE for each fraction supported these results and revealed that TaKE1 monomer was prepared with high purity and with the theoretical molecular weight in the peak 2 fraction (Fig. 3C). Thus, the peak 2 fraction was used for functional evaluation.
Functional evaluations of TaKE1
To investigate the trispecific binding abilities of TaKE1, flow cytometric analyses using EGFR-positive TFK-1 cells, CD3-positive T-LAK cells and CD16-positive NK92/CD16A cells were performed. Although the shifts in the fluorescence intensity differed for each target, with relatively low values observed for TFK-1 cells and T-LAK cells and high values observed for NK92/CD16A cells, the trispecificity of TaKE1 was confirmed (Fig. 4). Subsequently, the growth inhibitory effects of TaKE1 versus those of bsAbs were evaluated in an MTS assay using T-LAK cells or NK92/CD16A cells as effector cells (Fig. 5A and B). The bsAbs Ex16-scDb-HL and Ex3-scDb-LH inhibited cancer growth only when the corresponding effector cells, which were NK92/CD16A cells for Ex16-scDb-HL and T-LAK cells for Ex3-scDb-LH, were cocultured. By contrast, TaKE1 revealed comparable effects with Ex16-scDb-HL in NK92/CD16A cells and with Ex3-scDb-LH in T-LAK cells. Subsequently, the effects when both effector cells were present at different ratios were evaluated (Fig. 5C-E). Ex16-scDb-HL was ineffective at concentrations below 100 pM. By contrast, TaKE1 was effective at most concentrations and demonstrated slightly stronger effects than those of Ex3-scDb-LH, particularly at a lower ratio of T-LAK cells. Finally, the effects of TaKE1 were compared with mixtures of Ex16-scDb-HL and Ex3-scDb-LH, under different ratios of effector cells, to investigate the potency of TaKE1 to the combination of two bsAbs (Fig. 6). Under most conditions, TaKE1 exhibited at least comparative effects as a mixture of bsAbs and strong effects in the small population of T-LAK cells. These results indicated the successful preparation of a trispecific antibody that recruits T cells and NK cells, with comparable effects as the combination of two bsAbs.
Discussion
To induce therapeutic effects independent of the populations of T cells and NK cells among TILs, three trispecific antibodies were designed, namely TaKEs. All TaKEs contained two Fvs against cancer and one Fv for each effector cell for effective tumor targeting and reducing overactivation of effector cells (27), as well as a human Fc region to simplify protein A purification. TaKE1-Fc and TaKE2-Fc, which were predicted to form circular tetrabody-like configurations, were expressed transiently in Expi293 cells (Fig. 2A), whereas TaKE3-Fc with four scFvs connected tandemly was not expressed. In scFvs, the length and composition of the polypeptide linker between the VH and VL domains strongly influences formation of the multimeric structure; such scFv dimers, trimers and tetramers are known as diabodies, triabodies and tetrabodies, respectively (32–36). Multimerization depends on the antibody clones. It has been previously reported that anti-EGFR scFv and Ex3 diabodies both include anti-EGFR Fv clone 528 and partially form stable tetrabody (37) and tetrabody-like structures (38), respectively. This characteristic may have contributed to the successful preparation of TaKE1-Fc and TaKE2-Fc, as well as the higher expression yields and activities of TaKE1-Fc with two 528 Fvs than those of TaKE2-Fc.
For further functional evaluation, the Fc region of TaKE1-Fc was removed through HRV3C protease digestion because the Fc region can bind and activate NK cells. Although complete digestion of Fc was confirmed using SDS-PAGE (Fig. 3A), the peak corresponding to the TaKE1 dimer revealed a similar intensity as the monomer peak (Fig. 3B and C). Formation of multimers by domain swapping often occurs during the development of multispecific and/or multivalent antibodies with multiple Fv domains, as it has been previously reported (22,39). The length of the linkers and domain order of Fvs, which can markedly affect the function (22,40), are currently being optimized by the authors, to reduce the formation of such multimers and increase the number of monomers for further functional evaluation.
Although TaKE1 showed trispecificity with the ability to bind TFK-1 cells, T-LAK cells, and NK92/CD16A cells (Fig. 4), strong interactions were clearly observed only in NK92/CD16A cells. Anti-Ex3 serum was used as the detection antibody because TaKE1 possesses no potential detection tags; the epitopes in TaKE1 for anti-Ex3 serum may be hidden by binding of TaKE1 to EGFR on TFK-1 cells and CD3 on T-LAK cells. TaKE1 was effective in the presence of either NK92/CD16A cells or T-LAK cells, unlike bsAbs (Fig. 5A and B), supporting the trispecificity of TaKE1. In the presence of both effector cells, TaKE1 was more effective than Ex16-scDb-HL at most concentrations and than Ex3-scDb-LH only at a lower ratio of T-LAK cells (Fig. 5 C-E). Although further detailed evaluation is needed, these results indicate that TaKE1 binds predominantly to T-LAK cells. TaKE1 also demonstrated comparable or higher cancer growth inhibitory effects than the combination of the two types of bsAbs (Fig. 6). Although other in vitro studies such as cell cycle analysis and apoptosis analysis, and in vivo studies to evaluate antitumor effects should be performed, a functional trispecific antibody that may recruit both T and NK cells was developed.
Various multispecific and/or multivalent antibody formats have been designed using Fvs, as well as single-domain antibodies, such as VHH (17,41,42). However, these formats may not be functional and practical because their effects are highly dependent on the therapeutic strategy, targets and antibody clones. Especially, in the series of the comprehensive development of bsAbs, an improvement of ~1,000-times was identified in the cytotoxicity by screening effective combinations of antibody clones even for the same targets (43). Antibody combinations and structural formats may produce steric hindrance in the cross-linking of target cells (22,44), and these may also affect the efficacy of trispecific antibodies. In actuality, the TaKE format with a circular tetrabody-like configuration also has antibody clone dependencies; TaKE1 was superior to TaKE2 and further investigation of antibody clones may result in the enhancement of cytotoxicity. However, the highly potent cytotoxicity would raise concerning side effects. In this case, a design of prodrug antibodies is effective (45), and the universal design of prodrug antibodies was recently reported by the authors (46). One advantage of the TaKE format without the Fc region is the possibility of producing these antibodies using a cost-effective microbial expression system. The authors of the present study have previously prepared anti-EGFR tetrabody (37) and Ex3 tetrabody (38), both of which are similar in size to TaKE, using Escherichia coli and reported the preparation of functional bsAbs using the gram-positive Brevibacillus choshinensis expression system (13). The authors are working to prepare TaKEs using microbial expression systems.
While the development of complex multispecific antibodies has been progressing, one limitation is methods to evaluate and compare the efficacy of them precisely. General methods for in vitro growth inhibition assay can not always reflect the behavior of cancer therapeutic multispecific antibodies in solid tumors with TILs. The use of a xenografted mouse model with a surgical resection containing TILs from cancer patients is a possibility (47); however, this involves extensive challenges especially in the regulations. The generation of spheroids formed from cancer cell lines containing some effector cells is an ideal alternative method (48). A cancer spheroid model with T cells and NK cells would be helpful to evaluate and compare trispecific antibodies such as TaKEs in the future.
In the development of multispecific antibodies, the designs to redirect some types of immune cells, especially T cells and NK cells, toward cancer cells have been largely studied (10,11). However, one limitation is the differences in the abundance ratios of T cells and NK cells in tumor cells (19) and administration of two bsAbs recruiting T cells and NK cells is not a realistic therapeutic strategy due to the high production costs. Although the preparation of homogeneous molecules with high yields is required for additional in vitro investigations and in vivo experiments to strengthen the utility of the TaKE, a functional trispecific antibody with potentially strong therapeutic effects that are independent of the T cell and NK cell populations was generated.
Supplementary Material
Supporting Data
Acknowledgements
The authors would like to thank Ms Hiromi Ogata (Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University, Sendai, Japan), Ms Mika Ohta, Ms Sayuri Murasaki and Ms Maiko Ueki (all from Department of Biotechnology and Life Science, Graduate School of Engineering, Tokyo University of Agriculture and Technology, Tokyo, Japan) for their excellent technical assistance.
Funding
The present research was funded by Grants-in-Aid for Scientific Research from the Japan Society for the Promotion of Science (JSPS) (grant nos. 21K18321 and 22H02915).
Availability of data and materials
All data generated or analyzed during this study are included in this published article.
Authors' contributions
RA and IK conceived the study. RA, TN and IK designed the study. KK, AK and SS conducted the experiments. RA and KK analyzed the data and confirm the authenticity of all the raw data. KK and RA wrote the manuscript. TN and IK provided conceptual advice for the study. RA and KK edited the manuscript. All authors read and approved the final version of the manuscript.
Ethics approval and consent to participate
The present study was approved (approval no. R2-60) by the Biosafety Subcommittee for Safe Handling of Living Modified Organisms at Tokyo University of Agriculture and Technology (Tokyo, Japan) and carried out according to the guidelines of the committee.
Patient consent for publication
Not applicable.
Competing interests
The authors declare that they have no competing interests.
Glossary
Abbreviations
Abbreviations:
NK |
natural killer |
TaKE |
T cell and NK cell engager |
bsAbs |
bispecific antibodies |
EGFR |
epidermal growth factor receptor |
TILs |
tumor-infiltrating lymphocytes |
Fv |
variable fragment |
scFv |
single-chain Fv |
SDS-PAGE |
sodium dodecyl sulfate-polyacrylamide gel electrophoresis |
T-LAK |
lymphokine-activated killer cells with T-cell phenotype |
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